Clone GH10480 Report

Search the DGRC for GH10480

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:80
Vector:pOT2
Associated Gene/Transcriptskap-RC
Protein status:GH10480.pep: gold
Preliminary Size:2200
Sequenced Size:1756

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11963 2001-01-01 Release 2 assignment
CG11963 2001-09-19 Blastp of sequenced clone
CG11963 2003-01-01 Sim4 clustering to Release 3
CG11963 2008-04-29 Release 5.5 accounting
CG11963 2008-08-15 Release 5.9 accounting
CG11964 2008-08-15 Release 5.9 accounting
CG11963 2008-12-18 5.12 accounting
CG11964 2008-12-18 5.12 accounting

Clone Sequence Records

GH10480.complete Sequence

1756 bp (1756 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058331

> GH10480.complete
TTAAACGTACGTTCTCATTCGATTTCAGAACAAAATGGCTTCATTCTTGG
CACGAACTGGCGGCCCCCTGATCGAAACCGTTAGGCCAGCGGCCATAAAA
AAGATTCTTGGCCTGGCTCCCATCGCCGTCCAGCAGCTGAGGAACCTCAA
TGTCCAGGAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAA
CACCTCGTTTCGCTGTTGCCAAGAACGGCAAGGAGGCCAACGATATCGCC
ACCAAGCTGAAGACCGATAACCTGGTGCTGAAGGCTCAGGTTTTGGCCGG
AGGACGAGGCAAAGGAACCTTTAAGAATGGCCTGAAGGGAGGTGTGCGAG
TGGTCTACGATCCCCAGACCGCTGAAGAACTTTCAAGCAAAATGATCGAT
CAGCTTCTGGTCACCAAGCAAACCGGAGCAGCCGGTCGCATCTGCAAAAA
GGTGATGGTTGCCGAAAGGAAGTTCCCCCGCCGTGAGTTCTACTTCGCCG
TGATGATGGAGCGTGCCTTTAACGGTCCCGTGCTGATCGCCTCCAAGGAG
GGTGGTGTTGATATTGAGGAGGTGGCTGCCAGCAGTCCAGATGCCATTTT
GTACGAACCCATCGATATAGGCACTGGCTTGACCAGTGAACAGGCCGAAA
AGATCGTCAAGAAGGTTGGTCTGGGCGGCGATGGCGAGGACACACATGTC
CAGATGCTGTTGAATCTGTATGACCTGTTCGTCAAGAAGGATGCCCTCTT
GGTTGAGATCAACCCCTATGCCGAGGATGCCATGTCCGGCTGCTTCTTCG
CATTGGATGCTAAGCTGCGATTTGATGACAACGCCGAGTTTCGTCAGAAG
GAGCTGTTTGCGCTGCGCGATTGGACCCAGGAGGATCCCAAGGAAGTCGA
GGCTGCCAAATACAATCTGAACTACATTGCCCTGGATGGCACTATCGGCT
GCATGGTGAACGGCGCCGGTCTGGCCATGGCCACCATGGATATCATTAAG
TTGTATGGCGGTGAACCGGCCAATTTCCTGGATGTCGGTGGTGGTGCCAC
TGCCGAGGCGGTCAAGGCCGCCTTCAAGATCATCACTTCCGATCCGAAGG
TGCTTTGCATTCTGGTCAACATCTTCGGTGGTATTATGCGTTGTGATGTC
ATTGCCGAGGGTATCATCTCCGCCACCAAGGATCTGAATCTGAACATGCC
CGTGGTTGTGCGTCTTCAGGGAACCAAAGTCAAGGAGGCCCGCGAACTGA
TTCGTACATCTGGACTGAAGATTCTGGCCCGCGATGATCTAGATAAGGCT
GCCGATCTCGCCGTGCACTTGGCGCAAATCGTCAAACTGGCCCGCGAAAT
GAAGATGGACGTGAACTTCGAGATTCCCGATGCCCAAAAGGGCAAGGGCG
ATTGCAAGAAAGATCAAAAACAGCCCGACAGTAAAGGTGGCAAGAAGTCG
GAGAAGAAAGATGACAAGAAATCTGATTGCACAAAAAAAGAGGAAAAGAA
AAAGGAAGAAAAGAAAGACATTTGCGAAAAGAAAGGTAAAAAGTAAAGGG
ATACAAATTTTGTAATAAACAATGCAGGATCGAGCCGGATGTGTTTGAGA
CTTACACCATCAAAAAGAAGGAAGCCATTGTTTAAATTCAAAATCCAAAT
TTGCCACAAAAGTTTCATTGTTCAAAATTTTAATCTCAAATTTCAGATGT
AAACTTCTGACCCGCCACATTTTTAAAGATTTTCATAATAAAAAAAAAAA
AAAAAA

