Clone GH10582 Report

Search the DGRC for GH10582

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:105
Well:82
Vector:pOT2
Associated Gene/Transcriptpinta-RA
Protein status:GH10582.pep: gold
Preliminary Size:1205
Sequenced Size:1129

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13848 2001-01-01 Release 2 assignment
CG13848 2003-01-01 Sim4 clustering to Release 3
CG13848 2003-03-12 Blastp of sequenced clone
pinta 2008-04-29 Release 5.5 accounting
pinta 2008-08-15 Release 5.9 accounting
pinta 2008-12-18 5.12 accounting

Clone Sequence Records

GH10582.complete Sequence

1129 bp (1129 high quality bases) assembled on 2003-03-12

GenBank Submission: BT005203

> GH10582.complete
CCATGTGGTCGCGCAGCAGCAGTTCCAAAAGACAAGTGGCCACCACCGAT
GGTGACCCCGAAAGGGTTTTGGCGCAGGTCCAGGATCTCAGCGACTGGCT
CGTCGCCAATCCGCAGATCAACGGATGCAACACCTTCGAGAACCTGCACT
TCTTCCTCCGCACCTCCAAGTTCGATGTGGAACGGGCCAAAAAGAAACTG
AAAACGTTCTACCAAATGCGGGCGGAGCGCACCGAATGGTTCGATAATCG
CGATCCCCAATTGCCCGAGATCCAGGACCTACTCAAGCTGGGCGTCTTCC
TACCCATCGGTCCGGATGCCGAACAAAGGATGGTGGTGGTCATACGCACA
GCAGCACACGATCCCAAGCTCCACAGCCAGAACAATGTTTTTAAAACCAG
CAAAATGATATTGGACCTGCTGCTAAAGCTCGATCCGGAGACCTGTGCCC
GCGGAATGGTGGCTATTCTGGATATGCAGGGCGTTCAACTGGGGCACGCT
CTTCAAATGAATCCGAAGCTCATCAAGAGATCCGTGGAAAGCTGGACCGC
ATATCCATGTCAGCCCAAGCTATTGGAATTCACCAACGCCCCGCGCCATG
TGAACTTCTTTTTGAACACCTTTAGAATATTCATGACGCCCAAGATAAGA
TCGCGACTTTTCGTGCGTCGTGAAGGAACATCCGTGAGCTGCGATCAGTT
GCCAAAGGAACTCGGTGGTCAGGGATTAAGCTATATGGAGCTGTCTGTGA
AGTGGAAGCAGTTGGTCGAGGAGAACGCCGATTTCTATGTGGAACAAGAC
AAATACAAAAGCAAGCTCAAGTGATTGGGGTTAGTGTGGCGGCAGTGATA
ACAAGGCGATTAGCCGAATGTTATAGATTAGTCGAAAACATTTACAATGC
GCAAATGCACAAAGGCGCATATCAGTTGTCATATTTTATGGAAGGGTACT
ACAAATACTCCCTAATTCCCCACTTAACCATATTTGTATATATTATAAGT
CATTACGTTAAACCTTTTTAAAAAAGGTTATTTTCGTTGTGTTAATCATC
AATGTTATCTTTTTTTTTTTGCTTAATAAAGTGTCAATACACGATAAACC
AAACAAAAAAAAAAAAAAAAAAAAAAAAA

GH10582.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-RA 1298 pinta-RA 184..1293 1..1110 5550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18246868..18247351 1104..621 2420 100 Minus
chr3R 27901430 chr3R 18247850..18248244 395..1 1960 99.7 Minus
chr3R 27901430 chr3R 18247404..18247633 625..396 1150 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22423310..22423799 1110..621 2450 100 Minus
3R 32079331 3R 22424298..22424692 395..1 1975 100 Minus
3R 32079331 3R 22423852..22424081 625..396 1150 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22164141..22164630 1110..621 2450 100 Minus
3R 31820162 3R 22165129..22165523 395..1 1975 100 Minus
3R 31820162 3R 22164683..22164912 625..396 1150 100 Minus
Blast to na_te.dros performed 2019-03-16 07:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 485..532 1098..1051 141 77.1 Minus

