Clone GH10494 Report

Search the DGRC for GH10494

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:94
Vector:pOT2
Associated Gene/Transcriptscramb2-RA
Protein status:GH10494.pep: gold
Preliminary Size:2200
Sequenced Size:1678

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1893 2001-01-01 Release 2 assignment
CG1893 2001-07-04 Blastp of sequenced clone
CG1893 2003-01-01 Sim4 clustering to Release 3
CG1893 2008-04-29 Release 5.5 accounting
scramb2 2008-08-15 Release 5.9 accounting
scramb2 2008-12-18 5.12 accounting

Clone Sequence Records

GH10494.complete Sequence

1678 bp (1678 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060271

> GH10494.complete
TTTTTTTTTTCCGCTATCATTTTTTTTTTTAATTCATCACATTACTCTTT
TTTGCAACTCTACACTTTTGTTTTCACTTATCTAAGATATTTTCTGTTAA
AGAATCCGATACGAATTTAATTGCTGGGAATAACAATGATGCAGATGAGC
GAGTACAAGGTGCTCCCGCAGAATGCACCGCAGGACGAGAATGGCGCAGT
GGTCCTGCAGCCGCAGGCGGCGAATGTTGGCAACAATGCCAACGGACCTG
AAAACTGGATGTCGATACCCGTGGGCATGCCCAACTGCCCGCAGGGACTG
GAATACCTGACCGCTCTGGACCAGTTGCTCGTGTCGCAGAAGATCGAGAA
ACTGGAGCTGCTCACCGGCTTCGAGACGAAGAACCGCTTCAAGGTGAAGA
ACTCACTGGGCCAGAATGTGTACTTCGCGTACGAGGAGAGCGACTGCTGC
ACCCGCAACATGCTCGGCCGGTCGCGCCCCTTCGAGATGAAGATACTGGA
CAATTTTCAGAACGAGGTGCTCCACCTGTACCGGCCCTTCAAGTGCGACA
TCCTCTGCTGCTTTCCCAGCTGCATGAACGCCGTGGAGGTGTCGGCGCCA
CCCGGCCAGGTGATCGGTAGCGTTGAGCAGGTCTGCACCTTCATGCGGCC
CAAGTTCAACATCAAGAACACATGCGGCGATACCGTCCTGCAGATCGAGG
GACCCGTCTGTCCCTGCAAGTGCTTCAGCGATACCAACTTCAAGGTATTG
AGCGCCAACAACGAGGAGATCGGCAAAATCAGCAAACAATGGTCCGGACT
GGGAAGGGAGCTGTTCACCGATGCGGACTACTTCAGCGTCACCTTCCCCC
TGAATCTGGATGTCCGCATGAAGGCGCTCATATTCGCAGCGCTCTTTTTG
ATTGACGCGGTTTACTACGAGCAGTAGGCTGTATGATGAATCGCATTCTA
AAGGAACAAACGCCCAAACATTATAATCGCCGACTGCTTTTTGGTTCGAC
GTGTTGCATGGTCATAGCTCTAAGAACTTTTTAACCCCTTATTTGATTAA
CGTTTCCGGGAATCTGAACAGTGCAACGCTTTGATCGATACGGAATCTCC
GCAGCAAAGGAATCTCCCGCACAACTTGGATCTGAACCGCAGTTGCACCT
TCGTTATTTTATGAACCTCGGTTTTGGCATTTAAAGCTCACCACAATGAA
GCACTTACTGACAAACGCACAAAACGGAAAACAGAAAGCAGACTACACAC
GAAGAATCCGACGAGAACGAGTGCCTTATGACGTCCTAGTTATTGTCGTC
GCCCCCGTCCCGTTTCCCCAGATTTATATACCTCGACAGACCTAGCTTTG
TTGTACGCATAGGTCGGAGCACAGGATAACTTAATTGCAACCATGGCGTA
CCTAACTAATTTACTATTACCTTTTACCTACTACATATTACATATTACAT
ATATTTTTGTATGAAACTAATTGCAATCGAATTGTTACCCATTAGAGTGG
CCTAGTGAGCCAGCTTTCAAGGCATTTTGAGATCGAAAACATCTCCTCCT
TTTTGGTACCGCTCCTGTGGCGCCGCGCAATTTTCATCACCTTCACATGT
ACTTCATGAATTTATTTATATCTCAGTTATGCTGTAAAATAAACAAACTA
TGTTTTGTACAAAAAAAAAAAAAAAAAA