GH10480.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
skap-RC 1783 skap-RC 45..1783 1..1739 8695 100 Plus
skap-RB 1780 skap-RB 45..1780 1..1739 8625 99.8 Plus
skap-RD 1780 skap-RD 70..1780 29..1739 8555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4767337..4767762 795..1220 2115 99.8 Plus
chr3R 27901430 chr3R 4768611..4768960 1390..1739 1735 99.7 Plus
chr3R 27901430 chr3R 4766851..4767119 524..792 1345 100 Plus
chr3R 27901430 chr3R 4767827..4768000 1217..1390 855 99.4 Plus
chr3R 27901430 chr3R 4766628..4766791 361..524 820 100 Plus
chr3R 27901430 chr3R 4766410..4766563 207..360 755 99.4 Plus
chr3R 27901430 chr3R 4765595..4765700 102..207 530 100 Plus
chr3R 27901430 chr3R 4764714..4764816 1..103 500 99 Plus
chr3L 24539361 chr3L 5554778..5554929 1044..893 355 82.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8941408..8941833 795..1220 2130 100 Plus
3R 32079331 3R 8942678..8943028 1390..1740 1755 100 Plus
3R 32079331 3R 8940922..8941190 524..792 1345 100 Plus
3R 32079331 3R 8941898..8942071 1217..1390 870 100 Plus
3R 32079331 3R 8940699..8940862 361..524 820 100 Plus
3R 32079331 3R 8940481..8940634 207..360 770 100 Plus
3R 32079331 3R 8939667..8939772 102..207 530 100 Plus
3R 32079331 3R 8938786..8938888 1..103 515 100 Plus
3L 28110227 3L 5562188..5562339 1044..893 355 82.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8682239..8682664 795..1220 2130 100 Plus
3R 31820162 3R 8683509..8683859 1390..1740 1755 100 Plus
3R 31820162 3R 8681753..8682021 524..792 1345 100 Plus
3R 31820162 3R 8682729..8682902 1217..1390 870 100 Plus
3R 31820162 3R 8681530..8681693 361..524 820 100 Plus
3R 31820162 3R 8681312..8681465 207..360 770 100 Plus
3R 31820162 3R 8680498..8680603 102..207 530 100 Plus
3R 31820162 3R 8679617..8679719 1..103 515 100 Plus
3L 28103327 3L 5555288..5555439 1044..893 355 82.2 Minus
Blast to na_te.dros performed 2019-03-15 12:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 5666..5722 1521..1578 125 70.7 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4904..4953 217..168 114 74.5 Minus

