Clone GH10609 Report

Search the DGRC for GH10609

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:9
Vector:pOT2
Associated Gene/Transcriptyellow-d-RA
Protein status:GH10609.pep: gold
Sequenced Size:1857

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9889 2002-12-10 Blastp of sequenced clone
CG9889 2003-01-01 Sim4 clustering to Release 3
yellow-d 2008-04-29 Release 5.5 accounting
yellow-d 2008-08-15 Release 5.9 accounting
yellow-d 2008-12-18 5.12 accounting

Clone Sequence Records

GH10609.complete Sequence

1857 bp (1857 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003303

> GH10609.complete
CCTGCTCGTCTTCAAGCCACCAAGCTAAAAAGCCTGTTTTCAGTTGATAG
TTGGCTACCGAAGTGAGACGTCGAAGAAAGTGTCGTTAGATCGGGGTCAC
CGTATTAAATTATTCCGCATTGTTAGGCCGCATCTGGCCAAATATCAACA
GACCCTTGCTCTTAATTGGTCGTCAACAAGTAGACAAAGCCAGGCCGCGG
TCCACACTCTTCGATCTCCGCCAGCCAGCCTGCCTGCCTCTCTGCCACTT
ATCAACGCCTCAGGAACCAACTTGCTTGATAAGCAGCTGCCCTTAGTTCG
AACAGAACATTTACCATCCGACTCTGCTGCGGAATGGTTATGATGCCCCT
CCGGATACTGCTGATCGCCTTTTCGCTGACGCTAGCCCAGAGCTATGGCG
TCGGTGTCAATGGACCGCGTCCCGTGCGCACTGTAGAAACGCTGACGCAG
TGGGGCCAGCTGGAGTTCGGATTTCCCACGGCGCAGGATCGGGAGAACGC
TCAGGCGGCGGGTAATCTGGTGCCCGAGAACGGCACTCCCATCGATGTGC
AGCCACAGTACATGGCCAATGGCCAGATCAGGCTGTTCACCACTATTCCG
CGCTTCGTGACGGGCATTCCCTACACCTTGGCCACCGTTTCAGCGACGCA
GGGCAGGAATGGCCCGCTGCTGCAGCCGTATCCCAACTACTCCTGGCACA
ATGCCAACGGCGAGGACTGCGATCGCATAACATCCGCATTCAGAGTGGCT
ATCACCGAGTGCAACCAGATGTGGGTGATCGATTCGGGTGTGATTGGAAC
CACCCAGCTGTGTCCGCCGCAGTTGCTGCAGTTCGCCCTGGCCACCGATC
GCTTGCTGCATCGCTTCCGCTTCCCGAACGACACATACATCCCGAGTGGA
TCGCTCTTCATCACGCCAAATGTACTCGTCCAGGATCCTCCGCCTAGGGG
AACCTGCAGTCGCACCATGATCTATGTGGCCGATGTGAGCTATCATGGCT
TGGTGGTCTACGACCACCAGGCGCAGACATCATGGCGGGCTGAGAACCGC
TTTATGTATCCCGATCCGGACTACGGCAAGCACACCATAGCAGGCGAGAG
CTTCTACCTGATGGACGGCATGTTTGCACTGAACAACGACAAGCGCAATC
TTTACTTCCATCCGCTGGCCAGTGCAAGTGAGTATTCCGTGCCACTGAGT
GCTTTGAACCGGCAGCAGAACTGGGCCAACGGGCCGGAGGCTCTGCCGGA
GGAGTTCAGGCTGCTAGGCAGGCGGCGGAGCGAGTGCGCCGCGTCCGCCA
TCGATGGCAGGAACAACGTCTACTGCGTCACCTTCAATCCCGTCAAGCTC
TTTGTGTGGAACGTGAACTCGCCGTACAATTCGCGAAACTTTGGCAATCT
GCCAGCCAAGTCCGATGACCTGCAGTTCGTCAGCGGCATGAAGGTGTTGC
GGAACCGCGAAGGGCAGGAGGAACTCTGGATGCTCTCCAATCGCTACCAG
AAAATCGCCGCAGGTACGCTGAACTCGAAGGAGGTCAACTTCCGCATCCT
GCGCCGCAAGTTGGATGATGTCCAGGGCGGCGTCTTCTTCTCCAACGACG
AGGATCTAACCAATCGCCTGGTGTTTAGCTAGTGACTTAGCAAATCCACT
TAATTAATATATGTAAATATTAGTTTTGTTGTGCACTTCACTGGGGGATC
GTTGCGAATTCCGCCTAAGTGCTAATAACAGCCTATCTGAAATTGTAAAG
ATTCCGCAAATCCTAAGAAATATATATGACGTGTAAATATTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

