BDGP Sequence Production Resources |
Search the DGRC for GH10480
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 104 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | skap-RC |
Protein status: | GH10480.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1756 |
Gene | Date | Evidence |
---|---|---|
CG11963 | 2001-01-01 | Release 2 assignment |
CG11963 | 2001-09-19 | Blastp of sequenced clone |
CG11963 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11963 | 2008-04-29 | Release 5.5 accounting |
CG11963 | 2008-08-15 | Release 5.9 accounting |
CG11964 | 2008-08-15 | Release 5.9 accounting |
CG11963 | 2008-12-18 | 5.12 accounting |
CG11964 | 2008-12-18 | 5.12 accounting |
1756 bp (1756 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058331
> GH10480.complete TTAAACGTACGTTCTCATTCGATTTCAGAACAAAATGGCTTCATTCTTGG CACGAACTGGCGGCCCCCTGATCGAAACCGTTAGGCCAGCGGCCATAAAA AAGATTCTTGGCCTGGCTCCCATCGCCGTCCAGCAGCTGAGGAACCTCAA TGTCCAGGAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAA CACCTCGTTTCGCTGTTGCCAAGAACGGCAAGGAGGCCAACGATATCGCC ACCAAGCTGAAGACCGATAACCTGGTGCTGAAGGCTCAGGTTTTGGCCGG AGGACGAGGCAAAGGAACCTTTAAGAATGGCCTGAAGGGAGGTGTGCGAG TGGTCTACGATCCCCAGACCGCTGAAGAACTTTCAAGCAAAATGATCGAT CAGCTTCTGGTCACCAAGCAAACCGGAGCAGCCGGTCGCATCTGCAAAAA GGTGATGGTTGCCGAAAGGAAGTTCCCCCGCCGTGAGTTCTACTTCGCCG TGATGATGGAGCGTGCCTTTAACGGTCCCGTGCTGATCGCCTCCAAGGAG GGTGGTGTTGATATTGAGGAGGTGGCTGCCAGCAGTCCAGATGCCATTTT GTACGAACCCATCGATATAGGCACTGGCTTGACCAGTGAACAGGCCGAAA AGATCGTCAAGAAGGTTGGTCTGGGCGGCGATGGCGAGGACACACATGTC CAGATGCTGTTGAATCTGTATGACCTGTTCGTCAAGAAGGATGCCCTCTT GGTTGAGATCAACCCCTATGCCGAGGATGCCATGTCCGGCTGCTTCTTCG CATTGGATGCTAAGCTGCGATTTGATGACAACGCCGAGTTTCGTCAGAAG GAGCTGTTTGCGCTGCGCGATTGGACCCAGGAGGATCCCAAGGAAGTCGA GGCTGCCAAATACAATCTGAACTACATTGCCCTGGATGGCACTATCGGCT GCATGGTGAACGGCGCCGGTCTGGCCATGGCCACCATGGATATCATTAAG TTGTATGGCGGTGAACCGGCCAATTTCCTGGATGTCGGTGGTGGTGCCAC TGCCGAGGCGGTCAAGGCCGCCTTCAAGATCATCACTTCCGATCCGAAGG TGCTTTGCATTCTGGTCAACATCTTCGGTGGTATTATGCGTTGTGATGTC ATTGCCGAGGGTATCATCTCCGCCACCAAGGATCTGAATCTGAACATGCC CGTGGTTGTGCGTCTTCAGGGAACCAAAGTCAAGGAGGCCCGCGAACTGA TTCGTACATCTGGACTGAAGATTCTGGCCCGCGATGATCTAGATAAGGCT GCCGATCTCGCCGTGCACTTGGCGCAAATCGTCAAACTGGCCCGCGAAAT GAAGATGGACGTGAACTTCGAGATTCCCGATGCCCAAAAGGGCAAGGGCG ATTGCAAGAAAGATCAAAAACAGCCCGACAGTAAAGGTGGCAAGAAGTCG GAGAAGAAAGATGACAAGAAATCTGATTGCACAAAAAAAGAGGAAAAGAA AAAGGAAGAAAAGAAAGACATTTGCGAAAAGAAAGGTAAAAAGTAAAGGG ATACAAATTTTGTAATAAACAATGCAGGATCGAGCCGGATGTGTTTGAGA CTTACACCATCAAAAAGAAGGAAGCCATTGTTTAAATTCAAAATCCAAAT TTGCCACAAAAGTTTCATTGTTCAAAATTTTAATCTCAAATTTCAGATGT AAACTTCTGACCCGCCACATTTTTAAAGATTTTCATAATAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4767337..4767762 | 795..1220 | 2115 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 4768611..4768960 | 1390..1739 | 1735 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 4766851..4767119 | 524..792 | 1345 | 100 | Plus |
chr3R | 27901430 | chr3R | 4767827..4768000 | 1217..1390 | 855 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 4766628..4766791 | 361..524 | 820 | 100 | Plus |