GH10582.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:38:54 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18246868..18247346 626..1104 100 <- Minus
chr3R 18247404..18247633 396..625 100 <- Minus
chr3R 18247850..18248244 1..395 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:10 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 1..822 3..824 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:31 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 1..822 3..824 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:33:41 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 1..822 3..824 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:59 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 1..822 3..824 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:43 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 1..822 3..824 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:58:00 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 34..1137 1..1104 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:31 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 34..1137 1..1104 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:41 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 34..1137 1..1104 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:59 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 34..1137 1..1104 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:43 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 34..1137 1..1104 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:54 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22423316..22423794 626..1104 100 <- Minus
3R 22423852..22424081 396..625 100 <- Minus
3R 22424298..22424692 1..395 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:54 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22423316..22423794 626..1104 100 <- Minus
3R 22423852..22424081 396..625 100 <- Minus
3R 22424298..22424692 1..395 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:54 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22423316..22423794 626..1104 100 <- Minus
3R 22423852..22424081 396..625 100 <- Minus
3R 22424298..22424692 1..395 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:41 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18249574..18249803 396..625 100 <- Minus
arm_3R 18249038..18249516 626..1104 100 <- Minus
arm_3R 18250020..18250414 1..395 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:10 Download gff for GH10582.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22164147..22164625 626..1104 100 <- Minus
3R 22164683..22164912 396..625 100 <- Minus
3R 22165129..22165523 1..395 100   Minus

GH10582.pep Sequence

Translation from 2 to 823

> GH10582.pep
MWSRSSSSKRQVATTDGDPERVLAQVQDLSDWLVANPQINGCNTFENLHF
FLRTSKFDVERAKKKLKTFYQMRAERTEWFDNRDPQLPEIQDLLKLGVFL
PIGPDAEQRMVVVIRTAAHDPKLHSQNNVFKTSKMILDLLLKLDPETCAR
GMVAILDMQGVQLGHALQMNPKLIKRSVESWTAYPCQPKLLEFTNAPRHV
NFFLNTFRIFMTPKIRSRLFVRREGTSVSCDQLPKELGGQGLSYMELSVK
WKQLVEENADFYVEQDKYKSKLK*

