BDGP Sequence Production Resources |
Search the DGRC for GH10427
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 104 |
Well: | 27 |
Vector: | pOT2 |
Associated Gene/Transcript | sel-RA |
Protein status: | GH10427.pep: gold |
Preliminary Size: | 1076 |
Sequenced Size: | 996 |
Gene | Date | Evidence |
---|---|---|
CG12918 | 2001-01-01 | Release 2 assignment |
CG12918 | 2002-03-20 | Blastp of sequenced clone |
CG12918 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12918 | 2008-04-29 | Release 5.5 accounting |
CG12918 | 2008-08-15 | Release 5.9 accounting |
CG12918 | 2008-12-18 | 5.12 accounting |
996 bp (996 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094698
> GH10427.complete CACAATTCTTGTGAACGCTGACCCAGACCCACTGACCGCGTCCCTCGTCA CCACATCTTGGGCATAAATTAAGTAGAATTCTTCACTTATCGCTGCAGAG CATCAAGAACCACGTCGCTCTTAAGTCGTCGTAAATACAGCACACGTCTT TATCAACGCCGCACTTTTAAACGGAAGGCGCTTCTGCTGACGTGGTTAAT GCAATTAGTTTCCACGCGTTAAACTATTAAACAATCAATTAAAAAGATGC TGACGAAGGCGCTTATCCTGTTCGGCCTGCTGGCCTTGGCCCAAGGTTAC AGCTTCACCTCCCGCGAGGTCAAGTGTCACGTGTGCAAGGCCGTGGTTAC GGAACTGGAGGAGGCCATTGCCAAGGAGGACCCCCACAAGATGGCCGATG TCAGTGGATTCCGGCTGGACGCACAGGGAAATTCGATCAGCAAGAAAGTT CGCCTAGTGAAATCTGAAATGTTCCTTACCGAACTGATGGAGAAGATCTG CGAAAAAATGGACGACTACTTGAAGGCAACCTACAAGAGCAACGGGAAAT TCACACTCCTCAAGATGATCATCAATGGTCAGATGAACCCAGACTCCTCG TTGGTTGACTTTGTGCAAGATGGTGATCTCAACAAAAGCCTGGGGCACTT CTGCAACGAAGTACTGGAGGACAACGATGAGATCTTCGTTAAAGCCTTCC AGGCCGAAGAGCTCGGAAACGATTTAGACATCAAGATCTGCTCAGAACAA GCGAGCTACTGCGACGAATCGCCGGTCCAGGAGGAGTATGACTTTGATGG CAAAGAGGAACTGTAGTTTGTCCCAGTGAAAGCTTAGTTAATTAACGAAT TTCCTTGATCGCCGCCAGTGGAGGTCTTTGTACTGATATTTCGAACGAAA ATTATGTTTAGCTAATGTAAAGAAAACCATGCCAAGTGTTACAAATTATG TACGACAATAAATTCCATGTGCAATGTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5938400..5938877 | 977..500 | 2375 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 5939340..5939670 | 331..1 | 1655 | 100 | Minus |
chr2R | 21145070 | chr2R | 5939071..5939240 | 500..331 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10050861..10051339 | 978..500 | 2395 | 100 | Minus |
2R | 25286936 | 2R | 10051802..10052132 | 331..1 | 1655 | 100 | Minus |
2R | 25286936 | 2R | 10051533..10051702 | 500..331 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10052060..10052538 | 978..500 | 2395 | 100 | Minus |
2R | 25260384 | 2R | 10053001..10053331 | 331..1 | 1655 | 100 | Minus |
2R | 25260384 | 2R | 10052732..10052901 | 500..331 | 850 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5938400..5938877 | 500..977 | 99 | <- | Minus |
chr2R | 5939072..5939239 | 332..499 | 100 | <- | Minus |
chr2R | 5939340..5939670 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12918-RA | 1..570 | 247..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12918-RA | 1..570 | 247..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sel-RA | 1..570 | 247..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12918-RA | 1..570 | 247..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sel-RA | 1..570 | 247..816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12918-RA | 1..977 | 1..977 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12918-RA | 46..1022 | 1..977 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sel-RA | 36..1012 | 1..977 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12918-RA | 1..977 | 1..977 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sel-RA | 36..1012 | 1..977 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10050862..10051339 | 500..977 | 100 | <- | Minus |
2R | 10051534..10051701 | 332..499 | 100 | <- | Minus |
2R | 10051802..10052132 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10050862..10051339 | 500..977 | 100 | <- | Minus |
2R | 10051534..10051701 | 332..499 | 100 | <- | Minus |
2R | 10051802..10052132 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10050862..10051339 | 500..977 | 100 | <- | Minus |
2R | 10051534..10051701 | 332..499 | 100 | <- | Minus |
2R | 10051802..10052132 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5938367..5938844 | 500..977 | 100 | <- | Minus |
arm_2R | 5939039..5939206 | 332..499 | 100 | <- | Minus |
arm_2R | 5939307..5939637 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10052061..10052538 | 500..977 | 100 | <- | Minus |
2R | 10052733..10052900 | 332..499 | 100 | <- | Minus |
2R | 10053001..10053331 | 1..331 | 100 | Minus |
Translation from 246 to 815
> GH10427.hyp MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMA DVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNG KFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKA FQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sel-PA | 189 | CG12918-PA | 1..189 | 1..189 | 971 | 100 | Plus |
Translation from 246 to 815
> GH10427.pep MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMA DVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNG KFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKA FQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12915-PA | 189 | GF12915-PA | 1..189 | 1..189 | 866 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25238-PA | 189 | GG25238-PA | 1..189 | 1..189 | 967 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20247-PA | 190 | GH20247-PA | 10..190 | 11..189 | 800 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sel-PA | 189 | CG12918-PA | 1..189 | 1..189 | 971 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19417-PA | 227 | GI19417-PA | 55..227 | 17..189 | 800 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10560-PA | 189 | GL10560-PA | 1..189 | 1..189 | 863 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11907-PA | 189 | GA11907-PA | 1..189 | 1..189 | 863 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20558-PA | 189 | GM20558-PA | 1..189 | 1..189 | 985 | 99.5 | Plus |
Dsec\GM18732-PA | 253 | GM18732-PA | 67..253 | 3..189 | 947 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD26011-PA | 189 | GD26011-PA | 1..189 | 1..189 | 990 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22481-PA | 190 | GJ22481-PA | 10..190 | 11..189 | 811 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21362-PA | 189 | GK21362-PA | 1..189 | 1..189 | 857 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21841-PA | 189 | GE21841-PA | 1..189 | 1..189 | 984 | 98.9 | Plus |