Clone GH10640 Report

Search the DGRC for GH10640

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:40
Vector:pOT2
Associated Gene/TranscriptCG16979-RA
Protein status:GH10640.pep: gold
Preliminary Size:3087
Sequenced Size:2069

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16979 2001-01-01 Release 2 assignment
CG16979 2002-10-12 Blastp of sequenced clone
CG16979 2003-01-01 Sim4 clustering to Release 3
CG16979 2008-04-29 Release 5.5 accounting
CG16979 2008-08-15 Release 5.9 accounting
CG16979 2008-12-18 5.12 accounting

Clone Sequence Records

GH10640.complete Sequence

2069 bp (2069 high quality bases) assembled on 2002-10-12

GenBank Submission: BT001409

> GH10640.complete
AGACACTCAGTTATCGATAAAAAATTGCCAGCTGAGCAACATTTACTCGG
GTGGGTGGCCGTGTTACTTTATTTTATTTTCATACATTTATCAGAAATAT
GCTACCCAAACTAAAAATATCCGCATTCCTGTTGAAGCGCCTGGAGCGAA
CAAAGCAGCAGTGCAGTGGATGCTTGTTTGGAGTTTTCTATGGAGAAGGT
ACCTTACTCCTACTGAGCTTCAACATTGAGTCCAGTTTGGGACAACTGAA
CTACGAGCAGATCCAACACAGATTCCCGGCGGAACTGGATTTATGCGGAC
TGGTCAAGTTTGGTGGTTGCACCGATGGAGAGGCGCACCTTAATGAGGTC
ATCAAATCTGTGGATATCACCGATAATCCCATCCTACTGCAATGCGAATT
GGGCACCTTGGTGGGCTTGCGGGCCTCGTTTTTCGTCCATGGAAAACTGG
AGGAGGTACCCTACGAGGTTATGGAGGCACATCAGCTGTACAACGACTTC
TGCTTCACCCGGCTGCAGTGCGGATTCTTTCTGCAAACGGCCGCCACACC
GGAATCCGTGGCCCGGGAAATGCATGTGCTGCGCAAAAGGGTAGCCGACG
GAAATCTAGTGTTTAACGTTCCGCAGACAAAGATTTTCATTAATAACTAC
GGGCCACTGGACAAACAGTTTAGCGGCGATTCCCAAATTCAGGATCTTAT
AGACGTCATTCCAACTCCAGGACATGAAAAGGAGACTGCCAGTGTCGACA
AAAAGAAGCTTAAAGGTCAGAACACGCCAGTCAAGAGACTGGCTCCGACT
GGCTGCGACTACGAGGTGATCCCCATCGATGTGATGCGCTCGCGCAGTCG
TGATCCCGTGTCCGGAGAGCCACCTCATCCGGCACTCAGCATTGCTGTGA
CCAATGAGGAACAGATCCGAGTCCAGGTACCATTAGAGATCGAAGCCATG
GCCATTCTCTGCCGCAAAACGAAGCTCCAACGGCTATACGACGTACTCAT
CGAGAGCATCTGCAGAGGTCTCAGATTGTTCGAACTGAGCCTGATTGAGC
ATCTCACGGAGTCGGGAAGTGGAAAGCTGCTGGTGCCCGCTAGCTATCAC
TTCTACCCACAAGAGTTTGGTCACTTCGTGAGCTGCGCCTATCTGGAAGG
TCTGAGTGACGATACACCAAGCATGCTAATGAGACGCAAGCGCCTGCATC
GACAGTTTGCTTTGCCCATCAGTCGTCCTTATTTCCGCAGGGCCAACCAG
ATGCTTTTCCTAGGTGAAACGGAGGACGCACCATGGACTCCGCTGCTAAA
TACCCACATCGGATTACGTCCCAGTGGAGTTGTCGACGGCAAAGAGTACT
TAGTAAATGGTAACTACCATTACTATCATTACCTGCAACAGCAGGTGCAG
GACAAGGGATGGGGATGCGCATATCGCTCGCTGCAGACGATCTGCTCCTG
GTTTGTGCTGCAGGGTTATACGAACGCACCGATTCCGACGCATCTGGAGG
TGCAGGAATACCTTCACAAGATCAACGACAAACCTGCTGCATTCGTGGGT
TCTTCTCAGTGGATTGGTTCCACAGAAATCAGCATGTGTCTGCAGGGATT
CCTTAACGTGGACTCAAAAATTCTGCACGTAGCCTCTGGAGCTGAGCTGG
CGACTATTGCCTCCGAGCTGGCGATGCATTTCCAAACGCAAGGTACACCG
GTAATGATTGGTGGCGGTGTTCTGGCCCACACCATTATCGGGGTGGACTA
CTGCGTGCAGACGGGTCAGGTGAAGTTCCTCATCTTGGATCCCCATTATA
CAGGTGCCGATGATTTGGCCACCATTCAAATTAAAGGTTGGTGCGGCTGG
AAGGGCATGGACTTTTGGGCCAAGGGCAGCTACTACAATCTCTGCATGCC
CCAGCGTCCCATTTTGTATTAGGTTGAGCTAGTTTCTTTTCCACTCGCAT
TTAGGTAGGCGAGGATGTTTCGATATGCTTTCTTTAGGTATAACGTATAG
GACATTCTAAATTTTCTATTTTATTGGGTAAATAAAATTATTTTGTATGC
AAAAAAAAAAAAAAAAAAA