GH10494.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1703 scramb2-RA 129..1698 94..1663 7850 100 Plus
CG6503-RA 409 CG6503-RA 325..409 94..10 425 100 Minus
CG6503.a 609 CG6503.a 359..443 94..10 425 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3043487..3044243 1660..904 3725 99.5 Minus
chr3L 24539361 chr3L 3045095..3045588 746..253 2410 99.2 Minus
chr3L 24539361 chr3L 3044346..3044507 904..743 810 100 Minus
chr3L 24539361 chr3L 3046012..3046168 250..94 785 100 Minus
chr3R 27901430 chr3R 22247711..22247794 10..94 375 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3044110..3044869 1663..904 3800 100 Minus
3L 28110227 3L 3045721..3046217 746..250 2485 100 Minus
3L 28110227 3L 3044972..3045133 904..743 810 100 Minus
3L 28110227 3L 3046637..3046793 250..94 785 100 Minus
3R 32079331 3R 26424697..26424781 10..94 425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3044110..3044869 1663..904 3800 100 Minus
3L 28103327 3L 3045721..3046217 746..250 2485 100 Minus
3L 28103327 3L 3044972..3045133 904..743 810 100 Minus
3L 28103327 3L 3046637..3046793 250..94 785 100 Minus
3R 31820162 3R 26165528..26165612 10..94 425 100 Plus
3L 28103327 3L 10214522..10214634 875..763 175 76.9 Minus
3L 28103327 3L 10214994..10215090 458..362 155 77.3 Minus
Blast to na_te.dros performed on 2019-03-16 07:32:02 has no hits.

GH10494.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:33:00 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3043487..3044243 904..1660 99 <- Minus
chr3L 3044347..3044505 745..903 100 <- Minus
chr3L 3045097..3045590 251..744 98 <- Minus
chr3L 3046012..3046165 92..250 96 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:03 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 1..792 136..927 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:13 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 1..792 136..927 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:47 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 1..792 136..927 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:32 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 1..792 136..927 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:19 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 1..792 136..927 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:28:03 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 18..1584 94..1660 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:13 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 18..1584 94..1660 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:47 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 20..1586 94..1660 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:32 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 18..1584 94..1660 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:19 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 20..1586 94..1660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:00 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3044113..3044869 904..1660 100 <- Minus
3L 3044973..3045131 745..903 100 <- Minus
3L 3045723..3046216 251..744 100 <- Minus
3L 3046637..3046793 94..250 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:00 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3044113..3044869 904..1660 100 <- Minus
3L 3044973..3045131 745..903 100 <- Minus
3L 3045723..3046216 251..744 100 <- Minus
3L 3046637..3046793 94..250 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:00 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3044113..3044869 904..1660 100 <- Minus
3L 3044973..3045131 745..903 100 <- Minus
3L 3045723..3046216 251..744 100 <- Minus
3L 3046637..3046793 94..250 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:47 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3044113..3044869 904..1660 100 <- Minus
arm_3L 3044973..3045131 745..903 100 <- Minus
arm_3L 3045723..3046216 251..744 100 <- Minus
arm_3L 3046637..3046793 94..250 100 == Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:27 Download gff for GH10494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3044113..3044869 904..1660 100 <- Minus
3L 3044973..3045131 745..903 100 <- Minus
3L 3045723..3046216 251..744 100 <- Minus
3L 3046637..3046793 94..250 100 == Minus

GH10494.pep Sequence

Translation from 135 to 926

> GH10494.pep
MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN
CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE
ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV
EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT
NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF
AALFLIDAVYYEQ*