GH10480.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:02:31 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4768611..4768704 1390..1483 100 == Plus
chr3R 4768770..4768960 1549..1739 99   Plus
chr3R 4764714..4764816 1..103 99 -> Plus
chr3R 4765597..4765700 104..207 100 -> Plus
chr3R 4766411..4766563 208..360 99 -> Plus
chr3R 4766628..4766790 361..523 100 -> Plus
chr3R 4766851..4767122 524..794 98 -> Plus
chr3R 4767337..4767761 795..1219 99 -> Plus
chr3R 4767830..4767999 1220..1389 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:58 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG11963-RB 1..1509 35..1546 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:33 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
skap-RD 1..1512 35..1546 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:36:23 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
skap-RC 1..1512 35..1546 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:19 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG11963-RB 1..1509 35..1546 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:49:41 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
skap-RC 1..1512 35..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:03 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG11963-RB 40..1775 1..1739 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:33 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
skap-RC 45..1783 1..1739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:36:23 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
skap-RC 29..1767 1..1739 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:20 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG11963-RB 40..1775 1..1739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:41 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
skap-RC 29..1767 1..1739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:31 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8940482..8940634 208..360 100 -> Plus
3R 8938786..8938888 1..103 100 -> Plus
3R 8939669..8939772 104..207 100 -> Plus
3R 8940699..8940861 361..523 100 -> Plus
3R 8940922..8941193 524..794 98 -> Plus
3R 8941408..8941832 795..1219 100 -> Plus
3R 8941901..8942070 1220..1389 100 -> Plus
3R 8942678..8943027 1390..1739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:31 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8940482..8940634 208..360 100 -> Plus
3R 8938786..8938888 1..103 100 -> Plus
3R 8939669..8939772 104..207 100 -> Plus
3R 8940699..8940861 361..523 100 -> Plus
3R 8940922..8941193 524..794 98 -> Plus
3R 8941408..8941832 795..1219 100 -> Plus
3R 8941901..8942070 1220..1389 100 -> Plus
3R 8942678..8943027 1390..1739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:31 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8940482..8940634 208..360 100 -> Plus
3R 8938786..8938888 1..103 100 -> Plus
3R 8939669..8939772 104..207 100 -> Plus
3R 8940699..8940861 361..523 100 -> Plus
3R 8940922..8941193 524..794 98 -> Plus
3R 8941408..8941832 795..1219 100 -> Plus
3R 8941901..8942070 1220..1389 100 -> Plus
3R 8942678..8943027 1390..1739 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:36:23 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4768400..4768749 1390..1739 100   Plus
arm_3R 4764508..4764610 1..103 100 -> Plus
arm_3R 4765391..4765494 104..207 100 -> Plus
arm_3R 4766204..4766356 208..360 100 -> Plus
arm_3R 4766421..4766583 361..523 100 -> Plus
arm_3R 4766644..4766915 524..794 98 -> Plus
arm_3R 4767130..4767554 795..1219 100 -> Plus
arm_3R 4767623..4767792 1220..1389 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:49 Download gff for GH10480.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8679617..8679719 1..103 100 -> Plus
3R 8680500..8680603 104..207 100 -> Plus
3R 8681313..8681465 208..360 100 -> Plus
3R 8681530..8681692 361..523 100 -> Plus
3R 8681753..8682024 524..794 98 -> Plus
3R 8682239..8682663 795..1219 100 -> Plus
3R 8682732..8682901 1220..1389 100 -> Plus
3R 8683509..8683858 1390..1739 100   Plus

GH10480.pep Sequence

Translation from 34 to 1545

> GH10480.pep
MASFLARTGGPLIETVRPAAIKKILGLAPIAVQQLRNLNVQEHVSYSLLN
EAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGTFKNGL
KGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRR
EFYFAVMMERAFNGPVLIASKEGGVDIEEVAASSPDAILYEPIDIGTGLT
SEQAEKIVKKVGLGGDGEDTHVQMLLNLYDLFVKKDALLVEINPYAEDAM
SGCFFALDAKLRFDDNAEFRQKELFALRDWTQEDPKEVEAAKYNLNYIAL
DGTIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAEAVKAAFKII
TSDPKVLCILVNIFGGIMRCDVIAEGIISATKDLNLNMPVVVRLQGTKVK
EARELIRTSGLKILARDDLDKAADLAVHLAQIVKLAREMKMDVNFEIPDA
QKGKGDCKKDQKQPDSKGGKKSEKKDDKKSDCTKKEEKKKEEKKDICEKK
GKK*

