Clone GH10642 Report

Search the DGRC for GH10642

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:42
Vector:pOT2
Associated Gene/Transcripthebe-RB
Protein status:GH10642.pep: gold
Preliminary Size:2200
Sequenced Size:1815

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1623 2001-01-01 Release 2 assignment
CG1623 2001-07-04 Blastp of sequenced clone
CG1623 2003-01-01 Sim4 clustering to Release 3
CG1623 2008-04-29 Release 5.5 accounting
CG1623 2008-08-15 Release 5.9 accounting
CG1623 2008-12-18 5.12 accounting

Clone Sequence Records

GH10642.complete Sequence

1815 bp (1815 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051431

> GH10642.complete
TTTTACGGTAACGCAGCGGACAGTTAGCCTCCAATTATAGAGCGAACGAC
GGAAACGGAAAGTAAAAGCCCCGATCACGACCAGATTCAAAGGCAGACAG
ACATGGCCGAGACAATCAACAACAAGCCGAGCATACAGATCCGCAGCGGA
CTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCGGCCACCAAGCTGCT
GATCAGCCACGGCAAGCCCAACTTCACCATCGCCAAGTCGCCGAAGATCG
ACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGCCCAGCGCCAACAAC
AACTACAACGCCTACAAGAGCGCCAACAGCAGCGTGGCCAACAGCCAGAA
GTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAAGCCATCGAATGCCG
CGGCCACTTGGGCAACCAATGGAAGCACCAATGGCAATGGCACCGCGGAG
TCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGACCCAAGGTGGCGGA
CTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGTGCCGGAGTTCATCA
GGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGGAGAACGTGCTGGAC
TTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTTATGATCTCGCCGGA
CTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGCCAGTCCGGCCATTG
TGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGAAGGTGGAGGAGGAG
GAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTAACCACCTCTGCCCT
GATCACTAAACCCGAACCAGAGGACCCTGTAAGCAATGGACACAGTGAGG
AGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGGCCAAGGCCATTGAG
CAAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCGGAGGTGGAAGCCAC
CCCTGAGCCAGTTCCAGAACCTACTCCAGAGCCAGTGGCAGCCGAACGAA
AGGCGGAGGCCGTGGTAGAGGAGCCCACTCAAGCTCCCGCAGCCGTGGAA
GCCAAGGTGGAGGTGGTGGAGCCAGCTGCTCCCGTGCAAAATGGCCAGAA
GGAGGAGGAGAAGGCTGTTCCTGCCACCAATGGCCTTAAGGAAGAGGAGG
CTGCTCCTGCCACCAATGGTCATAAGGAGGAGGCGGATGCCATTACCATT
TCGCACACCAACGGACAGAGTAGCGATGGACCCAGCATACCCACTCCGGA
TCCCAGTGGCGCCCTGGGAGTGAACTACGAACCCAAGACCGTGGTCAGCT
TCTCGCAGGAATTGGGCAGCGGGGAGAACAAGTATCCGGATACCGTGAAG
GTGGTCAGCGAGGTGCCCGCCGAATCGAATGGCGAGCTCAAGGAGCTGAC
CAAGCTGAAGTTCGACATCCAGAGCGATGATCAGAACGAGGTCCAGGTGA
CGCCCGTACTGCGGGCGGAATAGAAGATCGGCGGATCAAGATGAGAAGTA
GTGCAATTTGTTTGTTAAACAAGAAACCATCAACTATATTGTGTTGTATT
TTGTGTTAGCTGCTAAGTTGATTACGAGAAATGTTGCCAAATTTAATTTT
ATGCTTCGCGCATCAGTCAGTATCGAGAATGGAGTCGGAGTCGGAGTTGG
AGCTGGAGCTGGAGAGCCTAATCCCCCATAGAGCCACCCATGGAGGCCCG
GTCCCCAAAGCGTCATTTCGGGACTAGCTAGACCAAACTACGTGTATTGC
AATAGACACCATTTGCTTTATTTAAATAAATTATTAATTAATATTGAAAA
AAAAAAAAAAAAAAA

GH10642.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1623.c 2422 CG1623.c 78..1876 1..1799 8995 100 Plus
CG1623-RF 1877 CG1623-RF 78..1876 1..1799 8995 100 Plus
CG1623-RB 1907 CG1623-RB 148..1906 41..1799 8795 100 Plus
CG1623-RB 1907 CG1623-RB 78..117 1..40 200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5715585..5717343 1796..38 8705 99.7 Minus
chr2R 21145070 chr2R 5720985..5721024 40..1 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9828101..9829862 1799..38 8810 100 Minus
2R 25286936 2R 9833509..9833548 40..1 200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9829300..9831061 1799..38 8810 100 Minus
2R 25260384 2R 9834708..9834747 40..1 200 100 Minus
Blast to na_te.dros performed 2019-03-15 12:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6912 202..367 154 58 Plus

