Clone GH10517 Report

Search the DGRC for GH10517

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:105
Well:17
Vector:pOT2
Associated Gene/TranscriptCG10433-RB
Protein status:GH10517.pep: gold
Preliminary Size:1202
Sequenced Size:1125

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10433 2001-01-01 Release 2 assignment
CG10433 2002-03-20 Blastp of sequenced clone
CG10433 2003-01-01 Sim4 clustering to Release 3
CG10433 2008-04-29 Release 5.5 accounting
CG10433 2008-08-15 Release 5.9 accounting
CG10433 2008-12-18 5.12 accounting

Clone Sequence Records

GH10517.complete Sequence

1125 bp (1125 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094699

> GH10517.complete
TTCAACGCAAACCGCGCCATCGAGAGGAAGTGGATTACTGCTGCTGCCAA
GCTGCCAGAGTGAAGTGCATTGAAAGCAGAGCGAATCAGAACGAAATTCA
AAACGTATCACGCATACGCCCGGTAGTACAGCCGAATATCCCCAAATAGC
CGAATATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGCTGGTGAGCAGC
ATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACAAACGATGTGAA
TGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTATCCCAATGACC
GACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGTCGGACTGCATC
GAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCCGGAGAGGGCGT
GGAGTGCTGCTACGAACTCCGATCAAACCCAACACCTGCTTCGCATCGCT
AAAAATCTAACCACAATCAAATTGGCATCGTTACCGAATTACCCGAATAT
CGCCACTAACCCTTGACAACCCGATCCATTCTGTGTGTCCCATCGCCCTC
GAAAACGTCAAACGTCATCCCATTGCCGTTGCAGTGCCGGTCAGACCAGC
GCCCTGTGCGGAACACCTGGGACAGTGCATGGACCGATGCCACCAGAGGC
TCCTGCGACCCGGTTCGGATTGCAAGAATGGCCAAGTCTGCTGCGTCCTG
ATTTAGTTATACTTAACCACACCATACACATACCCGTGCAGAGGAACAGC
ATCGTCAAATGATAACAAAATAGCCTCCAAGTTGGGCAAGTCAGAGTGAC
AATTCTTGAATACCTAAAGTTTATATTCGAGACTTCTAGAATATTCGAAA
AATATTAGACAACACTAACATTAAATTGATTTGACAAAATTGAGTGCTGA
GCGGATTGAAACTAATTTGGTTGTGTCATTCCTCTGTACACATACACACA
CACACACACCGTACATAAACATGTATTTATTTAACTATATGTATATTAAT
TATATTGTACGAATAATTTTGTATGACATCTTAAGAGCCCCAAATCTACC
CACAATGTGAAATATTTGACTGCTTCCAATAAATGCATTGTAAATATTTT
CCAAAAAAAAAAAAAAAAAAAAAAA

GH10517.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-RB 1371 CG10433-RB 270..1371 1..1102 5510 100 Plus
CG10433.a 1284 CG10433.a 523..1048 585..1110 2615 99.8 Plus
CG10433-RA 1331 CG10433-RA 754..1279 585..1110 2615 99.8 Plus
CG10433.a 1284 CG10433.a 106..523 1..418 2090 100 Plus
CG10433-RA 1331 CG10433-RA 337..754 1..418 2090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17492089..17492773 1102..418 3410 99.9 Minus
chr2R 21145070 chr2R 17493094..17493360 267..1 1335 100 Minus
chr2R 21145070 chr2R 17492881..17493030 417..268 750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21605668..21606360 1110..418 3450 99.9 Minus
2R 25286936 2R 21606681..21606947 267..1 1335 100 Minus
2R 25286936 2R 21606468..21606617 417..268 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21606867..21607559 1110..418 3450 99.8 Minus
2R 25260384 2R 21607880..21608146 267..1 1335 100 Minus
2R 25260384 2R 21607667..21607816 417..268 750 100 Minus
Blast to na_te.dros performed 2019-03-16 01:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 425..490 996..928 131 68.1 Minus
transib3 2883 transib3 TRANSIB3 2883bp 2613..2661 971..1018 116 73.5 Plus

GH10517.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:06 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17492089..17492773 418..1102 99 <- Minus
chr2R 17492881..17493030 268..417 100 <- Minus
chr2R 17493094..17493360 1..267 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:05 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 1..297 156..452 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:25:04 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 1..297 156..452 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:32 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 1..297 156..452 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:41 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 1..297 156..452 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:41:51 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 1..297 156..452 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:51:41 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 7..1108 1..1102 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:25:04 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 7..1108 1..1102 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:32 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 11..1112 1..1102 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:41 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 7..1108 1..1102 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:41:51 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 11..1112 1..1102 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:06 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21605676..21606360 418..1102 100 <- Minus
2R 21606468..21606617 268..417 100 <- Minus
2R 21606681..21606947 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:06 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21605676..21606360 418..1102 100 <- Minus
2R 21606468..21606617 268..417 100 <- Minus
2R 21606681..21606947 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:06 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21605676..21606360 418..1102 100 <- Minus
2R 21606468..21606617 268..417 100 <- Minus
2R 21606681..21606947 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:32 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17493181..17493865 418..1102 100 <- Minus
arm_2R 17493973..17494122 268..417 100 <- Minus
arm_2R 17494186..17494452 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:33:46 Download gff for GH10517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21606875..21607559 418..1102 100 <- Minus
2R 21607667..21607816 268..417 100 <- Minus
2R 21607880..21608146 1..267 100   Minus

GH10517.hyp Sequence

Translation from 155 to 451

> GH10517.hyp
MSPRRSLLCCLLVSSILVLHQAQANIETNDVNDPSYYMLQGVRVYPNDRQ
CVMVGGLCVAESDCIEPTSNKGLCPTSAGEGVECCYELRSNPTPASHR*

GH10517.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-PB 98 CG10433-PB 1..98 1..98 529 100 Plus
CG10433-PC 127 CG10433-PC 1..96 1..96 485 93.8 Plus
CG10433-PA 127 CG10433-PA 1..96 1..96 485 93.8 Plus

GH10517.pep Sequence

Translation from 155 to 451

> GH10517.pep
MSPRRSLLCCLLVSSILVLHQAQANIETNDVNDPSYYMLQGVRVYPNDRQ
CVMVGGLCVAESDCIEPTSNKGLCPTSAGEGVECCYELRSNPTPASHR*

GH10517.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12088-PA 129 GF12088-PA 1..100 1..98 335 64 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20765-PA 98 GG20765-PA 1..98 1..98 472 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20050-PA 129 GH20050-PA 1..99 1..97 219 49 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-PB 98 CG10433-PB 1..98 1..98 529 100 Plus
CG10433-PC 127 CG10433-PC 1..96 1..96 485 93.8 Plus
CG10433-PA 127 CG10433-PA 1..96 1..96 485 93.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20459-PA 130 GI20459-PA 11..99 10..98 267 62.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17485-PA 129 GL17485-PA 1..98 1..96 325 64.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10315-PA 129 GA10315-PA 1..98 1..96 325 64.3 Plus
Dpse\GA10315-PB 127 GA10315-PB 1..89 1..87 316 67.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15708-PA 98 GM15708-PA 1..98 1..98 505 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25186-PA 98 GD25186-PA 1..98 1..98 508 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22309-PA 128 GJ22309-PA 10..99 11..98 272 64.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22257-PA 128 GK22257-PA 11..99 10..98 250 56.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13697-PA 98 GE13697-PA 1..97 1..97 462 88.7 Plus