GH10609.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d-RA 2047 yellow-d-RA 190..1982 1..1793 8950 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19265655..19266404 751..1500 3660 99.2 Plus
chr2R 21145070 chr2R 19264851..19265600 1..750 3645 99.1 Plus
chr2R 21145070 chr2R 19266464..19266756 1499..1791 1420 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23378533..23379282 1..750 3750 100 Plus
2R 25286936 2R 23379337..23380086 751..1500 3750 100 Plus
2R 25286936 2R 23380146..23380440 1499..1793 1460 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23380536..23381285 751..1500 3750 100 Plus
2R 25260384 2R 23379732..23380481 1..750 3750 100 Plus
2R 25260384 2R 23381345..23381639 1499..1793 1460 99.6 Plus
2R 25260384 2R 23383166..23383253 1033..1120 155 78.4 Plus
Blast to na_te.dros performed on 2019-03-15 17:23:12 has no hits.

GH10609.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:24:20 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19264851..19265600 1..750 99 -> Plus
chr2R 19265655..19266404 751..1500 99 -> Plus
chr2R 19266466..19266756 1501..1791 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:16 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1299 334..1632 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:29 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1299 334..1632 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:34:03 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1299 334..1632 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:49 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1299 334..1632 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:39 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1299 334..1632 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:20:38 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1791 1..1791 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:29 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1791 1..1791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:34:03 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1751 41..1791 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:50 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1791 1..1791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:39 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d-RA 1..1751 41..1791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:20 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23378533..23379282 1..750 100 -> Plus
2R 23379337..23380086 751..1500 100 -> Plus
2R 23380148..23380438 1501..1791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:20 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23378533..23379282 1..750 100 -> Plus
2R 23379337..23380086 751..1500 100 -> Plus
2R 23380148..23380438 1501..1791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:20 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23378533..23379282 1..750 100 -> Plus
2R 23379337..23380086 751..1500 100 -> Plus
2R 23380148..23380438 1501..1791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:34:03 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19267671..19267961 1501..1791 99   Plus
arm_2R 19266056..19266805 1..750 100 -> Plus
arm_2R 19266860..19267609 751..1500 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:53 Download gff for GH10609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23379750..23380499 1..750 100 -> Plus
2R 23380554..23381303 751..1500 100 -> Plus
2R 23381365..23381655 1501..1791 99   Plus

GH10609.pep Sequence

Translation from 333 to 1631

> GH10609.pep
MVMMPLRILLIAFSLTLAQSYGVGVNGPRPVRTVETLTQWGQLEFGFPTA
QDRENAQAAGNLVPENGTPIDVQPQYMANGQIRLFTTIPRFVTGIPYTLA
TVSATQGRNGPLLQPYPNYSWHNANGEDCDRITSAFRVAITECNQMWVID
SGVIGTTQLCPPQLLQFALATDRLLHRFRFPNDTYIPSGSLFITPNVLVQ
DPPPRGTCSRTMIYVADVSYHGLVVYDHQAQTSWRAENRFMYPDPDYGKH
TIAGESFYLMDGMFALNNDKRNLYFHPLASASEYSVPLSALNRQQNWANG
PEALPEEFRLLGRRRSECAASAIDGRNNVYCVTFNPVKLFVWNVNSPYNS
RNFGNLPAKSDDLQFVSGMKVLRNREGQEELWMLSNRYQKIAAGTLNSKE
VNFRILRRKLDDVQGGVFFSNDEDLTNRLVFS*