GH10582.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16567-PA 273 GF16567-PA 1..273 1..273 1298 89.7 Plus
Dana\GF15442-PA 313 GF15442-PA 23..285 19..273 306 27.4 Plus
Dana\GF24441-PA 310 GF24441-PA 23..282 19..270 274 26.9 Plus
Dana\GF12489-PA 311 GF12489-PA 26..286 19..273 264 28.1 Plus
Dana\GF25066-PA 311 GF25066-PA 14..283 9..270 262 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12518-PA 273 GG12518-PA 1..273 1..273 1428 97.1 Plus
Dere\GG23602-PA 313 GG23602-PA 23..285 19..273 309 28.1 Plus
Dere\GG14766-PA 324 GG14766-PA 37..296 19..270 280 27.3 Plus
Dere\GG25270-PA 313 GG25270-PA 28..288 19..273 274 28.7 Plus
Dere\GG15223-PA 311 GG15223-PA 23..283 18..270 248 26.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17504-PA 284 GH17504-PA 34..283 25..273 1064 78.4 Plus
Dgri\GH13581-PA 314 GH13581-PA 25..287 19..273 299 28.4 Plus
Dgri\GH15439-PA 324 GH15439-PA 22..296 4..270 277 24.7 Plus
Dgri\GH15199-PA 308 GH15199-PA 24..283 19..273 276 28.2 Plus
Dgri\GH22856-PA 316 GH22856-PA 31..291 19..273 266 28.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-PB 273 CG13848-PB 1..273 1..273 1428 100 Plus
pinta-PA 273 CG13848-PA 1..273 1..273 1428 100 Plus
CG31636-PB 313 CG31636-PB 23..280 19..268 290 28.3 Plus
CG31636-PA 313 CG31636-PA 23..280 19..268 290 28.3 Plus
CG33966-PA 310 CG33966-PA 23..280 19..268 281 26.7 Plus
CG12926-PA 313 CG12926-PA 28..288 19..273 259 27.8 Plus
CG33514-PA 311 CG33514-PA 23..277 18..264 239 25.5 Plus
CG2663-PC 308 CG2663-PC 23..280 18..270 230 29.2 Plus
CG2663-PA 308 CG2663-PA 23..280 18..270 230 29.2 Plus
CG33965-PA 317 CG33965-PA 28..256 19..239 225 28.4 Plus
CG30339-PA 308 CG30339-PA 8..278 6..268 193 25.4 Plus
CG3823-PA 295 CG3823-PA 9..273 18..273 186 22.9 Plus
CG1902-PC 312 CG1902-PC 22..276 18..268 180 23.1 Plus
CG1902-PA 312 CG1902-PA 22..276 18..268 180 23.1 Plus
Cralbp-PA 324 CG10546-PA 34..280 26..267 176 25.6 Plus
CG10657-PA 334 CG10657-PA 39..290 8..257 170 23.7 Plus
CG3091-PC 303 CG3091-PC 25..289 25..268 154 23.7 Plus
CG3091-PA 303 CG3091-PA 25..289 25..268 154 23.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10372-PA 283 GI10372-PA 33..282 25..273 1092 80 Plus
Dmoj\GI24205-PA 314 GI24205-PA 25..282 19..268 286 27.4 Plus
Dmoj\GI16717-PA 308 GI16717-PA 23..283 18..273 281 30.3 Plus
Dmoj\GI13038-PA 318 GI13038-PA 29..257 19..239 275 28.8 Plus
Dmoj\GI21233-PA 313 GI21233-PA 29..288 20..273 260 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23338-PA 2398 GL23338-PA 2271..2398 132..259 616 86.7 Plus
Dper\GL26205-PA 313 GL26205-PA 23..251 19..239 290 30.6 Plus
Dper\GL17330-PA 311 GL17330-PA 26..286 19..273 277 28 Plus
Dper\GL16163-PA 311 GL16163-PA 14..283 9..270 268 24.8 Plus
Dper\GL16161-PA 313 GL16161-PA 23..260 19..248 248 28.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12568-PA 274 GA12568-PA 1..274 1..273 1271 85 Plus
Dpse\GA16352-PA 313 GA16352-PA 23..251 19..239 290 30.6 Plus
Dpse\GA11913-PA 311 GA11913-PA 26..286 19..273 278 28.4 Plus
Dpse\GA28411-PA 311 GA28411-PA 14..283 9..270 268 24.8 Plus
Dpse\GA28527-PA 311 GA28527-PA 24..283 19..270 255 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23653-PA 273 GM23653-PA 1..273 1..273 1447 98.2 Plus
Dsec\GM14034-PA 313 GM14034-PA 23..285 19..273 308 28.6 Plus
Dsec\GM20588-PA 313 GM20588-PA 28..288 19..273 260 28.5 Plus
Dsec\GM14655-PA 311 GM14655-PA 23..283 18..270 237 26.3 Plus
Dsec\GM14385-PA 317 GM14385-PA 28..256 19..239 232 27.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18460-PA 273 GD18460-PA 1..273 1..273 1453 98.9 Plus
Dsim\GD22558-PA 313 GD22558-PA 23..285 19..273 308 28.6 Plus
Dsim\GD13840-PA 311 GD13840-PA 23..283 18..270 236 26 Plus
Dsim\GD19620-PA 308 GD19620-PA 23..280 18..270 231 29.2 Plus
Dsim\GD10061-PA 308 GD10061-PA 8..278 6..268 193 24.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22834-PA 283 GJ22834-PA 33..282 25..273 1093 80 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 23..282 19..270 288 27.7 Plus
Dvir\GJ21474-PA 314 GJ21474-PA 25..253 19..239 282 31 Plus
Dvir\GJ12134-PA 318 GJ12134-PA 29..257 19..239 257 28.8 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 23..283 18..273 256 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14187-PA 273 GK14187-PA 1..273 1..273 1243 81.7 Plus
Dwil\GK18277-PA 317 GK18277-PA 27..289 19..273 281 26.2 Plus
Dwil\GK11682-PA 311 GK11682-PA 24..283 19..270 279 28.1 Plus
Dwil\GK21135-PA 310 GK21135-PA 23..282 19..270 266 25.4 Plus
Dwil\GK15622-PA 313 GK15622-PA 28..288 19..273 264 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24040-PA 273 GE24040-PA 1..273 1..273 1448 98.5 Plus
Dyak\GE18422-PA 313 GE18422-PA 23..285 19..273 298 27.4 Plus
Dyak\GE22148-PA 313 GE22148-PA 28..288 19..273 273 28.3 Plus
Dyak\GE21129-PA 310 GE21129-PA 23..282 19..270 269 26.5 Plus
Dyak\GE21443-PA 311 GE21443-PA 23..283 18..270 258 27.1 Plus

GH10582.hyp Sequence

Translation from 2 to 823

> GH10582.hyp
MWSRSSSSKRQVATTDGDPERVLAQVQDLSDWLVANPQINGCNTFENLHF
FLRTSKFDVERAKKKLKTFYQMRAERTEWFDNRDPQLPEIQDLLKLGVFL
PIGPDAEQRMVVVIRTAAHDPKLHSQNNVFKTSKMILDLLLKLDPETCAR
GMVAILDMQGVQLGHALQMNPKLIKRSVESWTAYPCQPKLLEFTNAPRHV
NFFLNTFRIFMTPKIRSRLFVRREGTSVSCDQLPKELGGQGLSYMELSVK
WKQLVEENADFYVEQDKYKSKLK*

GH10582.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-PB 273 CG13848-PB 1..273 1..273 1428 100 Plus
pinta-PA 273 CG13848-PA 1..273 1..273 1428 100 Plus
CG31636-PB 313 CG31636-PB 23..280 19..268 290 28.3 Plus
CG31636-PA 313 CG31636-PA 23..280 19..268 290 28.3 Plus
CG33966-PA 310 CG33966-PA 23..280 19..268 281 26.7 Plus