GH10480.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17693-PA 513 GF17693-PA 1..450 1..451 2238 93.6 Plus
Dana\GF10458-PA 416 GF10458-PA 9..412 19..427 955 49.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13653-PA 505 GG13653-PA 1..496 1..500 2531 97.8 Plus
Dere\GG14126-PA 416 GG14126-PA 20..412 35..427 971 50.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23962-PA 451 GH23962-PA 1..451 1..452 2091 87.4 Plus
Dgri\GH16246-PA 420 GH16246-PA 23..409 33..419 935 50.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
ScsbetaA-PD 503 CG11963-PD 1..503 1..503 2544 100 Plus
ScsbetaA-PC 503 CG11963-PC 1..503 1..503 2544 100 Plus
ScsbetaA-PB 502 CG11963-PB 1..502 1..503 2523 99.8 Plus
ScsbetaA-PA 502 CG11963-PA 1..502 1..503 2523 99.8 Plus
ScsbetaA-PJ 452 CG11963-PJ 1..452 1..452 2267 100 Plus
ScsbetaA-PI 452 CG11963-PI 1..452 1..452 2267 100 Plus
ScsbetaA-PH 451 CG11963-PH 1..451 1..452 2246 99.8 Plus
ScsbetaA-PG 451 CG11963-PG 1..451 1..452 2246 99.8 Plus
ScsbetaG-PC 416 CG10622-PC 20..412 35..427 955 50.9 Plus
ScsbetaG-PA 416 CG10622-PA 20..412 35..427 955 50.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10056-PA 451 GI10056-PA 1..451 1..452 2091 86.9 Plus
Dmoj\GI13181-PA 420 GI13181-PA 9..417 19..427 989 50.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21555-PA 474 GL21555-PA 1..464 1..487 2090 84 Plus
Dper\GL12039-PA 422 GL12039-PA 33..418 42..427 938 50.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26331-PA 451 GA26331-PA 1..451 1..452 2149 90 Plus
Dpse\GA10444-PA 422 GA10444-PA 33..418 42..427 944 50.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23771-PA 502 GM23771-PA 1..502 1..503 2565 98.2 Plus
Dsec\GM13912-PA 416 GM13912-PA 20..412 35..427 962 50.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18581-PA 507 GD18581-PA 1..507 1..503 2410 95.1 Plus
Dsim\GD13190-PA 416 GD13190-PA 20..412 35..427 961 50.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23792-PA 451 GJ23792-PA 1..451 1..452 2107 87.8 Plus
Dvir\GJ11957-PA 415 GJ11957-PA 18..412 33..427 967 51.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11971-PA 524 GK11971-PA 1..470 1..481 2161 86.5 Plus
Dwil\GK17298-PA 416 GK17298-PA 15..412 30..427 981 51.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25915-PA 503 GE25915-PA 1..496 1..500 2541 98.2 Plus
Dyak\GE20552-PA 416 GE20552-PA 20..412 35..427 961 50.6 Plus

GH10480.hyp Sequence

Translation from 719 to 1545

> GH10480.hyp
MTCSSRRMPSWLRSTPMPRMPCPAVIFALDAKLRFDDNAEFRQKELFALR
DWTQEDPKEVEAAKYNLNYIALDGTIGCMVNGAGLAMATMDIIKLYGGEP
ANFLDVGGGATAEAVKAAFKIITSDPKVLCILVNIFGGIMRCDVIAEGII
SATKDLNLNMPVVVRLQGTKVKEARELIRTSGLKILARDDLDKAADLAVH
LAQIVKLAREMKMDVNFEIPDAQKGKGDCKKDQKQPDSKGGKKSEKKDDK
KSDCTKKEEKKKEEKKDICEKKGKK*

GH10480.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
skap-PB 502 CG11963-PB 254..502 27..275 1272 100 Plus
skap-PA 502 CG11963-PA 254..502 27..275 1272 100 Plus
skap-PD 503 CG11963-PD 255..503 27..275 1272 100 Plus
skap-PC 503 CG11963-PC 255..503 27..275 1272 100 Plus
skap-PH 451 CG11963-PH 254..451 27..224 995 100 Plus