GH10494.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10228-PA 260 GF10228-PA 1..260 1..263 1224 87.1 Plus
Dana\GF23835-PA 392 GF23835-PA 158..380 40..263 769 60.3 Plus
Dana\GF12436-PA 376 GF12436-PA 168..374 54..263 261 33.3 Plus
Dana\GF23837-PA 703 GF23837-PA 1..188 55..257 152 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14486-PA 263 GG14486-PA 1..263 1..263 1330 94.7 Plus
Dere\GG13979-PA 408 GG13979-PA 161..396 24..263 770 57.5 Plus
Dere\GG22697-PA 275 GG22697-PA 67..272 54..262 244 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16555-PA 378 GH16555-PA 130..366 26..263 789 58.8 Plus
Dgri\GH15491-PA 271 GH15491-PA 52..270 39..262 781 64.9 Plus
Dgri\GH22506-PA 224 GH22506-PA 70..223 113..263 304 43.5 Plus
Dgri\GH20589-PA 275 GH20589-PA 67..273 54..263 229 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-PA 263 CG1893-PA 1..263 1..263 1404 100 Plus
scramb1-PA 416 CG32056-PA 182..404 40..263 761 59.8 Plus
scramb1-PB 233 CG32056-PB 1..221 42..263 749 59.9 Plus
scramb1-PC 332 CG32056-PC 101..320 43..263 744 59.7 Plus
CG9084-PB 275 CG9084-PB 67..272 54..262 231 30.8 Plus
CG9084-PC 281 CG9084-PC 67..278 54..262 216 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13845-PA 380 GI13845-PA 146..368 40..263 768 61.2 Plus
Dmoj\GI16767-PA 230 GI16767-PA 11..209 53..256 275 31.4 Plus
Dmoj\GI19735-PA 275 GI19735-PA 67..273 54..263 229 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16303-PA 256 GL16303-PA 1..256 1..263 1181 84.4 Plus
Dper\GL11735-PA 399 GL11735-PA 165..387 40..263 781 60.7 Plus
Dper\GL11737-PA 247 GL11737-PA 34..247 49..263 655 53 Plus
Dper\GL20642-PA 273 GL20642-PA 65..270 54..262 247 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15113-PA 261 GA15113-PA 1..261 1..263 1240 87.1 Plus
Dpse\GA16644-PA 397 GA16644-PA 163..385 40..263 780 60.7 Plus
Dpse\GA23464-PA 247 GA23464-PA 34..247 49..263 644 52.6 Plus
Dpse\GA21529-PA 273 GA21529-PA 65..270 54..262 247 31.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14090-PA 263 GM14090-PA 1..263 1..263 1360 97 Plus
Dsec\GM24815-PA 416 GM24815-PA 182..404 40..263 764 59.8 Plus
Dsec\GM20472-PA 275 GM20472-PA 67..272 54..262 237 30.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13361-PA 263 GD13361-PA 1..263 1..263 1380 98.1 Plus
Dsim\GD12867-PA 416 GD12867-PA 182..404 40..263 759 58.9 Plus
Dsim\GD25941-PA 275 GD25941-PA 67..272 54..262 238 30.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11709-PA 410 GJ11709-PA 176..398 40..263 779 60.7 Plus
Dvir\GJ18435-PA 275 GJ18435-PA 67..273 54..263 232 28.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17620-PA 271 GK17620-PA 1..271 1..263 1179 81 Plus
Dwil\GK23558-PA 240 GK23558-PA 1..222 1..214 920 78.6 Plus
Dwil\GK24075-PA 399 GK24075-PA 162..387 37..263 768 60.4 Plus
Dwil\GK20657-PA 275 GK20657-PA 67..272 54..262 243 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21674-PA 263 GE21674-PA 1..263 1..263 1360 96.6 Plus
Dyak\GE20277-PA 408 GE20277-PA 174..396 40..263 767 60.3 Plus
Dyak\GE13050-PA 274 GE13050-PA 14..271 5..262 252 28.9 Plus

GH10494.hyp Sequence

Translation from 135 to 926

> GH10494.hyp
MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN
CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE
ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV
EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT
NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF
AALFLIDAVYYEQ*

GH10494.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-PA 263 CG1893-PA 1..263 1..263 1404 100 Plus
scramb1-PA 416 CG32056-PA 182..404 40..263 761 59.8 Plus
scramb1-PB 233 CG32056-PB 1..221 42..263 749 59.9 Plus
scramb1-PC 332 CG32056-PC 101..320 43..263 744 59.7 Plus
CG9084-PB 275 CG9084-PB 67..272 54..262 231 30.8 Plus