Clone GH10714 Report

Search the DGRC for GH10714

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:107
Well:14
Vector:pOT2
Associated Gene/TranscriptCG3842-RA
Protein status:GH10714.pep: gold
Preliminary Size:1556
Sequenced Size:1767

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3842 2002-01-01 Sim4 clustering to Release 2
CG3842 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

GH10714.complete Sequence

1767 bp assembled on 2009-03-10

GenBank Submission: BT072840.1

> GH10714.complete
CACGTCTTTAAAAACGTCTTTTTAAAAAAAAATAATAAATACTTATACCA
CATCATCGCTTGAAAAATTCGACTAAAGCGGAAGAGAACACTGACGGGGG
AAACCAGAGATTGTGTATCGAATCCATCGCTTAGCCAGCTATGTCGGAGG
CTGCCACGCCCCCAGGATCAGTGCCAGGAACAGTATTCCCACCTGGCTTC
GATCCCACTGCCGAATCGGTGGAGAAGACTCTCTGCTTCCGGGGTTTCTG
GGCCTGGGCCGTGCTGATATTCCTGATTGTTCTGGGCATATTGCTCTTCA
TGTGGCTGCTGCGCAAGTGCATCCAAGGACCGGCCTACCGGAAGGCCAAT
CGCATCGATGGCAAGGTGGTCATCGTCACCGGCTGCAACACGGGCATTGG
CAAGGAGACGGTCCTCGAGTTGGCCAAGCGGGGTGCCCGCGTCTACATGG
CCTGTCGGGATCCCGGTCGGTGTGAGGCCGCACGACTGGATATCATGGAT
CGCAGTCGCAACCAGCAGCTCTTCAATCGCACCCTGGATCTGGGCTCCCT
GCAGTCGGTGAGAAATTTCGTGGAGCGCTTCAAGGCGGAGGAATCCCGGC
TGGATATACTGATCAATAATGCCGGCGTTATGGCCTGTCCCAGGACCCTC
ACAGCCGATGGCTTTGAGCAGCAGTTCGGTGTCAATCATCTGGGACACTT
TTTGCTCACGAATCTGCTGCTGGATCGACTGAAGCACAGCTCGCCCAGTC
GCATTGTGGTGGTCAGTTCGGCGGCACATCTCTTTGGGCGAATCAACCGC
GAGGATCTGATGAGCGAGAAGAACTACAGCAAGTTCTTTGGGGCGTACAG
TCAGTCCAAGCTGGCCAACATCCTGTTTACCCTCAAGCTGAGCACCATCC
TTAAGGACACCGGCGTAACGGTGAACTGTTGTCATCCGGGTGTGGTCCGC
ACCGAGATCAACCGCCACTTTTCCGGTCCCGGCTGGATGAAGACCGCCCT
GCAGAAGGGCTCGCTGTACTTCTTTAAGACACCCAAGGCTGGCGCCCAGA
CCCAGCTGAGATTGGCGCTGGATCCGCAGTTGGAGGGCTCCACTGGTGGC
TATTACTCGGACTGCATGCGCTGGCCATTGTTTCCGTGGGTCCGGAATAT
GCAGACCGCCGACTGGTTGTGGCGAGAGAGCGAGAAGCTGCTGGGTCTGC
CACCGCTGGAGCCACCTCCACCTGTCCAGAGCCCCACCCAGAATGGCAAT
GGCACTCAAAACGGCAATGGTAGTTCCAGTGCCAGTGCCAGTGCCAGTAG
TAACAATCCCGCTTCACGGGAAATGCAATCCGTGGAAACGGTCGTGGTCA
ATCGTTCGTAGTTGTGGTCAGAGTCCTTCATTGGAGTGCAGACCTTGCTC
TTAATTTAATTCCCTGTAATATGGCGTGCTTGAGTACCCTTGGAAATACC
CAGTGCGGAATGAGGCCGATTCGGGTCTAATTTATAGAGATATATAGTAA
TATATTTATGTTTGATTTTCACATGAGATTATTGAAAGAATTCGGTTCTT
GATATTGTATAATCCACGTTCTATATTAATTAACTATGTTTAAAATTGTT
GATTTCCCAGGGTATTTGAGTCTTCGGTCAATCGAAGTTAGCTTTTGCAT
ACTCTCTTGTTTTTTTTTTTGTCGCTCTCGTTCTGTACATAATTTTAAGG
AAAAGAAAACCCATTAAAATAAAAGTTAAACCTGACATGCAAAAAAAAAA
AAAAAAAAAAAAAAAAA

