Clone GH10677 Report

Search the DGRC for GH10677

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:77
Vector:pOT2
Associated Gene/TranscriptCG3257-RA
Protein status:GH10677.pep: gold
Sequenced Size:2836

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3257 2002-11-11 Blastp of sequenced clone
CG3257 2003-01-01 Sim4 clustering to Release 3
CG3257 2008-04-29 Release 5.5 accounting
CG3257 2008-08-15 Release 5.9 accounting
CG3257 2008-12-18 5.12 accounting

Clone Sequence Records

GH10677.complete Sequence

2836 bp (2836 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001410

> GH10677.complete
ATTGCCTGATTCCGAGCAGCAAAGAAGTCGGGAATAGCCAGCATAACTTC
ATAAATCCCCATCCGATCCGGCTGTAAGTCCGCCGCAGGTACCTTCTTTT
GGACACCCAGTCCGCCGCAACACCCATGCCCGTTCGAATAGCAAAGGTAT
CGCAGTAGAAAGTTAACCACCACGAGCCAGCCGGCAGCAGGAGGAGCAGG
TGGACCCGACGCCATGGCGCCCTTCAAGATCAAGTTCCGGATGGGCAGCT
CGCGCAGCACCTCGCAGGAGCACGACCCCGACCCGCAGGTGAACGAGGCG
CTCCTGGGCGCCCAGAGCCAGCAGCAGAACGGGCAGCCCCTCCAGGAGGC
GGTGGAGGCCAGCAGCAGCTCCAGCCTCGACCTCGCGGACTCCAGCAGTC
TCGGCCAGCTGAGCAGCGAGCGCAAGCTGCTCCTGCCGCCCACCACCAGT
AGCAGCACCATGCGATTGGGATATCTTAACCAGAACCGCACTCCGTGCAT
CAACGAATCGTTGGCGGATACGGATGCAGACACAGTGCCCACCACCCCAC
CGCCTTCCTACGAGCATGTTCTAGAGGAGAACACTCGGTTGTCCCAACAC
CAGCGACAGTTGTCCCTGGACAGCGCCACTCCGAACCAGAACAGCCGGCG
CAGCTCGGCGAACAGCTCACGGCACAGTGCCGCCCAGCTGAGTGCCGCCT
TGGAGCAGCTGGCCGGGAATGGAGGCGCCGGGGAGTACTGCAACGACCCG
GACTGCAGGCAGAACTTGAACAACAACGGAGCCACCAGCCACAACGGCAA
CCACATCCAGAACGCGAACAACAACAACGACGGCGAGCAGATCTTCGAGG
GCGTCACGGAACTGGAGCTGCGAAGCGACAACGAGGAGCAGCTTAGCATC
AACGAGTTCCTGCTGGAGACAGAGATGGCGGCCTCACCGTCCCGCCGTCT
GGAGGATCGATACGCGGGTGGCGCAGGAGCGGACGAGGATCAGGGCGGCC
AGTGCCAGGACGATCAGTGCGCGCAGTGCAGCGAGGAGCGGGCCAGCGGA
GAGGACAGGGATGCGGCCAGCACCAGCAGTCAGGCGGCGGCATCGTCCGG
CGGTGGCAACAACTTTTACGATCCGCTCCTGAATCGGGGCAGCTACGCAA
ACTACAGTGAAGGTGGCTCTGCGAGTTCGGGACCTGGTTCGGCCAACGGC
CAAATGTGCCAGGAGGCCTGCTGCAGCGGATCCGCATCCGGATCGACTGC
ATCCAGGAGCGGGCGGAGTGGAAGGCGGCAGAACCAGCAGGGTCAGCCGC
CCAACTGCCACACCAGCCTGCTCACGCCGGAGATGATGAGCAACAAGACG
AGCAAGGAGATCTACAAGGACCTGGCCAAGCAGTGGGGCATCACCTGCAA
GATGTCCGAGAGCTGTCGGTGCATGGAGTGTCAGAGTCACTACTTCGACT
GCGACTACGATGATAACGAGCACCAGAAGACGGACGGAGGATTGGGCGCT
GGCACGCCCATGTTTATCAGCGAGGTGATGCACGGATCCGGGTGCAACAT
TTTGTAGGGGACGACATCCGGACGCGGAATCCCCAAGGATTTGCTGAACA
ACTACAATTATTTATCCGTATTGTACATGTTATGATGAGGGAGATATCGC
CTCCTCACGTACTTAGCACTGAGTGTTTGCACATTATTTTAAGGTAATGC
TGCACGGACATATGTTACATAGAATCGGGGAATCGGGAGTATCACGTATG
GAATTGGCCAATTGGCCAGTCGCTTTAGGGGCTCTAAAAGTAGGGGAAAC
GGAGAGGACTACTGTTCGGCGGTAGGAGTATATTTTTGGTGTTAGCCGTA
GGACTTGGGGGAATCGAATCGGAATGGATAGGTCATGTTACCCACCTAGC
AGATGAACATCTAAATATCCTTGAGTGTGTTCTTCTTCGGTCAATAGATT
TCGAAATTTATATATATCCCACACTTGGCCAGCTTGTCATCCCGACTTCT
TCATAGGTACTCCCCCTAGCTGCTTTGCCCCCCAATATTTATATGTATGT
ATTTTTCTAAGTGTAGCGAGGAGGAGCTGAAGCTTGAGGCGGACTAGGAT
GAGCGGCATTCCAGTGCACTTTCCGATCAGAACTCGACGCGTTTCAAAAA
CAGTTTGGAGGAGTCTCTGGTAGGCGAGAGTTCCCGTAAACCCGTAAACC
CAAAAACCCGGAAAGGCCCGCTTTAAGGACACTACTAGTCAAAGTTATCC
ACATCAGCAAACCGTAGAATAAGCTAGACGGCACTTTTGTGCCATTTTAC
ACCCAAATCGATGGTGTTTTTTTTTGGGGAAAACTTAAAACCAAGTTAGC
TCCATCGAAATGGCGATACGAACCTAGTTACTCGAACAAACGAATATGCA
AACTTAGTCTGAAGGTCAATTGGTCCTCATTTAGAGTCGTTGAATGTTCA
TTACTTGCTTTCCGTGTACGTTGACGACATTTACCGAAGATGGATCTGGT
TTCACTGGACAAATCCACTCCGATTAGCACTCGAAAATCGAAAGATAGTG
AAGCAAAACCGACTAAGTCTGTTAGCTGTTAGATGGAAGTAGGAAATTAC
AAGTAAAACGCGTAGGAAAAGCGAATCGATACCAAGTACTTTTTCCAAGT
AGCTAAGTAGCTGAGTAAGAGAGGAGCCCGAACTCGCATCAGCATAGAAA
TAATTCGAAAGGGATCGTAGGAAGTGTAAGGATTGTATTTCGGGCTCTGG
GAGGTTTTCAAAGTCGGACTCCTGTGCTTGAAAAACATATATAAATGTAC
GAATATACTAAACACCTCAAAAAAAAAAAAAAAAAA