chr3R | 27901430 | chr3R | 4766410..4766563 | 207..360 | 755 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 4765595..4765700 | 102..207 | 530 | 100 | Plus |
chr3R | 27901430 | chr3R | 4764714..4764816 | 1..103 | 500 | 99 | Plus |
chr3L | 24539361 | chr3L | 5554778..5554929 | 1044..893 | 355 | 82.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8941408..8941833 | 795..1220 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 8942678..8943028 | 1390..1740 | 1755 | 100 | Plus |
3R | 32079331 | 3R | 8940922..8941190 | 524..792 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 8941898..8942071 | 1217..1390 | 870 | 100 | Plus |
3R | 32079331 | 3R | 8940699..8940862 | 361..524 | 820 | 100 | Plus |
3R | 32079331 | 3R | 8940481..8940634 | 207..360 | 770 | 100 | Plus |
3R | 32079331 | 3R | 8939667..8939772 | 102..207 | 530 | 100 | Plus |
3R | 32079331 | 3R | 8938786..8938888 | 1..103 | 515 | 100 | Plus |
3L | 28110227 | 3L | 5562188..5562339 | 1044..893 | 355 | 82.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8682239..8682664 | 795..1220 | 2130 | 100 | Plus |
3R | 31820162 | 3R | 8683509..8683859 | 1390..1740 | 1755 | 100 | Plus |
3R | 31820162 | 3R | 8681753..8682021 | 524..792 | 1345 | 100 | Plus |
3R | 31820162 | 3R | 8682729..8682902 | 1217..1390 | 870 | 100 | Plus |
3R | 31820162 | 3R | 8681530..8681693 | 361..524 | 820 | 100 | Plus |
3R | 31820162 | 3R | 8681312..8681465 | 207..360 | 770 | 100 | Plus |
3R | 31820162 | 3R | 8680498..8680603 | 102..207 | 530 | 100 | Plus |
3R | 31820162 | 3R | 8679617..8679719 | 1..103 | 515 | 100 | Plus |
3L | 28103327 | 3L | 5555288..5555439 | 1044..893 | 355 | 82.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 5666..5722 | 1521..1578 | 125 | 70.7 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4904..4953 | 217..168 | 114 | 74.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4768611..4768704 | 1390..1483 | 100 | == | Plus |
chr3R | 4768770..4768960 | 1549..1739 | 99 | Plus | |
chr3R | 4764714..4764816 | 1..103 | 99 | -> | Plus |
chr3R | 4765597..4765700 | 104..207 | 100 | -> | Plus |
chr3R | 4766411..4766563 | 208..360 | 99 | -> | Plus |
chr3R | 4766628..4766790 | 361..523 | 100 | -> | Plus |
chr3R | 4766851..4767122 | 524..794 | 98 | -> | Plus |
chr3R | 4767337..4767761 | 795..1219 | 99 | -> | Plus |
chr3R | 4767830..4767999 | 1220..1389 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11963-RB | 1..1509 | 35..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skap-RD | 1..1512 | 35..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skap-RC | 1..1512 | 35..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11963-RB | 1..1509 | 35..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skap-RC | 1..1512 | 35..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11963-RB | 40..1775 | 1..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skap-RC | 45..1783 | 1..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skap-RC | 29..1767 | 1..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11963-RB | 40..1775 | 1..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skap-RC | 29..1767 | 1..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8940482..8940634 | 208..360 | 100 | -> | Plus |
