GH10531.complete Sequence
814 bp (814 high quality bases) assembled on 2003-01-15
GenBank Submission: AY075326
> GH10531.complete
CGCACCCAAACTGACGGCTCCAGTTCAAGACGGAAAGTTCGGAAAGAAAA
TTCCCTGAAAAATCAGTGAAAATTAAGAAAATATTCATAAAGCACTAGCT
AAAATTAAGAAAAGCTTGAGATAAGTTTTGGGGCGTGGGCCAGCGAAATC
CCAATGCGAAAAAATATAAATTAGCCATGTCCCTGGAGTAAGTGAAAAGT
GTGGAAAAATCATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCAGCATC
CTGGTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGAAGAAG
AAGACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGTAAAGG
AAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAACCGTT
TCTTAGTCCCCGAAAAACGAAAACTATCTCTCTATTTCTCTTCTCCTTAG
CTAGCTTACGATTTTACAGCAATGATTTGATTTTTTTCTTAAATTTACGC
TTTGCGCTGGCAGCGCCGCCTTGGCAGGTTCTCCAAGCTCTCATTGCCAA
CCACCAAGTACCAAGTACCAACTACCACCGGCCCTCCAGCTCCTGGCATC
CAACGTTTCGTGTATATAGCTTAGCCACACAACTCCCAAAAGAACAGCAA
CAACTACCAAATGTACTGGATTTAGTAGCTATATAGCAAATAGACCAGCA
ACAACAACCGCCACACAAATCTCGACTTGCGATTGCCCGAAAAAATGGGT
CTTGGGGAATCTGTCGGGGCGTCGCTGCTGCAGCGCTGCAAAAAAAAAAA
AAAAAAAAAAAAAA
GH10531.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAcRbeta-64B-RB | 809 | nAcRbeta-64B-RB | 21..809 | 1..789 | 3825 | 98.9 | Plus |
nAcRbeta-64B.b | 2300 | nAcRbeta-64B.b | 19..293 | 1..275 | 1375 | 100 | Plus |
nAcRbeta-64B.a | 2529 | nAcRbeta-64B.a | 213..364 | 124..275 | 760 | 100 | Plus |
nAcRbeta-64B.a | 2529 | nAcRbeta-64B.a | 27..151 | 1..125 | 625 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 4428956..4429621 | 124..789 | 3210 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 4428770..4428894 | 1..125 | 625 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4429564..4430250 | 124..810 | 3315 | 98.8 | Plus |
3L | 28110227 | 3L | 4429378..4429502 | 1..125 | 625 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 4429564..4430250 | 124..810 | 3315 | 98.8 | Plus |
3L | 28103327 | 3L | 4429378..4429502 | 1..125 | 625 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 19:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 5766..5836 | 44..113 | 118 | 66.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 495..559 | 648..715 | 116 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2407 | 623..715 | 114 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2481 | 621..726 | 109 | 57 | Plus |
GH10531.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:25 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 4428770..4428894 | 1..125 | 100 | -> | Plus |
chr3L | 4428958..4429621 | 126..789 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:08 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..195 | 212..406 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:58 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..195 | 212..406 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:43 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..195 | 212..406 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:56 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..195 | 212..406 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:04 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRbeta1-RB | 1..195 | 212..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:32 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..789 | 1..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:58 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..789 | 1..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:43 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 30..818 | 1..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:56 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRbeta-64B-RB | 1..789 | 1..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:04 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRbeta1-RB | 30..818 | 1..789 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:25 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429378..4429502 | 1..125 | 100 | -> | Plus |
3L | 4429566..4430229 | 126..789 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:25 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429378..4429502 | 1..125 | 100 | -> | Plus |
3L | 4429566..4430229 | 126..789 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:25 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429378..4429502 | 1..125 | 100 | -> | Plus |
3L | 4429566..4430229 | 126..789 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:43 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4429378..4429502 | 1..125 | 100 | -> | Plus |
arm_3L | 4429566..4430229 | 126..789 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:07 Download gff for
GH10531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4429566..4430229 | 126..789 | 98 | | Plus |
3L | 4429378..4429502 | 1..125 | 100 | -> | Plus |
GH10531.pep Sequence
Translation from 211 to 405
> GH10531.pep
MESSCKSWLLCSILVLVAFSLGTYFGLRRRRLPRPLSGKGRYVIVKERNA
NEGLKTLLTLLTVS*
GH10531.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-PB | 64 | CG11348-PB | 1..64 | 1..64 | 322 | 100 | Plus |
GH10531.hyp Sequence
Translation from 211 to 405
> GH10531.hyp
MESSCKSWLLCSILVLVAFSLGTYFGLRRRRLPRPLSGKGRYVIVKERNA
NEGLKTLLTLLTVS*
GH10531.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRbeta1-PB | 64 | CG11348-PB | 1..64 | 1..64 | 322 | 100 | Plus |