BDGP Sequence Production Resources |
Search the DGRC for GH10494
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 104 |
Well: | 94 |
Vector: | pOT2 |
Associated Gene/Transcript | scramb2-RA |
Protein status: | GH10494.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1678 |
Gene | Date | Evidence |
---|---|---|
CG1893 | 2001-01-01 | Release 2 assignment |
CG1893 | 2001-07-04 | Blastp of sequenced clone |
CG1893 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1893 | 2008-04-29 | Release 5.5 accounting |
scramb2 | 2008-08-15 | Release 5.9 accounting |
scramb2 | 2008-12-18 | 5.12 accounting |
1678 bp (1678 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060271
> GH10494.complete TTTTTTTTTTCCGCTATCATTTTTTTTTTTAATTCATCACATTACTCTTT TTTGCAACTCTACACTTTTGTTTTCACTTATCTAAGATATTTTCTGTTAA AGAATCCGATACGAATTTAATTGCTGGGAATAACAATGATGCAGATGAGC GAGTACAAGGTGCTCCCGCAGAATGCACCGCAGGACGAGAATGGCGCAGT GGTCCTGCAGCCGCAGGCGGCGAATGTTGGCAACAATGCCAACGGACCTG AAAACTGGATGTCGATACCCGTGGGCATGCCCAACTGCCCGCAGGGACTG GAATACCTGACCGCTCTGGACCAGTTGCTCGTGTCGCAGAAGATCGAGAA ACTGGAGCTGCTCACCGGCTTCGAGACGAAGAACCGCTTCAAGGTGAAGA ACTCACTGGGCCAGAATGTGTACTTCGCGTACGAGGAGAGCGACTGCTGC ACCCGCAACATGCTCGGCCGGTCGCGCCCCTTCGAGATGAAGATACTGGA CAATTTTCAGAACGAGGTGCTCCACCTGTACCGGCCCTTCAAGTGCGACA TCCTCTGCTGCTTTCCCAGCTGCATGAACGCCGTGGAGGTGTCGGCGCCA CCCGGCCAGGTGATCGGTAGCGTTGAGCAGGTCTGCACCTTCATGCGGCC CAAGTTCAACATCAAGAACACATGCGGCGATACCGTCCTGCAGATCGAGG GACCCGTCTGTCCCTGCAAGTGCTTCAGCGATACCAACTTCAAGGTATTG AGCGCCAACAACGAGGAGATCGGCAAAATCAGCAAACAATGGTCCGGACT GGGAAGGGAGCTGTTCACCGATGCGGACTACTTCAGCGTCACCTTCCCCC TGAATCTGGATGTCCGCATGAAGGCGCTCATATTCGCAGCGCTCTTTTTG ATTGACGCGGTTTACTACGAGCAGTAGGCTGTATGATGAATCGCATTCTA AAGGAACAAACGCCCAAACATTATAATCGCCGACTGCTTTTTGGTTCGAC GTGTTGCATGGTCATAGCTCTAAGAACTTTTTAACCCCTTATTTGATTAA CGTTTCCGGGAATCTGAACAGTGCAACGCTTTGATCGATACGGAATCTCC GCAGCAAAGGAATCTCCCGCACAACTTGGATCTGAACCGCAGTTGCACCT TCGTTATTTTATGAACCTCGGTTTTGGCATTTAAAGCTCACCACAATGAA GCACTTACTGACAAACGCACAAAACGGAAAACAGAAAGCAGACTACACAC GAAGAATCCGACGAGAACGAGTGCCTTATGACGTCCTAGTTATTGTCGTC GCCCCCGTCCCGTTTCCCCAGATTTATATACCTCGACAGACCTAGCTTTG TTGTACGCATAGGTCGGAGCACAGGATAACTTAATTGCAACCATGGCGTA CCTAACTAATTTACTATTACCTTTTACCTACTACATATTACATATTACAT ATATTTTTGTATGAAACTAATTGCAATCGAATTGTTACCCATTAGAGTGG CCTAGTGAGCCAGCTTTCAAGGCATTTTGAGATCGAAAACATCTCCTCCT TTTTGGTACCGCTCCTGTGGCGCCGCGCAATTTTCATCACCTTCACATGT ACTTCATGAATTTATTTATATCTCAGTTATGCTGTAAAATAAACAAACTA TGTTTTGTACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 3043487..3044243 | 1660..904 | 3725 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 3045095..3045588 | 746..253 | 2410 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 3044346..3044507 | 904..743 | 810 | 100 | Minus |
chr3L | 24539361 | chr3L | 3046012..3046168 | 250..94 | 785 | 100 | Minus |
chr3R | 27901430 | chr3R | 22247711..22247794 | 10..94 | 375 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 3044110..3044869 | 1663..904 | 3800 | 100 | Minus |
3L | 28110227 | 3L | 3045721..3046217 | 746..250 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 3044972..3045133 | 904..743 | 810 | 100 | Minus |
3L | 28110227 | 3L | 3046637..3046793 | 250..94 | 785 | 100 | Minus |
3R | 32079331 | 3R | 26424697..26424781 | 10..94 | 425 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 3044110..3044869 | 1663..904 | 3800 | 100 | Minus |
3L | 28103327 | 3L | 3045721..3046217 | 746..250 | 2485 | 100 | Minus |
3L | 28103327 | 3L | 3044972..3045133 | 904..743 | 810 | 100 | Minus |