GH10714.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3842-RA 1744 CG3842-RA 5..1744 1..1740 8700 100 Plus
CG3842.b 2077 CG3842.b 354..2030 66..1742 8385 100 Plus
CG3842-RB 2050 CG3842-RB 327..2003 66..1742 8385 100 Plus
CG3842.b 2077 CG3842.b 5..69 1..65 325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6234261..6235935 66..1740 8375 100 Plus
chrX 22417052 chrX 6231724..6231788 1..65 325 100 Plus
chr2R 21145070 chr2R 3551386..3551487 360..461 255 83.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6342063..6343739 66..1742 8385 100 Plus
X 23542271 X 6339527..6339591 1..65 325 100 Plus
2R 25286936 2R 7664079..7664180 360..461 255 83.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6350161..6351837 66..1742 8385 100 Plus
X 23527363 X 6347625..6347689 1..65 325 100 Plus
2R 25260384 2R 7665278..7665379 360..461 255 83.3 Plus
2R 25260384 2R 7667704..7667829 609..734 165 75.3 Plus
2R 25260384 2R 7663429..7663511 378..460 160 79.5 Plus
2R 25260384 2R 7658663..7658748 366..451 145 77.9 Plus
2R 25260384 2R 7667394..7667442 363..411 140 85.7 Plus
Blast to na_te.dros performed on 2019-03-17 00:14:40 has no hits.

GH10714.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:15:27 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6234261..6235935 66..1740 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:52:29 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RB 1..1221 141..1361 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:40:07 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RB 1..1221 141..1361 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:33:53 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RB 1..1221 141..1361 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:16:00 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RB 1..1221 141..1361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-10 17:38:15 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RA 1..1366 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:40:07 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RA 1..1366 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:53 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RA 32..1765 1..1734 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:00 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
CG3842-RA 32..1765 1..1734 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:27 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
X 6339527..6339591 1..65 100 -> Plus
X 6342063..6343737 66..1740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:27 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
X 6339527..6339591 1..65 100 -> Plus
X 6342063..6343737 66..1740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:27 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
X 6339527..6339591 1..65 100 -> Plus
X 6342063..6343737 66..1740 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:53 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6233560..6233624 1..65 100 -> Plus
arm_X 6236096..6237770 66..1740 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:14:21 Download gff for GH10714.complete
Subject Subject Range Query Range Percent Splice Strand
X 6350161..6351835 66..1740 100   Plus
X 6347625..6347689 1..65 100 -> Plus

GH10714.pep Sequence

Translation from 140 to 1360

> GH10714.pep
MSEAATPPGSVPGTVFPPGFDPTAESVEKTLCFRGFWAWAVLIFLIVLGI
LLFMWLLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGAR
VYMACRDPGRCEAARLDIMDRSRNQQLFNRTLDLGSLQSVRNFVERFKAE
ESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHS
SPSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKL
STILKDTGVTVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLYFFKTPKA
GAQTQLRLALDPQLEGSTGGYYSDCMRWPLFPWVRNMQTADWLWRESEKL
LGLPPLEPPPPVQSPTQNGNGTQNGNGSSSASASASSNNPASREMQSVET
VVVNRS*