GH10640.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16979-RA 2117 CG16979-RA 15..2065 1..2051 10255 100 Plus
CG16979.a 1983 CG16979.a 69..1983 137..2051 9575 100 Plus
CG16979.a 1983 CG16979.a 20..69 1..50 250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15566689..15568603 136..2050 9545 99.9 Plus
chr3L 24539361 chr3L 15566495..15566631 1..137 670 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15576760..15578675 136..2051 9580 100 Plus
3L 28110227 3L 15576566..15576702 1..137 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15569860..15571775 136..2051 9580 100 Plus
3L 28103327 3L 15569666..15569802 1..137 685 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:29:12 has no hits.

GH10640.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:30:26 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15566495..15566631 1..137 99 -> Plus
chr3L 15566691..15568603 138..2050 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:31 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..1824 99..1922 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:46 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..1824 99..1922 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:58:40 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..1824 99..1922 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:02:36 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..1824 99..1922 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:38:29 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..1824 99..1922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:33:43 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..2050 1..2050 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:46 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..2050 1..2050 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:58:40 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..2046 5..2050 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:02:36 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..2050 1..2050 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:38:29 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG16979-RA 1..2046 5..2050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:26 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15576566..15576702 1..137 100 -> Plus
3L 15576762..15578674 138..2050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:26 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15576566..15576702 1..137 100 -> Plus
3L 15576762..15578674 138..2050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:26 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15576566..15576702 1..137 100 -> Plus
3L 15576762..15578674 138..2050 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:58:40 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15569666..15569802 1..137 100 -> Plus
arm_3L 15569862..15571774 138..2050 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:20 Download gff for GH10640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15569862..15571774 138..2050 100   Plus
3L 15569666..15569802 1..137 100 -> Plus

GH10640.hyp Sequence

Translation from 98 to 1921

> GH10640.hyp
MLPKLKISAFLLKRLERTKQQCSGCLFGVFYGEGTLLLLSFNIESSLGQL
NYEQIQHRFPAELDLCGLVKFGGCTDGEAHLNEVIKSVDITDNPILLQCE
LGTLVGLRASFFVHGKLEEVPYEVMEAHQLYNDFCFTRLQCGFFLQTAAT
PESVAREMHVLRKRVADGNLVFNVPQTKIFINNYGPLDKQFSGDSQIQDL
IDVIPTPGHEKETASVDKKKLKGQNTPVKRLAPTGCDYEVIPIDVMRSRS
RDPVSGEPPHPALSIAVTNEEQIRVQVPLEIEAMAILCRKTKLQRLYDVL
IESICRGLRLFELSLIEHLTESGSGKLLVPASYHFYPQEFGHFVSCAYLE
GLSDDTPSMLMRRKRLHRQFALPISRPYFRRANQMLFLGETEDAPWTPLL
NTHIGLRPSGVVDGKEYLVNGNYHYYHYLQQQVQDKGWGCAYRSLQTICS
WFVLQGYTNAPIPTHLEVQEYLHKINDKPAAFVGSSQWIGSTEISMCLQG
FLNVDSKILHVASGAELATIASELAMHFQTQGTPVMIGGGVLAHTIIGVD
YCVQTGQVKFLILDPHYTGADDLATIQIKGWCGWKGMDFWAKGSYYNLCM
PQRPILY*