3R | 8938786..8938888 | 1..103 | 100 | -> | Plus |
3R | 8939669..8939772 | 104..207 | 100 | -> | Plus |
3R | 8940699..8940861 | 361..523 | 100 | -> | Plus |
3R | 8940922..8941193 | 524..794 | 98 | -> | Plus |
3R | 8941408..8941832 | 795..1219 | 100 | -> | Plus |
3R | 8941901..8942070 | 1220..1389 | 100 | -> | Plus |
3R | 8942678..8943027 | 1390..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8940482..8940634 | 208..360 | 100 | -> | Plus |
3R | 8938786..8938888 | 1..103 | 100 | -> | Plus |
3R | 8939669..8939772 | 104..207 | 100 | -> | Plus |
3R | 8940699..8940861 | 361..523 | 100 | -> | Plus |
3R | 8940922..8941193 | 524..794 | 98 | -> | Plus |
3R | 8941408..8941832 | 795..1219 | 100 | -> | Plus |
3R | 8941901..8942070 | 1220..1389 | 100 | -> | Plus |
3R | 8942678..8943027 | 1390..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8940482..8940634 | 208..360 | 100 | -> | Plus |
3R | 8938786..8938888 | 1..103 | 100 | -> | Plus |
3R | 8939669..8939772 | 104..207 | 100 | -> | Plus |
3R | 8940699..8940861 | 361..523 | 100 | -> | Plus |
3R | 8940922..8941193 | 524..794 | 98 | -> | Plus |
3R | 8941408..8941832 | 795..1219 | 100 | -> | Plus |
3R | 8941901..8942070 | 1220..1389 | 100 | -> | Plus |
3R | 8942678..8943027 | 1390..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4768400..4768749 | 1390..1739 | 100 | Plus | |
arm_3R | 4764508..4764610 | 1..103 | 100 | -> | Plus |
arm_3R | 4765391..4765494 | 104..207 | 100 | -> | Plus |
arm_3R | 4766204..4766356 | 208..360 | 100 | -> | Plus |
arm_3R | 4766421..4766583 | 361..523 | 100 | -> | Plus |
arm_3R | 4766644..4766915 | 524..794 | 98 | -> | Plus |
arm_3R | 4767130..4767554 | 795..1219 | 100 | -> | Plus |
arm_3R | 4767623..4767792 | 1220..1389 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8679617..8679719 | 1..103 | 100 | -> | Plus |
3R | 8680500..8680603 | 104..207 | 100 | -> | Plus |
3R | 8681313..8681465 | 208..360 | 100 | -> | Plus |
3R | 8681530..8681692 | 361..523 | 100 | -> | Plus |
3R | 8681753..8682024 | 524..794 | 98 | -> | Plus |
3R | 8682239..8682663 | 795..1219 | 100 | -> | Plus |
3R | 8682732..8682901 | 1220..1389 | 100 | -> | Plus |
3R | 8683509..8683858 | 1390..1739 | 100 | Plus |
Translation from 34 to 1545
> GH10480.pep MASFLARTGGPLIETVRPAAIKKILGLAPIAVQQLRNLNVQEHVSYSLLN EAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGTFKNGL KGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRR EFYFAVMMERAFNGPVLIASKEGGVDIEEVAASSPDAILYEPIDIGTGLT SEQAEKIVKKVGLGGDGEDTHVQMLLNLYDLFVKKDALLVEINPYAEDAM SGCFFALDAKLRFDDNAEFRQKELFALRDWTQEDPKEVEAAKYNLNYIAL DGTIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAEAVKAAFKII TSDPKVLCILVNIFGGIMRCDVIAEGIISATKDLNLNMPVVVRLQGTKVK EARELIRTSGLKILARDDLDKAADLAVHLAQIVKLAREMKMDVNFEIPDA QKGKGDCKKDQKQPDSKGGKKSEKKDDKKSDCTKKEEKKKEEKKDICEKK GKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17693-PA | 513 | GF17693-PA | 1..450 | 1..451 | 2238 | 93.6 | Plus |
