Clone GH10478 Report

Search the DGRC for GH10478

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:78
Vector:pOT2
Associated Gene/TranscriptCG15309-RA
Protein status:GH10478.pep: gold
Preliminary Size:1654
Sequenced Size:1612

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15309 2001-01-01 Release 2 assignment
CG15309 2001-09-19 Blastp of sequenced clone
CG15309 2003-01-01 Sim4 clustering to Release 3
CG15309 2008-04-29 Release 5.5 accounting
CG15309 2008-08-15 Release 5.9 accounting
CG15309 2008-12-18 5.12 accounting

Clone Sequence Records

GH10478.complete Sequence

1612 bp (1612 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060270

> GH10478.complete
AAACAATGCAGATTGCTGCATTATTATACAAGTGAAGAAGAAGAGAGTGC
CATTTTCGGCTGCTATTTGTGCACGTCTCTGTGACTGTGTGTGAGTGTGT
GCGTGTCGCGTGTGTGCTCTGCGCTGAGGTGTTTGTTGGCGAACGACAGC
GAAAGGCGACAAGCAAACAAACAAACAAACAAAACACACAGGACTATTCT
TTGGCTGGAATTCAGATATAGCCGGGGATCGGAATCGGGATTGGAATCAG
AATTGGAAACGGAATTAAAATCATATATATTCGGATCAAAAATCGCGCGA
GGCAAGTGACTTTAAACGCAGAAATCATTGTTCAATGACAGCAGTCGCGG
CAGTTTTTACCGCTGTTGCTACTGCATCTGCTGCTGGTCACGCCCCTTCC
GAATCCGCCCCCAAAGACGACCCCATTGCCTCGGATAAAGCCAAAGTGCA
CAGTTAACAAAGCCCCAAAGCAACCGAAACTGAAAGATTTAGTTGTGGTC
CTGGTCACAAGAAAGAGGACCACTTTTAGGACAGACAATCGCAGGAGATT
TGCAGTCTATAACGTTCGCATATAGAGGCCCAAAAGAGTCAAGGATATCA
TCAACGTCACGATGGTGAAGACGTTTCAGGCCTATCTACCGTCCACGAAT
CGGACATACTCATGTGTTCACTGCCGCGCCCACCTCGCCTCCCACGACGA
GCTCATATCGAAGTCGTTTCAGGGCAGTCAGGGACCGGCCTATCTGTTCA
ACTCGGTGGTGAACGTGGCCTGTGGCCAGACGGAGGAGCGTGTGCTCCTG
ACCGGCCTCCATGCGGTGGCGGACATCTACTGCGAGTGCTGCAAGACGCC
GCTGGGCTGGAAATATGAGCACGCCTATGAGTCCAGCCAAAAGTACAAGG
AGGGCAAGTTCATCATTGAGCTGGCGCACATGATCAAGGAGAACGGCTGG
GACTGAAGGGCTGTCCGTTTGGATGGGCTGATTAATCAGAAGCACACCCG
TAACAGGAACAGCAGCAACAGCGGCGGCGGCGGCGGCAGCGGCAGGAAAA
GCAGCGAGTTCACCACACAAAAAACGAAACACACACGCGGCAAATAAATT
GCAGACAAAGAGTGTTTACAAAATGGCTAAAGTCTGGAAAATGCGAACAG
AGAACACACAGAGAATAAAGAAGAGGACAATGAAAATGCGAGATCGAGTT
TTAGGGTATCACACAATATATATATGCTATTATATAGTGCATAACTCGTC
GTATCTTATAGAGCAAAACAAACAAATCAATTAAACACACAGATATACCG
CACATTCGATCGAAAAACACACATTACATAAAAAGCTTGATTGGGTTTTT
GGGAAGGATCTCTGCGCTGGCCGCCATCTAGGATTTCCGCACTTTCATTT
CGATTACCATTACCCACTAATACCACTTTGTTTTCCTTTTACCATTTTGC
GTTGCAAGTTTATTCAATTGTGTGTACTTTCTGTGCAAAATTAATTCGAT
GCCTTAATTCGATGATATCAAATATAAAACTGGCGAAAGCCACACGCAAA
ACAGAACTTGCACTGCCAATCAATAAGAAAAATGTTAAGCATCCAAAAAA
AAAAAAAAAAAA

GH10478.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309.b 2967 CG15309.b 64..1675 1..1612 8045 99.9 Plus
CG15309.a 2132 CG15309.a 64..1675 1..1612 8045 99.9 Plus
CG15309-RA 1779 CG15309-RA 64..1675 1..1612 8045 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10098205..10099286 1594..510 5330 99.6 Minus
chrX 22417052 chrX 10099587..10099903 511..195 1570 99.7 Minus
chrX 22417052 chrX 10103765..10103958 194..1 940 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10206575..10207677 1612..510 5500 99.9 Minus
X 23542271 X 10207978..10208294 511..195 1585 100 Minus
X 23542271 X 10212153..10212346 194..1 970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10214673..10215775 1612..510 5500 99.9 Minus
X 23527363 X 10216076..10216392 511..195 1585 100 Minus
X 23527363 X 10220251..10220444 194..1 970 100 Minus
Blast to na_te.dros performed 2019-03-16 08:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6916 985..1093 187 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2446 990..1098 175 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6701..6820 975..1093 164 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6828 985..1081 160 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6852 985..1081 159 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2395 994..1081 158 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2860 988..1062 152 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1089..1179 985..1071 148 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6848 985..1055 140 69.3 Plus
roo 9092 roo DM_ROO 9092bp 1043..1109 404..338 137 67.2 Minus
roo 9092 roo DM_ROO 9092bp 1095..1141 385..339 136 76.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6825..6920 985..1075 134 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2549 984..1103 132 61.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7948..8006 994..1055 132 71 Plus
TART-C 11124 TART-C TARTC 11124bp 9392..9450 994..1055 132 71 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 627..684 1266..1323 127 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6907 990..1104 126 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1523..1613 994..1081 124 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2392..2474 990..1073 120 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2848 985..1065 119 62.2 Plus
TART-A 13424 TART-A 13424bp 115..178 390..327 113 64.1 Minus
TART-A 13424 TART-A 13424bp 11293..11356 390..327 113 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6808 1008..1093 112 62.9 Plus