3L | 28103327 | 3L | 3046637..3046793 | 250..94 | 785 | 100 | Minus |
3R | 31820162 | 3R | 26165528..26165612 | 10..94 | 425 | 100 | Plus |
3L | 28103327 | 3L | 10214522..10214634 | 875..763 | 175 | 76.9 | Minus |
3L | 28103327 | 3L | 10214994..10215090 | 458..362 | 155 | 77.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3043487..3044243 | 904..1660 | 99 | <- | Minus |
chr3L | 3044347..3044505 | 745..903 | 100 | <- | Minus |
chr3L | 3045097..3045590 | 251..744 | 98 | <- | Minus |
chr3L | 3046012..3046165 | 92..250 | 96 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 1..792 | 136..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 1..792 | 136..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 1..792 | 136..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 1..792 | 136..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 1..792 | 136..927 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 18..1584 | 94..1660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 18..1584 | 94..1660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 20..1586 | 94..1660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 18..1584 | 94..1660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb2-RA | 20..1586 | 94..1660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3044113..3044869 | 904..1660 | 100 | <- | Minus |
3L | 3044973..3045131 | 745..903 | 100 | <- | Minus |
3L | 3045723..3046216 | 251..744 | 100 | <- | Minus |
3L | 3046637..3046793 | 94..250 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3044113..3044869 | 904..1660 | 100 | <- | Minus |
3L | 3044973..3045131 | 745..903 | 100 | <- | Minus |
3L | 3045723..3046216 | 251..744 | 100 | <- | Minus |
3L | 3046637..3046793 | 94..250 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3044113..3044869 | 904..1660 | 100 | <- | Minus |
3L | 3044973..3045131 | 745..903 | 100 | <- | Minus |
3L | 3045723..3046216 | 251..744 | 100 | <- | Minus |
3L | 3046637..3046793 | 94..250 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3044113..3044869 | 904..1660 | 100 | <- | Minus |
arm_3L | 3044973..3045131 | 745..903 | 100 | <- | Minus |
arm_3L | 3045723..3046216 | 251..744 | 100 | <- | Minus |
arm_3L | 3046637..3046793 | 94..250 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3044113..3044869 | 904..1660 | 100 | <- | Minus |
3L | 3044973..3045131 | 745..903 | 100 | <- | Minus |
3L | 3045723..3046216 | 251..744 | 100 | <- | Minus |
3L | 3046637..3046793 | 94..250 | 100 | == | Minus |
Translation from 135 to 926
> GH10494.pep MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF AALFLIDAVYYEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10228-PA | 260 | GF10228-PA | 1..260 | 1..263 | 1224 | 87.1 | Plus |
Dana\GF23835-PA | 392 | GF23835-PA | 158..380 | 40..263 | 769 | 60.3 | Plus |
Dana\GF12436-PA | 376 | GF12436-PA | 168..374 | 54..263 | 261 | 33.3 | Plus |
Dana\GF23837-PA | 703 | GF23837-PA | 1..188 | 55..257 | 152 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14486-PA | 263 | GG14486-PA | 1..263 | 1..263 | 1330 | 94.7 | Plus |
Dere\GG13979-PA | 408 | GG13979-PA | 161..396 | 24..263 | 770 | 57.5 | Plus |
Dere\GG22697-PA | 275 | GG22697-PA | 67..272 | 54..262 | 244 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16555-PA | 378 | GH16555-PA | 130..366 | 26..263 | 789 | 58.8 | Plus |
Dgri\GH15491-PA | 271 | GH15491-PA | 52..270 | 39..262 | 781 | 64.9 | Plus |
