Clone GH10422 Report

Search the DGRC for GH10422

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:22
Vector:pOT2
Associated Gene/Transcriptviaf-RA
Protein status:GH10422.pep: gold
Preliminary Size:1300
Sequenced Size:1171

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18593 2001-01-01 Release 2 assignment
CG18593 2002-06-12 Blastp of sequenced clone
CG18593 2003-01-01 Sim4 clustering to Release 3
viaf 2008-04-29 Release 5.5 accounting
viaf 2008-08-15 Release 5.9 accounting
viaf 2008-12-18 5.12 accounting

Clone Sequence Records

GH10422.complete Sequence

1171 bp (1171 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122105

> GH10422.complete
TCACTTCGTGTAGAATAATTCAGTTTTATTTTTAGTTTATAAAAGCGCTG
CACGCGATCAAGAATTTTATATTTTTAAGTAATTTATTTCATCGAACTAT
AATCAAAAAACATGCAGGACCCAAACGAAGATACCGAGTGGAATGATGTG
CTCCGAGCCAAGGGAATAATTGGGCCCAAGGCGAAGGAGGCGGAGATCAC
AGAGGATCAGATCCAGAAGCTGATGGACGATGCCATCCAGCGGCGCACAG
ATCTGCCACTGAATGAAGGCCAGCGCGACAAGAAGATCGACGACATGTCG
CTGGACGAACTCGACGAACTGGAGGATTCCGAGGACGAGGCTGTTCTAGA
GCAGTATCGCCAGCGACGCATCGCCGAGATGAGGGCCACCGCTGAAAAGG
CGCGATTTGGATCAGTGCGCGAGATCTCAGGACAGGATTATGTCAACGAG
GTAACCAAGGCCGGCGAGGGCATCTGGGTGGTACTCCACCTGTATGCCAA
CGGCGTACCGCTGTGCGCACTGATCCACCATCACATGCAGCAGCTGGCCG
TCCGCTTTCCACAGACCAAGTTCGTGCGCTCCGTTGCCACCACCTGCATA
CCAAACTTCCCCGAGAAGAACCTGCCCACCATCTTTATCTACCACGAGGG
TGCGCTGCGCAAGCAGTACATAGGCCCACTGGAGCTGCGCGGCGACAAGT
TGACCGCTGAGGAGCTGGAGTTTATGCTGGGTCAGGCGGGAGCAGTGCCC
ACCGAGATCACGGAGGATCCACGGCCGCAGATCAGGGACAAGATGCTTGC
CGATCTCGAAGACAAAAGCTCGGACTTCTACTGAGTCATAGCCAAAGCAT
AGCCCTCATCCAACTTTAAGTTCAGTGGGGTGGGTAAATATTTTTAGGAT
GAATCATCAAGTAAAGCCCAATCCAAAACCGGCAAGCGGATCTTTTTTTG
CGGATTCACTTAACTAACAAATCAAACATTTAAACGCAGTTTGAAACGTA
AACATCCGCCGTTGAGAGCGAACGTTATTGATTTATATATTAACCAGTCC
TCAGGAATTTCCCTTGCACGTTTTCATTTCATTGTTTTTTGGCATTTATG
TACCCTCATAAATAAATTGTTTACTTTTCTACAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

GH10422.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
viaf-RA 1166 viaf-RA 33..1166 1..1134 5670 100 Plus
CG6931-RA 1162 CG6931-RA 1011..1162 1137..986 760 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11982665..11983683 1134..116 5080 99.9 Minus
chr3L 24539361 chr3L 11983850..11983967 118..1 590 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11991850..11992871 1137..116 5110 100 Minus
3L 28110227 3L 11993038..11993155 118..1 590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11984950..11985971 1137..116 5110 100 Minus
3L 28103327 3L 11986138..11986255 118..1 590 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:13:04 has no hits.

GH10422.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:01 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11982665..11983681 118..1134 99 <- Minus
chr3L 11983851..11983967 1..117 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:50 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 1..723 112..834 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:32 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 1..723 112..834 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:46 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 1..723 112..834 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:13 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 1..723 112..834 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:41 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 1..723 112..834 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:50:39 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 25..1158 1..1134 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:31 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 25..1158 1..1134 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:46 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 25..1158 1..1134 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:13 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 25..1158 1..1134 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:41 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
viaf-RA 25..1158 1..1134 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:01 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11991853..11992869 118..1134 100 <- Minus
3L 11993039..11993155 1..117 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:01 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11991853..11992869 118..1134 100 <- Minus
3L 11993039..11993155 1..117 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:01 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11991853..11992869 118..1134 100 <- Minus
3L 11993039..11993155 1..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:46 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11984953..11985969 118..1134 100 <- Minus
arm_3L 11986139..11986255 1..117 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:08 Download gff for GH10422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11984953..11985969 118..1134 100 <- Minus
3L 11986139..11986255 1..117 100   Minus

GH10422.pep Sequence

Translation from 111 to 833

> GH10422.pep
MQDPNEDTEWNDVLRAKGIIGPKAKEAEITEDQIQKLMDDAIQRRTDLPL
NEGQRDKKIDDMSLDELDELEDSEDEAVLEQYRQRRIAEMRATAEKARFG
SVREISGQDYVNEVTKAGEGIWVVLHLYANGVPLCALIHHHMQQLAVRFP
QTKFVRSVATTCIPNFPEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAE
ELEFMLGQAGAVPTEITEDPRPQIRDKMLADLEDKSSDFY*

GH10422.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24491-PA 240 GF24491-PA 1..240 1..240 1210 93.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13862-PA 240 GG13862-PA 1..240 1..240 1268 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14439-PA 240 GH14439-PA 1..240 1..240 1169 89.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
viaf-PA 240 CG18593-PA 1..240 1..240 1243 100 Plus
CG7650-PA 276 CG7650-PA 117..269 65..212 152 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13572-PA 240 GI13572-PA 1..240 1..240 1172 90 Plus
Dmoj\GI13629-PA 282 GI13629-PA 123..275 65..212 143 26.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25063-PA 240 GL25063-PA 1..240 1..240 1176 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15005-PA 240 GA15005-PA 1..240 1..240 1173 89.6 Plus
Dpse\GA20503-PA 276 GA20503-PA 121..269 68..212 160 24.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24686-PA 240 GM24686-PA 1..240 1..240 1270 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12756-PA 240 GD12756-PA 1..240 1..240 1270 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13906-PA 240 GJ13906-PA 1..240 1..240 1184 90.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17253-PA 241 GK17253-PA 1..241 1..240 1171 89.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20155-PA 240 GE20155-PA 1..240 1..240 1268 98.8 Plus

GH10422.hyp Sequence

Translation from 111 to 833

> GH10422.hyp
MQDPNEDTEWNDVLRAKGIIGPKAKEAEITEDQIQKLMDDAIQRRTDLPL
NEGQRDKKIDDMSLDELDELEDSEDEAVLEQYRQRRIAEMRATAEKARFG
SVREISGQDYVNEVTKAGEGIWVVLHLYANGVPLCALIHHHMQQLAVRFP
QTKFVRSVATTCIPNFPEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAE
ELEFMLGQAGAVPTEITEDPRPQIRDKMLADLEDKSSDFY*

GH10422.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
viaf-PA 240 CG18593-PA 1..240 1..240 1243 100 Plus
CG7650-PA 276 CG7650-PA 117..269 65..212 152 26.8 Plus