Clone GH10486 Report

Search the DGRC for GH10486

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:86
Vector:pOT2
Associated Gene/TranscriptCG11191-RA
Protein status:GH10486.pep: gold
Preliminary Size:1353
Sequenced Size:1303

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11191 2001-01-01 Release 2 assignment
CG11191 2002-05-15 Blastp of sequenced clone
CG11191 2003-01-01 Sim4 clustering to Release 3
CG11191 2008-04-29 Release 5.5 accounting
CG11191 2008-08-15 Release 5.9 accounting
CG11191 2008-12-18 5.12 accounting

Clone Sequence Records

GH10486.complete Sequence

1303 bp (1303 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118767

> GH10486.complete
CCAACGGGTTGCAGCGGCGATGAGGCAAATGCCCCGGCTAACGGACGCAA
CTCCGATGGAAGGGCAACAATAGCCACTGTAATTGCAGCGTTCAATTAGG
GAGGTACAAAGCGACAGCGACACAAAGACATCGTCAGCATGTCGCACTTG
CTGAGGCGCACCAAGAAGTCCTGTCTGAAGTTCCTGCGCAAGATATCGAC
TTCAAAGCAGCTCTTTGTCCAGCGGCTGGACGAGGAGGACGGGGACGACG
AGGAGGTGGAGGAGGAGCTCAACCTGCAGCGAGATCTGGAGCTGGATGTG
AACAGCAACTGTCCGGTGACGGAGGCCATCTACGAAGAGCTGCAGCTGAG
CGAGTGCAACCAGGCCTTGGACTTGGCCACCTCCAAGGAGGTGGAGGTGG
AGGAACTGCAGCCAGCGGCCAAGCATGACCTGCGCACCAAATACATGATG
AGCTGCGGCAACTACGAGGTGTTGGACACACCACTAACGACCATCGAGTT
CGAGCGGGTGAAATACAAGGCGAATGTACGCTACCTGCGGCACACGCCCT
CCAATTCCAGTCTGGATCTGCAGCTGGAGGAACAGAAGGAGGAGCAGCCA
GAGCAGCAGCAGCAGCAGCAGGCTACTCCGCGGAAACAGCAAGTGCTGCA
GCAGGCAACTCCTAGGAAACAACAAGTGCAGCAAAGGATTCCCACGCCCA
GCCGCTACCATCCCTGCAGTATCAGCCTGGGCTCCAAGCTGGAGGGCAAC
TACCACAGCGTGGTGATCATGGAGCCACCGCACGACGACTTCCCCATTGT
TAAGTGGGACATCAACGGGAACTCCCTGGACGACGACGCCTGCGATCGCT
GGGATGACTTCGAAGCCAGGTGGCGGCAGGCGGCGGCGGCCACCAGATCC
CTCTCCCAGTCGCAAAAGTCCAGCCACCAGTCCAGCTCCTGCACCCTGGA
GACCTGGGTGGACGACACGGAGCCCCTCAGCCTGGAGCTGCACCGACACG
ACAATGCAGTAGGCGGAAACAACTGCAATCTTTGCCTTAGGAGCTTCTGA
GACCGGAAACGGACACTCGGCGGCTTTGTAACCTCCACTTTGCGTCCAGC
GATAGAGCACGAAAACCAGTCTTGTGAGAATTACCTACATACGAGTATAT
TATACATATATGTAATCGAGTATTTGAGTCGGTAGACCGCAATTTTCATT
ATAGAAAGTTGTTTTCGAGAATATCCATTAACAATAAAGTGTGTATGTGT
GTGCGGCGCCATACCTTTGGCTCCATACCTTGAAAAAAAAAAAAAAAAAA
AAA

GH10486.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11191-RA 1551 CG11191-RA 111..1393 1..1283 6415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3888070..3889171 1282..179 5455 99.8 Minus
chr2R 21145070 chr2R 3889342..3889521 180..1 900 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8000648..8001752 1283..179 5525 100 Minus
2R 25286936 2R 8001923..8002102 180..1 900 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8001847..8002951 1283..179 5525 100 Minus
2R 25260384 2R 8003122..8003301 180..1 900 100 Minus
Blast to na_te.dros performed 2019-03-16 07:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10654..10735 580..660 154 69.9 Plus