GH10478.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:31:12 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10098205..10099284 512..1594 97 <- Minus
chrX 10099587..10099903 195..511 99 == Minus
chrX 10103801..10103958 1..158 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:57 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RB 1..345 612..956 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:44 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RB 1..345 612..956 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:47:43 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 1..345 612..956 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:33 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RB 1..345 612..956 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:42:35 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 1..345 612..956 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:21 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:43 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:47:43 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RA 29..1622 1..1594 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:33 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:42:35 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RA 29..1622 1..1594 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:12 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
X 10206593..10207675 512..1594 100 <- Minus
X 10207978..10208294 195..511 100 <- Minus
X 10212153..10212346 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:12 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
X 10206593..10207675 512..1594 100 <- Minus
X 10207978..10208294 195..511 100 <- Minus
X 10212153..10212346 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:12 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
X 10206593..10207675 512..1594 100 <- Minus
X 10207978..10208294 195..511 100 <- Minus
X 10212153..10212346 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:47:43 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10100626..10101708 512..1594 100 <- Minus
arm_X 10102011..10102327 195..511 100 <- Minus
arm_X 10106186..10106379 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:02 Download gff for GH10478.complete
Subject Subject Range Query Range Percent Splice Strand
X 10220251..10220444 1..194 100   Minus
X 10214691..10215773 512..1594 100 <- Minus
X 10216076..10216392 195..511 100 <- Minus

GH10478.hyp Sequence

Translation from 611 to 955

> GH10478.hyp
MVKTFQAYLPSTNRTYSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVV
NVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKYKEGKF
IIELAHMIKENGWD*

GH10478.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-PE 114 CG15309-PE 1..114 1..114 623 100 Plus
CG15309-PD 114 CG15309-PD 1..114 1..114 623 100 Plus
CG15309-PC 114 CG15309-PC 1..114 1..114 623 100 Plus
CG15309-PB 114 CG15309-PB 1..114 1..114 623 100 Plus
CG15309-PA 114 CG15309-PA 1..114 1..114 623 100 Plus

GH10478.pep Sequence

Translation from 611 to 955

> GH10478.pep
MVKTFQAYLPSTNRTYSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVV
NVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKYKEGKF
IIELAHMIKENGWD*

GH10478.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19108-PA 114 GF19108-PA 1..114 1..114 617 100 Plus
Dana\GF19499-PA 121 GF19499-PA 13..112 14..113 248 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18944-PA 114 GG18944-PA 1..114 1..114 617 100 Plus
Dere\GG19506-PA 121 GG19506-PA 13..112 14..113 249 45 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24074-PA 114 GH24074-PA 1..114 1..114 617 100 Plus
Dgri\GH24471-PA 121 GH24471-PA 16..112 17..113 240 46.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-PE 114 CG15309-PE 1..114 1..114 623 100 Plus
CG15309-PD 114 CG15309-PD 1..114 1..114 623 100 Plus
CG15309-PC 114 CG15309-PC 1..114 1..114 623 100 Plus
CG15309-PB 114 CG15309-PB 1..114 1..114 623 100 Plus
CG15309-PA 114 CG15309-PA 1..114 1..114 623 100 Plus
Yippee-PA 121 CG1989-PA 13..112 14..113 244 45 Plus
Yippee-PB 110 CG1989-PB 13..94 14..95 204 45.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15523-PA 114 GI15523-PA 1..114 1..114 617 100 Plus
Dmoj\GI15336-PA 121 GI15336-PA 13..112 14..113 242 44 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22456-PA 114 GL22456-PA 1..114 1..114 608 98.2 Plus
Dper\GL26724-PA 121 GL26724-PA 13..112 14..113 245 45 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27919-PA 114 GA27919-PA 1..114 1..114 617 100 Plus
Dpse\GA15174-PA 121 GA15174-PA 13..112 14..113 245 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11334-PA 114 GM11334-PA 1..114 1..114 617 100 Plus
Dsec\GM11494-PA 121 GM11494-PA 13..112 14..113 249 45 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24655-PA 114 GD24655-PA 1..114 1..114 617 100 Plus
Dsim\GD15888-PA 121 GD15888-PA 13..112 14..113 249 45 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19280-PA 114 GJ19280-PA 1..114 1..114 617 100 Plus
Dvir\GJ14773-PA 121 GJ14773-PA 13..112 14..113 242 44 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20038-PA 114 GK20038-PA 1..114 1..114 614 99.1 Plus
Dwil\GK25643-PA 121 GK25643-PA 1..112 1..113 246 40.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15414-PA 114 GE15414-PA 1..114 1..114 617 100 Plus
Dyak\GE16160-PA 121 GE16160-PA 13..112 14..113 248 45 Plus