GH10677.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-RA 2944 CG3257-RA 105..2923 1..2819 14095 100 Plus
CG3257.a 2799 CG3257.a 45..2778 86..2819 13670 100 Plus
CG3257-RB 3682 CG3257-RB 1311..3661 469..2819 11755 100 Plus
CG3257-RB 3682 CG3257-RB 492..855 107..470 1820 100 Plus
CG3257-RB 3682 CG3257-RB 97..206 1..110 550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20007898..20009250 1465..2818 6600 99.3 Plus
chr2R 21145070 chr2R 20006878..20007464 578..1164 2800 98.5 Plus
chr2R 21145070 chr2R 20005880..20006243 107..470 1775 99.2 Plus
chr2R 21145070 chr2R 20007519..20007822 1161..1464 1475 99 Plus
chr2R 21145070 chr2R 20006699..20006809 469..579 540 99.1 Plus
chr2R 21145070 chr2R 20002873..20002962 1..90 450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24121910..24123264 1465..2819 6775 100 Plus
2R 25286936 2R 24120890..24121476 578..1164 2935 100 Plus
2R 25286936 2R 24119892..24120255 107..470 1820 100 Plus
2R 25286936 2R 24121531..24121834 1161..1464 1520 100 Plus
2R 25286936 2R 24120711..24120821 469..579 555 100 Plus
2R 25286936 2R 24116885..24116974 1..90 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24123109..24124463 1465..2819 6775 100 Plus
2R 25260384 2R 24122089..24122675 578..1164 2935 100 Plus
2R 25260384 2R 24121091..24121454 107..470 1820 100 Plus
2R 25260384 2R 24122730..24123033 1161..1464 1520 100 Plus
2R 25260384 2R 24121910..24122020 469..579 555 100 Plus
2R 25260384 2R 24118084..24118173 1..90 450 100 Plus
Blast to na_te.dros performed 2019-03-16 23:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2443 753..842 132 66.7 Plus