Dgri\GH22506-PA | 224 | GH22506-PA | 70..223 | 113..263 | 304 | 43.5 | Plus |
Dgri\GH20589-PA | 275 | GH20589-PA | 67..273 | 54..263 | 229 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scramb2-PA | 263 | CG1893-PA | 1..263 | 1..263 | 1404 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 182..404 | 40..263 | 761 | 59.8 | Plus |
scramb1-PB | 233 | CG32056-PB | 1..221 | 42..263 | 749 | 59.9 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..320 | 43..263 | 744 | 59.7 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 54..262 | 231 | 30.8 | Plus |
CG9084-PC | 281 | CG9084-PC | 67..278 | 54..262 | 216 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13845-PA | 380 | GI13845-PA | 146..368 | 40..263 | 768 | 61.2 | Plus |
Dmoj\GI16767-PA | 230 | GI16767-PA | 11..209 | 53..256 | 275 | 31.4 | Plus |
Dmoj\GI19735-PA | 275 | GI19735-PA | 67..273 | 54..263 | 229 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16303-PA | 256 | GL16303-PA | 1..256 | 1..263 | 1181 | 84.4 | Plus |
Dper\GL11735-PA | 399 | GL11735-PA | 165..387 | 40..263 | 781 | 60.7 | Plus |
Dper\GL11737-PA | 247 | GL11737-PA | 34..247 | 49..263 | 655 | 53 | Plus |
Dper\GL20642-PA | 273 | GL20642-PA | 65..270 | 54..262 | 247 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15113-PA | 261 | GA15113-PA | 1..261 | 1..263 | 1240 | 87.1 | Plus |
Dpse\GA16644-PA | 397 | GA16644-PA | 163..385 | 40..263 | 780 | 60.7 | Plus |
Dpse\GA23464-PA | 247 | GA23464-PA | 34..247 | 49..263 | 644 | 52.6 | Plus |
Dpse\GA21529-PA | 273 | GA21529-PA | 65..270 | 54..262 | 247 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14090-PA | 263 | GM14090-PA | 1..263 | 1..263 | 1360 | 97 | Plus |
Dsec\GM24815-PA | 416 | GM24815-PA | 182..404 | 40..263 | 764 | 59.8 | Plus |
Dsec\GM20472-PA | 275 | GM20472-PA | 67..272 | 54..262 | 237 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13361-PA | 263 | GD13361-PA | 1..263 | 1..263 | 1380 | 98.1 | Plus |
Dsim\GD12867-PA | 416 | GD12867-PA | 182..404 | 40..263 | 759 | 58.9 | Plus |
Dsim\GD25941-PA | 275 | GD25941-PA | 67..272 | 54..262 | 238 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11709-PA | 410 | GJ11709-PA | 176..398 | 40..263 | 779 | 60.7 | Plus |
Dvir\GJ18435-PA | 275 | GJ18435-PA | 67..273 | 54..263 | 232 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17620-PA | 271 | GK17620-PA | 1..271 | 1..263 | 1179 | 81 | Plus |
Dwil\GK23558-PA | 240 | GK23558-PA | 1..222 | 1..214 | 920 | 78.6 | Plus |
Dwil\GK24075-PA | 399 | GK24075-PA | 162..387 | 37..263 | 768 | 60.4 | Plus |
Dwil\GK20657-PA | 275 | GK20657-PA | 67..272 | 54..262 | 243 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21674-PA | 263 | GE21674-PA | 1..263 | 1..263 | 1360 | 96.6 | Plus |
Dyak\GE20277-PA | 408 | GE20277-PA | 174..396 | 40..263 | 767 | 60.3 | Plus |
Dyak\GE13050-PA | 274 | GE13050-PA | 14..271 | 5..262 | 252 | 28.9 | Plus |
Translation from 135 to 926
> GH10494.hyp MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF AALFLIDAVYYEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scramb2-PA | 263 | CG1893-PA | 1..263 | 1..263 | 1404 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 182..404 | 40..263 | 761 | 59.8 | Plus |
scramb1-PB | 233 | CG32056-PB | 1..221 | 42..263 | 749 | 59.9 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..320 | 43..263 | 744 | 59.7 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 54..262 | 231 | 30.8 | Plus |