Dana\GF10458-PA | 416 | GF10458-PA | 9..412 | 19..427 | 955 | 49.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13653-PA | 505 | GG13653-PA | 1..496 | 1..500 | 2531 | 97.8 | Plus |
Dere\GG14126-PA | 416 | GG14126-PA | 20..412 | 35..427 | 971 | 50.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23962-PA | 451 | GH23962-PA | 1..451 | 1..452 | 2091 | 87.4 | Plus |
Dgri\GH16246-PA | 420 | GH16246-PA | 23..409 | 33..419 | 935 | 50.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ScsbetaA-PD | 503 | CG11963-PD | 1..503 | 1..503 | 2544 | 100 | Plus |
ScsbetaA-PC | 503 | CG11963-PC | 1..503 | 1..503 | 2544 | 100 | Plus |
ScsbetaA-PB | 502 | CG11963-PB | 1..502 | 1..503 | 2523 | 99.8 | Plus |
ScsbetaA-PA | 502 | CG11963-PA | 1..502 | 1..503 | 2523 | 99.8 | Plus |
ScsbetaA-PJ | 452 | CG11963-PJ | 1..452 | 1..452 | 2267 | 100 | Plus |
ScsbetaA-PI | 452 | CG11963-PI | 1..452 | 1..452 | 2267 | 100 | Plus |
ScsbetaA-PH | 451 | CG11963-PH | 1..451 | 1..452 | 2246 | 99.8 | Plus |
ScsbetaA-PG | 451 | CG11963-PG | 1..451 | 1..452 | 2246 | 99.8 | Plus |
ScsbetaG-PC | 416 | CG10622-PC | 20..412 | 35..427 | 955 | 50.9 | Plus |
ScsbetaG-PA | 416 | CG10622-PA | 20..412 | 35..427 | 955 | 50.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10056-PA | 451 | GI10056-PA | 1..451 | 1..452 | 2091 | 86.9 | Plus |
Dmoj\GI13181-PA | 420 | GI13181-PA | 9..417 | 19..427 | 989 | 50.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21555-PA | 474 | GL21555-PA | 1..464 | 1..487 | 2090 | 84 | Plus |
Dper\GL12039-PA | 422 | GL12039-PA | 33..418 | 42..427 | 938 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26331-PA | 451 | GA26331-PA | 1..451 | 1..452 | 2149 | 90 | Plus |
Dpse\GA10444-PA | 422 | GA10444-PA | 33..418 | 42..427 | 944 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23771-PA | 502 | GM23771-PA | 1..502 | 1..503 | 2565 | 98.2 | Plus |
Dsec\GM13912-PA | 416 | GM13912-PA | 20..412 | 35..427 | 962 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18581-PA | 507 | GD18581-PA | 1..507 | 1..503 | 2410 | 95.1 | Plus |
Dsim\GD13190-PA | 416 | GD13190-PA | 20..412 | 35..427 | 961 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23792-PA | 451 | GJ23792-PA | 1..451 | 1..452 | 2107 | 87.8 | Plus |
Dvir\GJ11957-PA | 415 | GJ11957-PA | 18..412 | 33..427 | 967 | 51.3 | Plus |
Translation from 719 to 1545
> GH10480.hyp MTCSSRRMPSWLRSTPMPRMPCPAVIFALDAKLRFDDNAEFRQKELFALR DWTQEDPKEVEAAKYNLNYIALDGTIGCMVNGAGLAMATMDIIKLYGGEP ANFLDVGGGATAEAVKAAFKIITSDPKVLCILVNIFGGIMRCDVIAEGII SATKDLNLNMPVVVRLQGTKVKEARELIRTSGLKILARDDLDKAADLAVH LAQIVKLAREMKMDVNFEIPDAQKGKGDCKKDQKQPDSKGGKKSEKKDDK KSDCTKKEEKKKEEKKDICEKKGKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
skap-PB | 502 | CG11963-PB | 254..502 | 27..275 | 1272 | 100 | Plus |
skap-PA | 502 | CG11963-PA | 254..502 | 27..275 | 1272 | 100 | Plus |
skap-PD | 503 | CG11963-PD | 255..503 | 27..275 | 1272 | 100 | Plus |
skap-PC | 503 | CG11963-PC | 255..503 | 27..275 | 1272 | 100 | Plus |
skap-PH | 451 | CG11963-PH | 254..451 | 27..224 | 995 | 100 | Plus |