GH10609.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11856-PA 428 GF11856-PA 1..428 3..432 1988 84.4 Plus
Dana\GF19909-PA 404 GF19909-PA 7..400 31..416 896 42.1 Plus
Dana\GF11858-PA 411 GF11858-PA 1..407 4..416 828 41.8 Plus
Dana\GF17381-PA 418 GF17381-PA 1..402 3..413 586 34 Plus
Dana\GF15359-PA 453 GF15359-PA 27..395 39..412 413 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22849-PA 429 GG22849-PA 1..428 3..432 2142 93 Plus
Dere\GG17051-PA 440 GG17051-PA 40..440 28..419 853 41.6 Plus
Dere\GG22850-PA 412 GG22850-PA 31..408 43..416 801 41.9 Plus
Dere\GG17052-PA 409 GG17052-PA 1..391 8..413 555 35.2 Plus
Dere\GG16380-PA 459 GG16380-PA 49..432 34..415 511 31.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21215-PA 446 GH21215-PA 13..446 6..432 1720 71.7 Plus
Dgri\GH21214-PA 428 GH21214-PA 40..422 30..414 1582 73 Plus
Dgri\GH21216-PA 431 GH21216-PA 8..428 6..417 800 39.5 Plus
Dgri\GH18543-PA 416 GH18543-PA 7..401 8..413 551 30.8 Plus
Dgri\GH23996-PA 455 GH23996-PA 45..426 33..413 497 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d-PA 432 CG9889-PA 1..432 1..432 2298 100 Plus
yellow-e2-PB 435 CG17044-PB 1..431 1..416 871 40.3 Plus
yellow-d2-PA 412 CG9891-PA 31..408 43..416 769 41.4 Plus
yellow-e3-PA 409 CG17045-PA 19..391 31..413 555 35.8 Plus
yellow-h-PA 463 CG1629-PA 53..434 34..413 485 29.4 Plus
yellow-b-PB 453 CG17914-PB 27..389 39..406 406 31.4 Plus
yellow-b-PA 453 CG17914-PA 27..389 39..406 406 31.4 Plus
yellow-c-PB 438 CG4182-PB 27..433 34..416 389 27.4 Plus
yellow-c-PA 438 CG4182-PA 27..433 34..416 389 27.4 Plus
y-PA 541 CG3757-PA 31..391 40..405 382 29 Plus
yellow-e-PA 530 CG9792-PA 66..390 83..410 375 28.2 Plus
yellow-f2-PA 452 CG8063-PA 112..441 83..409 339 28.1 Plus
yellow-f-PB 418 CG18550-PB 31..406 39..408 314 25.9 Plus
yellow-f-PC 413 CG18550-PC 64..401 74..408 308 26.8 Plus
yellow-f-PA 429 CG18550-PA 80..417 74..408 308 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20501-PA 443 GI20501-PA 8..443 1..432 1690 68.1 Plus
Dmoj\GI20502-PA 429 GI20502-PA 7..426 6..417 795 39.4 Plus
Dmoj\GI23242-PA 408 GI23242-PA 27..395 31..413 559 32.3 Plus
Dmoj\GI11002-PA 470 GI11002-PA 58..440 36..413 466 29.4 Plus
Dmoj\GI13248-PA 432 GI13248-PA 1..427 3..416 419 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17570-PA 434 GL17570-PA 25..433 24..432 1825 80.2 Plus
Dper\GL23986-PA 429 GL23986-PA 38..423 39..416 886 43 Plus
Dper\GL17571-PA 418 GL17571-PA 26..414 32..416 771 38.9 Plus
Dper\GL23987-PA 409 GL23987-PA 44..389 69..413 546 34.7 Plus
Dper\GL18156-PA 466 GL18156-PA 55..431 34..407 465 30.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22103-PA 434 GA22103-PA 25..433 24..432 1825 80.2 Plus
Dpse\GA14291-PB 426 GA14291-PB 3..420 14..416 892 41.6 Plus
Dpse\GA22105-PA 422 GA22105-PA 30..418 32..416 765 38.4 Plus
Dpse\GA14292-PA 409 GA14292-PA 44..389 69..413 546 34.7 Plus
Dpse\GA27858-PA 427 GA27858-PA 16..392 34..407 469 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16007-PA 430 GM16007-PA 1..430 3..432 2234 96.5 Plus
Dsec\GM25936-PA 426 GM25936-PA 26..422 28..416 873 41.8 Plus
Dsec\GM16008-PA 412 GM16008-PA 31..408 43..416 763 39.5 Plus
Dsec\GM25937-PA 409 GM25937-PA 2..391 6..413 565 35.1 Plus
Dsec\GM17203-PA 453 GM17203-PA 27..389 39..406 415 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11758-PA 432 GD11758-PA 1..432 1..432 2250 96.8 Plus
Dsim\GD20498-PA 426 GD20498-PA 26..422 28..416 880 42.1 Plus
Dsim\GD11759-PA 412 GD11759-PA 31..408 43..416 786 41.1 Plus
Dsim\GD20499-PA 387 GD20499-PA 2..368 6..364 471 33.8 Plus
Dsim\GD24079-PA 453 GD24079-PA 27..389 39..406 409 31.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22351-PA 453 GJ22351-PA 50..453 29..432 1709 73.5 Plus
Dvir\GJ22352-PA 430 GJ22352-PA 36..427 32..417 804 40.7 Plus
Dvir\GJ10739-PA 415 GJ10739-PA 1..399 3..413 602 34.4 Plus
Dvir\GJ14923-PA 455 GJ14923-PA 36..426 26..413 498 30.8 Plus
Dvir\GJ11869-PA 435 GJ11869-PA 24..431 34..417 427 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23284-PA 446 GK23284-PA 43..446 29..432 1813 79.7 Plus
Dwil\GK13343-PA 420 GK13343-PA 15..412 27..416 885 42 Plus
Dwil\GK23285-PA 422 GK23285-PA 5..418 6..416 783 38.5 Plus
Dwil\GK13344-PA 401 GK13344-PA 40..381 66..413 535 33.5 Plus
Dwil\GK13672-PA 468 GK13672-PA 52..440 29..417 487 30.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14284-PA 430 GE14284-PA 1..430 3..432 2195 94.4 Plus
Dyak\GE24439-PA 440 GE24439-PA 19..436 14..416 865 41.3 Plus
Dyak\GE14285-PA 412 GE14285-PA 31..408 43..416 797 41.4 Plus
Dyak\GE24440-PA 411 GE24440-PA 19..393 31..413 551 34.7 Plus
Dyak\GE14541-PA 463 GE14541-PA 54..449 35..428 489 29.7 Plus

