Clone GH10531 Report

Search the DGRC for GH10531

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:105
Well:31
Vector:pOT2
Associated Gene/TranscriptnAChRbeta1-RB
Protein status:GH10531.pep: gold
Preliminary Size:1300
Sequenced Size:814

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12606 2001-01-01 Release 2 assignment
CG11348 2001-01-01 Release 2 assignment
CG11348 2003-01-01 Sim4 clustering to Release 3
CG11348 2003-01-15 Blastp of sequenced clone
nAcRbeta-64B 2008-04-29 Release 5.5 accounting
nAcRbeta-64B 2008-08-15 Release 5.9 accounting
nAcRbeta-64B 2008-12-18 5.12 accounting

Clone Sequence Records

GH10531.complete Sequence

814 bp (814 high quality bases) assembled on 2003-01-15

GenBank Submission: AY075326

> GH10531.complete
CGCACCCAAACTGACGGCTCCAGTTCAAGACGGAAAGTTCGGAAAGAAAA
TTCCCTGAAAAATCAGTGAAAATTAAGAAAATATTCATAAAGCACTAGCT
AAAATTAAGAAAAGCTTGAGATAAGTTTTGGGGCGTGGGCCAGCGAAATC
CCAATGCGAAAAAATATAAATTAGCCATGTCCCTGGAGTAAGTGAAAAGT
GTGGAAAAATCATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCAGCATC
CTGGTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGAAGAAG
AAGACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGTAAAGG
AAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAACCGTT
TCTTAGTCCCCGAAAAACGAAAACTATCTCTCTATTTCTCTTCTCCTTAG
CTAGCTTACGATTTTACAGCAATGATTTGATTTTTTTCTTAAATTTACGC
TTTGCGCTGGCAGCGCCGCCTTGGCAGGTTCTCCAAGCTCTCATTGCCAA
CCACCAAGTACCAAGTACCAACTACCACCGGCCCTCCAGCTCCTGGCATC
CAACGTTTCGTGTATATAGCTTAGCCACACAACTCCCAAAAGAACAGCAA
CAACTACCAAATGTACTGGATTTAGTAGCTATATAGCAAATAGACCAGCA
ACAACAACCGCCACACAAATCTCGACTTGCGATTGCCCGAAAAAATGGGT
CTTGGGGAATCTGTCGGGGCGTCGCTGCTGCAGCGCTGCAAAAAAAAAAA
AAAAAAAAAAAAAA

GH10531.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
nAcRbeta-64B-RB 809 nAcRbeta-64B-RB 21..809 1..789 3825 98.9 Plus
nAcRbeta-64B.b 2300 nAcRbeta-64B.b 19..293 1..275 1375 100 Plus
nAcRbeta-64B.a 2529 nAcRbeta-64B.a 213..364 124..275 760 100 Plus
nAcRbeta-64B.a 2529 nAcRbeta-64B.a 27..151 1..125 625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4428956..4429621 124..789 3210 98.8 Plus
chr3L 24539361 chr3L 4428770..4428894 1..125 625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4429564..4430250 124..810 3315 98.8 Plus
3L 28110227 3L 4429378..4429502 1..125 625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4429564..4430250 124..810 3315 98.8 Plus
3L 28103327 3L 4429378..4429502 1..125 625 100 Plus
Blast to na_te.dros performed 2019-03-15 19:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 5766..5836 44..113 118 66.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 495..559 648..715 116 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2407 623..715 114 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2481 621..726 109 57 Plus

GH10531.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:25 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4428770..4428894 1..125 100 -> Plus
chr3L 4428958..4429621 126..789 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:08 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..195 212..406 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:58 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..195 212..406 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:43 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..195 212..406 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:56 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..195 212..406 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:04 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RB 1..195 212..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:32 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..789 1..789 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:58 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..789 1..789 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:43 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 30..818 1..789 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:56 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RB 1..789 1..789 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:04 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RB 30..818 1..789 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:25 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429378..4429502 1..125 100 -> Plus
3L 4429566..4430229 126..789 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:25 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429378..4429502 1..125 100 -> Plus
3L 4429566..4430229 126..789 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:25 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429378..4429502 1..125 100 -> Plus
3L 4429566..4430229 126..789 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:43 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4429378..4429502 1..125 100 -> Plus
arm_3L 4429566..4430229 126..789 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:07 Download gff for GH10531.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429566..4430229 126..789 98   Plus
3L 4429378..4429502 1..125 100 -> Plus

GH10531.pep Sequence

Translation from 211 to 405

> GH10531.pep
MESSCKSWLLCSILVLVAFSLGTYFGLRRRRLPRPLSGKGRYVIVKERNA
NEGLKTLLTLLTVS*

GH10531.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-PB 64 CG11348-PB 1..64 1..64 322 100 Plus

GH10531.hyp Sequence

Translation from 211 to 405

> GH10531.hyp
MESSCKSWLLCSILVLVAFSLGTYFGLRRRRLPRPLSGKGRYVIVKERNA
NEGLKTLLTLLTVS*

GH10531.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-PB 64 CG11348-PB 1..64 1..64 322 100 Plus