GH10677.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:42:23 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20006700..20006809 470..579 99 -> Plus
chr2R 20002873..20002960 1..88 100 -> Plus
chr2R 20005573..20005594 89..110 100 -> Plus
chr2R 20005884..20006242 111..469 99 -> Plus
chr2R 20006880..20007462 580..1162 98 -> Plus
chr2R 20007521..20007822 1163..1464 99 -> Plus
chr2R 20007898..20009250 1465..2818 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:33:38 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 1..1344 214..1557 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:06:36 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 1..1344 214..1557 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:20 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 1..1344 214..1557 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:56:25 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 1..1344 214..1557 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:24 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 1..1344 214..1557 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:26:17 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 97..2914 1..2818 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:06:36 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 97..2914 1..2818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:20 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 94..2911 1..2818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:56:25 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 97..2914 1..2818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:24 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 94..2911 1..2818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:23 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24116885..24116972 1..88 100 -> Plus
2R 24119585..24119606 89..110 100 -> Plus
2R 24119896..24120254 111..469 100 -> Plus
2R 24120712..24120821 470..579 100 -> Plus
2R 24120892..24121474 580..1162 100 -> Plus
2R 24121533..24121834 1163..1464 100 -> Plus
2R 24121910..24123263 1465..2818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:23 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24116885..24116972 1..88 100 -> Plus
2R 24119585..24119606 89..110 100 -> Plus
2R 24119896..24120254 111..469 100 -> Plus
2R 24120712..24120821 470..579 100 -> Plus
2R 24120892..24121474 580..1162 100 -> Plus
2R 24121533..24121834 1163..1464 100 -> Plus
2R 24121910..24123263 1465..2818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:23 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24116885..24116972 1..88 100 -> Plus
2R 24119585..24119606 89..110 100 -> Plus
2R 24119896..24120254 111..469 100 -> Plus
2R 24120712..24120821 470..579 100 -> Plus
2R 24120892..24121474 580..1162 100 -> Plus
2R 24121533..24121834 1163..1464 100 -> Plus
2R 24121910..24123263 1465..2818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:20 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20004408..20004495 1..88 100 -> Plus
arm_2R 20007108..20007129 89..110 100 -> Plus
arm_2R 20007419..20007777 111..469 100 -> Plus
arm_2R 20008235..20008344 470..579 100 -> Plus
arm_2R 20008415..20008997 580..1162 100 -> Plus
arm_2R 20009056..20009357 1163..1464 100 -> Plus
arm_2R 20009433..20010786 1465..2818 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:55 Download gff for GH10677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24121113..24121471 111..469 100 -> Plus
2R 24121929..24122038 470..579 100 -> Plus
2R 24122109..24122691 580..1162 100 -> Plus
2R 24122750..24123051 1163..1464 100 -> Plus
2R 24123127..24124480 1465..2818 100   Plus
2R 24118102..24118189 1..88 100 -> Plus
2R 24120802..24120823 89..110 100 -> Plus