GH10640.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16979-PA 607 CG16979-PA 1..607 1..607 3225 100 Plus
CG30157-PB 234 CG30157-PB 28..234 398..604 264 33.5 Plus
CG30157-PA 234 CG30157-PA 28..234 398..604 264 33.5 Plus

GH10640.pep Sequence

Translation from 98 to 1921

> GH10640.pep
MLPKLKISAFLLKRLERTKQQCSGCLFGVFYGEGTLLLLSFNIESSLGQL
NYEQIQHRFPAELDLCGLVKFGGCTDGEAHLNEVIKSVDITDNPILLQCE
LGTLVGLRASFFVHGKLEEVPYEVMEAHQLYNDFCFTRLQCGFFLQTAAT
PESVAREMHVLRKRVADGNLVFNVPQTKIFINNYGPLDKQFSGDSQIQDL
IDVIPTPGHEKETASVDKKKLKGQNTPVKRLAPTGCDYEVIPIDVMRSRS
RDPVSGEPPHPALSIAVTNEEQIRVQVPLEIEAMAILCRKTKLQRLYDVL
IESICRGLRLFELSLIEHLTESGSGKLLVPASYHFYPQEFGHFVSCAYLE
GLSDDTPSMLMRRKRLHRQFALPISRPYFRRANQMLFLGETEDAPWTPLL
NTHIGLRPSGVVDGKEYLVNGNYHYYHYLQQQVQDKGWGCAYRSLQTICS
WFVLQGYTNAPIPTHLEVQEYLHKINDKPAAFVGSSQWIGSTEISMCLQG
FLNVDSKILHVASGAELATIASELAMHFQTQGTPVMIGGGVLAHTIIGVD
YCVQTGQVKFLILDPHYTGADDLATIQIKGWCGWKGMDFWAKGSYYNLCM
PQRPILY*

GH10640.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24081-PA 608 GF24081-PA 1..608 1..607 2871 86.5 Plus
Dana\GF11754-PA 242 GF11754-PA 27..242 398..604 214 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15911-PA 608 GG15911-PA 1..608 1..607 3101 94.4 Plus
Dere\GG10782-PA 233 GG10782-PA 27..233 398..604 227 31.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14744-PA 614 GH14744-PA 1..614 1..607 2546 76.6 Plus
Dgri\GH19856-PA 238 GH19856-PA 14..234 383..600 228 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16979-PA 607 CG16979-PA 1..607 1..607 3225 100 Plus
CG30157-PB 234 CG30157-PB 28..234 398..604 264 33.5 Plus
CG30157-PA 234 CG30157-PA 28..234 398..604 264 33.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13122-PA 612 GI13122-PA 1..612 1..607 2559 77.7 Plus
Dmoj\GI19805-PA 234 GI19805-PA 26..230 399..600 243 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19992-PA 164 GL19992-PA 2..162 340..514 627 68.9 Plus
Dper\GL10959-PA 229 GL10959-PA 26..225 401..600 244 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14252-PA 608 GA14252-PA 1..608 1..607 2636 80.6 Plus
Dpse\GA15684-PA 229 GA15684-PA 26..225 401..600 240 31.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25541-PA 607 GM25541-PA 1..607 1..607 3208 97.9 Plus
Dsec\GM20832-PA 234 GM20832-PA 28..234 398..604 243 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14556-PA 607 GD14556-PA 1..607 1..607 3204 98 Plus
Dsim\GD10285-PA 234 GD10285-PA 28..234 398..604 251 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13869-PA 612 GJ13869-PA 1..612 1..607 2529 76.7 Plus
Dvir\GJ18466-PA 237 GJ18466-PA 31..233 399..600 254 30.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17420-PA 609 GK17420-PA 1..609 1..607 2609 78.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23132-PA 608 GE23132-PA 1..608 1..607 3082 94.1 Plus
Dyak\GE24313-PA 233 GE24313-PA 28..233 398..604 255 32.2 Plus