GH10486.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:20:31 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3888070..3889169 181..1282 94 <- Minus
chr2R 3889342..3889521 1..180 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:01 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 1..912 139..1050 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:46 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 1..912 139..1050 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:29 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 1..912 139..1050 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:22 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 1..912 139..1050 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:31:34 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 1..912 139..1050 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:43 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 19..1300 1..1282 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:46 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 19..1300 1..1282 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:29 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 19..1300 1..1282 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:23 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 19..1300 1..1282 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:31:34 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
CG11191-RA 19..1300 1..1282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:31 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8000649..8001750 181..1282 100 <- Minus
2R 8001923..8002102 1..180 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:31 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8000649..8001750 181..1282 100 <- Minus
2R 8001923..8002102 1..180 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:31 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8000649..8001750 181..1282 100 <- Minus
2R 8001923..8002102 1..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:29 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3888154..3889255 181..1282 100 <- Minus
arm_2R 3889428..3889607 1..180 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:44 Download gff for GH10486.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8001848..8002949 181..1282 100 <- Minus
2R 8003122..8003301 1..180 100   Minus

GH10486.pep Sequence

Translation from 138 to 1049

> GH10486.pep
MSHLLRRTKKSCLKFLRKISTSKQLFVQRLDEEDGDDEEVEEELNLQRDL
ELDVNSNCPVTEAIYEELQLSECNQALDLATSKEVEVEELQPAAKHDLRT
KYMMSCGNYEVLDTPLTTIEFERVKYKANVRYLRHTPSNSSLDLQLEEQK
EEQPEQQQQQQATPRKQQVLQQATPRKQQVQQRIPTPSRYHPCSISLGSK
LEGNYHSVVIMEPPHDDFPIVKWDINGNSLDDDACDRWDDFEARWRQAAA
ATRSLSQSQKSSHQSSSCTLETWVDDTEPLSLELHRHDNAVGGNNCNLCL
RSF*

GH10486.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11220-PA 286 GF11220-PA 1..286 1..303 872 68.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10685-PA 301 GG10685-PA 1..301 1..303 1244 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19995-PA 266 GH19995-PA 104..239 119..278 251 40.4 Plus
Dgri\GH19995-PA 266 GH19995-PA 1..30 1..30 146 96.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11191-PB 303 CG11191-PB 1..303 1..303 1594 100 Plus
CG11191-PA 303 CG11191-PA 1..303 1..303 1594 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19173-PA 285 GI19173-PA 109..244 119..278 282 41.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10602-PA 321 GL10602-PA 1..321 1..303 712 54.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10828-PA 323 GA10828-PA 1..323 1..303 714 55 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20732-PA 104 GM20732-PA 8..104 207..303 518 96.9 Plus
Dsec\GM20731-PA 71 GM20731-PA 1..50 1..50 254 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10198-PA 302 GD10198-PA 1..302 1..303 1561 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20235-PA 282 GJ20235-PA 1..247 1..278 457 43 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21559-PA 220 GK21559-PA 1..219 1..275 469 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23388-PA 305 GE23388-PA 1..305 1..303 1216 91.6 Plus

GH10486.hyp Sequence

Translation from 138 to 1049

> GH10486.hyp
MSHLLRRTKKSCLKFLRKISTSKQLFVQRLDEEDGDDEEVEEELNLQRDL
ELDVNSNCPVTEAIYEELQLSECNQALDLATSKEVEVEELQPAAKHDLRT
KYMMSCGNYEVLDTPLTTIEFERVKYKANVRYLRHTPSNSSLDLQLEEQK
EEQPEQQQQQQATPRKQQVLQQATPRKQQVQQRIPTPSRYHPCSISLGSK
LEGNYHSVVIMEPPHDDFPIVKWDINGNSLDDDACDRWDDFEARWRQAAA
ATRSLSQSQKSSHQSSSCTLETWVDDTEPLSLELHRHDNAVGGNNCNLCL
RSF*

GH10486.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11191-PB 303 CG11191-PB 1..303 1..303 1594 100 Plus
CG11191-PA 303 CG11191-PA 1..303 1..303 1594 100 Plus