GH10609.hyp Sequence

Translation from 333 to 1631

> GH10609.hyp
MVMMPLRILLIAFSLTLAQSYGVGVNGPRPVRTVETLTQWGQLEFGFPTA
QDRENAQAAGNLVPENGTPIDVQPQYMANGQIRLFTTIPRFVTGIPYTLA
TVSATQGRNGPLLQPYPNYSWHNANGEDCDRITSAFRVAITECNQMWVID
SGVIGTTQLCPPQLLQFALATDRLLHRFRFPNDTYIPSGSLFITPNVLVQ
DPPPRGTCSRTMIYVADVSYHGLVVYDHQAQTSWRAENRFMYPDPDYGKH
TIAGESFYLMDGMFALNNDKRNLYFHPLASASEYSVPLSALNRQQNWANG
PEALPEEFRLLGRRRSECAASAIDGRNNVYCVTFNPVKLFVWNVNSPYNS
RNFGNLPAKSDDLQFVSGMKVLRNREGQEELWMLSNRYQKIAAGTLNSKE
VNFRILRRKLDDVQGGVFFSNDEDLTNRLVFS*

GH10609.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d-PA 432 CG9889-PA 1..432 1..432 2298 100 Plus
yellow-e2-PB 435 CG17044-PB 1..431 1..416 871 40.3 Plus
yellow-d2-PA 412 CG9891-PA 31..408 43..416 769 41.4 Plus
yellow-e3-PA 409 CG17045-PA 19..391 31..413 555 35.8 Plus
yellow-h-PA 463 CG1629-PA 53..434 34..413 485 29.4 Plus