GH10677.pep Sequence

Translation from 213 to 1556

> GH10677.pep
MAPFKIKFRMGSSRSTSQEHDPDPQVNEALLGAQSQQQNGQPLQEAVEAS
SSSSLDLADSSSLGQLSSERKLLLPPTTSSSTMRLGYLNQNRTPCINESL
ADTDADTVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRRSSAN
SSRHSAAQLSAALEQLAGNGGAGEYCNDPDCRQNLNNNGATSHNGNHIQN
ANNNNDGEQIFEGVTELELRSDNEEQLSINEFLLETEMAASPSRRLEDRY
AGGAGADEDQGGQCQDDQCAQCSEERASGEDRDAASTSSQAAASSGGGNN
FYDPLLNRGSYANYSEGGSASSGPGSANGQMCQEACCSGSASGSTASRSG
RSGRRQNQQGQPPNCHTSLLTPEMMSNKTSKEIYKDLAKQWGITCKMSES
CRCMECQSHYFDCDYDDNEHQKTDGGLGAGTPMFISEVMHGSGCNIL*

GH10677.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11374-PA 452 GF11374-PA 1..452 1..447 1394 73.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22944-PA 444 GG22944-PA 1..444 1..447 2257 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19973-PA 491 GH19973-PA 1..491 1..447 1067 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-PA 447 CG3257-PA 1..447 1..447 2352 100 Plus
CG13594-PB 478 CG13594-PB 98..374 143..422 194 25.4 Plus
CG13594-PA 478 CG13594-PA 98..374 143..422 194 25.4 Plus
Mur89F-PC 2158 CG4090-PC 311..636 12..364 169 21.8 Plus
Mur89F-PB 2159 CG4090-PB 311..636 12..364 169 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20260-PA 504 GI20260-PA 1..504 1..447 966 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11670-PA 471 GL11670-PA 1..471 1..447 1292 69.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16996-PA 467 GA16996-PA 1..467 1..447 1291 70.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18309-PA 447 GM18309-PA 1..447 1..447 2333 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15465-PA 447 GD15465-PA 1..447 1..447 2330 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20213-PA 490 GJ20213-PA 1..490 1..447 1073 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23034-PA 492 GK23034-PA 1..492 1..447 1229 62.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14381-PA 445 GE14381-PA 1..445 1..447 2265 96.9 Plus

GH10677.hyp Sequence

Translation from 213 to 1556

> GH10677.hyp
MAPFKIKFRMGSSRSTSQEHDPDPQVNEALLGAQSQQQNGQPLQEAVEAS
SSSSLDLADSSSLGQLSSERKLLLPPTTSSSTMRLGYLNQNRTPCINESL
ADTDADTVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRRSSAN
SSRHSAAQLSAALEQLAGNGGAGEYCNDPDCRQNLNNNGATSHNGNHIQN
ANNNNDGEQIFEGVTELELRSDNEEQLSINEFLLETEMAASPSRRLEDRY
AGGAGADEDQGGQCQDDQCAQCSEERASGEDRDAASTSSQAAASSGGGNN
FYDPLLNRGSYANYSEGGSASSGPGSANGQMCQEACCSGSASGSTASRSG
RSGRRQNQQGQPPNCHTSLLTPEMMSNKTSKEIYKDLAKQWGITCKMSES
CRCMECQSHYFDCDYDDNEHQKTDGGLGAGTPMFISEVMHGSGCNIL*

GH10677.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-PA 447 CG3257-PA 1..447 1..447 2352 100 Plus
CG13594-PB 478 CG13594-PB 98..374 143..422 194 25.4 Plus
CG13594-PA 478 CG13594-PA 98..374 143..422 194 25.4 Plus
Mur89F-PC 2158 CG4090-PC 311..636 12..364 169 21.8 Plus
Mur89F-PB 2159 CG4090-PB 311..636 12..364 169 21.8 Plus