GH10642.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:44 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5715617..5717340 41..1764 97 <- Minus
chr2R 5720985..5721024 1..40 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:32 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RE 1..1371 103..1473 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:02 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RE 1..1371 103..1473 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:38:42 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 1..1371 103..1473 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:22 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RE 1..1371 103..1473 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:53:41 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 1..1371 103..1473 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:48 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RF 16..1811 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:02 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RF 16..1811 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:38:42 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RF 25..1820 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:22 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RF 16..1811 1..1796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:41 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RF 25..1820 1..1796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:44 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9828104..9829859 41..1796 100 <- Minus
2R 9833509..9833548 1..40 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:44 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9828104..9829859 41..1796 100 <- Minus
2R 9833509..9833548 1..40 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:44 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9828104..9829859 41..1796 100 <- Minus
2R 9833509..9833548 1..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:38:42 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5715609..5717364 41..1796 100 <- Minus
arm_2R 5721014..5721053 1..40 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:15 Download gff for GH10642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9829303..9831058 41..1796 100 <- Minus
2R 9834708..9834747 1..40 100   Minus

GH10642.pep Sequence

Translation from 102 to 1472

> GH10642.pep
MAETINNKPSIQIRSGLPSPLPDKSPSPATKLLISHGKPNFTIAKSPKID
ENGNGNPLSAQPSANNNYNAYKSANSSVANSQKFIVGTKFNGVFKPSNAA
ATWATNGSTNGNGTAESENEVAKVVLRRPKVADSPPPAEGEDENVPEFIR
RQRLIQERLAKENVLDFESRRSGYFTHVMISPDSPNRTSFVETMASPAIV
PALEIPAPVAEKVEEEEKVEVQPQVAAVTTSALITKPEPEDPVSNGHSEE
PKNSDVGPEEVAKAIEQVNQAVAGEDEAEVEATPEPVPEPTPEPVAAERK
AEAVVEEPTQAPAAVEAKVEVVEPAAPVQNGQKEEEKAVPATNGLKEEEA
APATNGHKEEADAITISHTNGQSSDGPSIPTPDPSGALGVNYEPKTVVSF
SQELGSGENKYPDTVKVVSEVPAESNGELKELTKLKFDIQSDDQNEVQVT
PVLRAE*

GH10642.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11476-PA 467 GF11476-PA 1..467 1..456 1422 68.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25259-PA 451 GG25259-PA 1..451 1..456 1895 86.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22845-PA 473 GH22845-PA 1..200 1..206 650 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-PF 456 CG1623-PF 1..456 1..456 2320 100 Plus
hebe-PE 456 CG1623-PE 1..456 1..456 2320 100 Plus
hebe-PD 456 CG1623-PD 1..456 1..456 2320 100 Plus
hebe-PB 456 CG1623-PB 1..456 1..456 2320 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21223-PA 456 GI21223-PA 1..456 1..456 1199 60.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17394-PA 487 GL17394-PA 1..487 1..456 1233 62.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14053-PA 489 GA14053-PA 1..489 1..456 1211 62.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20577-PA 456 GM20577-PA 1..456 1..456 2224 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10050-PA 1100 GD10050-PA 1..117 1..117 593 91.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20827-PA 456 GJ20827-PA 1..456 1..456 1105 60.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15612-PA 460 GK15612-PA 1..457 1..455 1214 64.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22039-PA 465 GE22039-PA 1..465 1..456 1846 87.7 Plus

GH10642.hyp Sequence

Translation from 102 to 1472

> GH10642.hyp
MAETINNKPSIQIRSGLPSPLPDKSPSPATKLLISHGKPNFTIAKSPKID
ENGNGNPLSAQPSANNNYNAYKSANSSVANSQKFIVGTKFNGVFKPSNAA
ATWATNGSTNGNGTAESENEVAKVVLRRPKVADSPPPAEGEDENVPEFIR
RQRLIQERLAKENVLDFESRRSGYFTHVMISPDSPNRTSFVETMASPAIV
PALEIPAPVAEKVEEEEKVEVQPQVAAVTTSALITKPEPEDPVSNGHSEE
PKNSDVGPEEVAKAIEQVNQAVAGEDEAEVEATPEPVPEPTPEPVAAERK
AEAVVEEPTQAPAAVEAKVEVVEPAAPVQNGQKEEEKAVPATNGLKEEEA
APATNGHKEEADAITISHTNGQSSDGPSIPTPDPSGALGVNYEPKTVVSF
SQELGSGENKYPDTVKVVSEVPAESNGELKELTKLKFDIQSDDQNEVQVT
PVLRAE*

GH10642.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-PF 456 CG1623-PF 1..456 1..456 2320 100 Plus
hebe-PE 456 CG1623-PE 1..456 1..456 2320 100 Plus
hebe-PD 456 CG1623-PD 1..456 1..456 2320 100 Plus
hebe-PB 456 CG1623-PB 1..456 1..456 2320 100 Plus