GH10714.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20918-PA 391 GF20918-PA 2..391 5..406 1618 79.9 Plus
Dana\GF13190-PA 328 GF13190-PA 17..323 48..353 829 56.2 Plus
Dana\GF13188-PA 331 GF13188-PA 28..321 57..349 776 55.3 Plus
Dana\GF13193-PA 327 GF13193-PA 23..327 54..357 770 54.2 Plus
Dana\GF13192-PA 293 GF13192-PA 15..291 74..353 759 58.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19587-PA 405 GG19587-PA 1..405 1..406 1893 90.9 Plus
Dere\GG23294-PA 329 GG23294-PA 23..323 54..353 772 54.9 Plus
Dere\GG23293-PA 327 GG23293-PA 20..325 45..353 771 54.3 Plus
Dere\GG23291-PA 331 GG23291-PA 26..321 55..349 740 54.9 Plus
Dere\GG23292-PA 296 GG23292-PA 1..290 61..349 735 53.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24058-PA 386 GH24058-PA 19..368 28..381 1446 78.2 Plus
Dgri\GH21882-PA 325 GH21882-PA 23..319 54..349 757 56 Plus
Dgri\GH21880-PA 325 GH21880-PA 23..319 54..349 754 55.6 Plus
Dgri\GH21876-PA 334 GH21876-PA 27..321 56..349 746 56.1 Plus
Dgri\GH21883-PA 573 GH21883-PA 265..572 50..356 729 52.8 Plus
Dgri\GH21883-PA 573 GH21883-PA 46..264 58..277 597 58.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3842-PD 406 CG3842-PD 1..406 1..406 2135 100 Plus
CG3842-PC 406 CG3842-PC 1..406 1..406 2135 100 Plus
CG3842-PB 406 CG3842-PB 1..406 1..406 2135 100 Plus
CG3842-PA 406 CG3842-PA 1..406 1..406 2135 100 Plus
CG2064-PA 330 CG2064-PA 23..327 54..357 802 55.2 Plus
CG2070-PB 325 CG2070-PB 23..323 54..353 786 55 Plus
CG2070-PA 325 CG2070-PA 23..323 54..353 786 55 Plus
CG2065-PB 300 CG2065-PB 1..294 61..353 772 55.6 Plus
CG2065-PA 300 CG2065-PA 1..294 61..353 772 55.6 Plus
CG30491-PB 331 CG30491-PB 26..321 55..349 760 54.9 Plus
CG30491-PA 331 CG30491-PA 26..321 55..349 760 54.9 Plus
CG30495-PA 327 CG30495-PA 20..321 47..349 705 51.5 Plus
CG30495-PB 331 CG30495-PB 20..325 47..349 694 50.5 Plus
CG7675-PD 336 CG7675-PD 49..334 71..358 480 39.7 Plus
CG7675-PB 336 CG7675-PB 49..334 71..358 480 39.7 Plus
CG7675-PE 287 CG7675-PE 1..285 72..358 478 39.8 Plus
CG7675-PC 287 CG7675-PC 1..285 72..358 478 39.8 Plus
CG7675-PA 287 CG7675-PA 1..285 72..358 478 39.8 Plus
CG11200-PC 355 CG11200-PC 68..345 75..351 463 40.8 Plus
CG11200-PA 355 CG11200-PA 68..345 75..351 463 40.8 Plus
CG11200-PB 355 CG11200-PB 68..345 75..351 463 40.8 Plus
CG31235-PB 406 CG31235-PB 14..323 36..325 432 38.4 Plus
CG31235-PA 406 CG31235-PA 14..323 36..325 432 38.4 Plus
Wwox-PB 409 CG7221-PB 119..400 72..351 357 35.4 Plus
Wwox-PA 409 CG7221-PA 119..400 72..351 357 35.4 Plus
CG7601-PA 326 CG7601-PA 15..244 39..274 196 27.6 Plus
CG7322-PC 242 CG7322-PC 7..184 74..273 169 35.1 Plus
CG7322-PB 242 CG7322-PB 7..184 74..273 169 35.1 Plus
CG7322-PA 242 CG7322-PA 7..184 74..273 169 35.1 Plus
CG3699-PA 251 CG3699-PA 3..189 72..276 161 29.2 Plus
CG12171-PA 257 CG12171-PA 7..194 75..275 154 29.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15186-PA 397 GI15186-PA 16..394 21..405 1465 76.4 Plus
Dmoj\GI20381-PA 417 GI20381-PA 118..410 59..350 758 57.1 Plus
Dmoj\GI24262-PA 336 GI24262-PA 49..334 71..358 523 40.7 Plus
Dmoj\GI18778-PA 354 GI18778-PA 60..344 66..353 471 39.5 Plus
Dmoj\GI24267-PA 373 GI24267-PA 14..322 36..325 401 37.3 Plus
Dmoj\GI20381-PA 417 GI20381-PA 27..115 56..144 246 52.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26852-PA 356 GL26852-PA 1..356 1..406 1393 69 Plus
Dper\GL11532-PA 327 GL11532-PA 23..323 54..353 796 57.6 Plus
Dper\GL20020-PA 332 GL20020-PA 28..329 57..357 747 55.4 Plus
Dper\GL20021-PA 296 GL20021-PA 1..294 61..353 683 52.2 Plus
Dper\GL23193-PA 336 GL23193-PA 49..334 71..358 460 39.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17725-PA 394 GA17725-PA 1..394 1..406 1661 78.1 Plus
Dpse\GA15218-PA 327 GA15218-PA 23..323 54..353 798 57.6 Plus
Dpse\GA15878-PA 332 GA15878-PA 28..329 57..357 746 55.1 Plus
Dpse\GA15882-PB 324 GA15882-PB 26..322 58..353 684 52 Plus
Dpse\GA10835-PB 355 GA10835-PB 63..347 66..353 440 39.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12483-PA 403 GM12483-PA 1..403 1..406 1916 93.6 Plus
Dsec\GM20972-PA 330 GM20972-PA 23..327 54..357 777 55 Plus
Dsec\GM20970-PA 325 GM20970-PA 23..323 54..353 759 54.6 Plus
Dsec\GM20971-PA 300 GM20971-PA 1..294 61..353 756 55.3 Plus
Dsec\GM20968-PA 331 GM20968-PA 26..321 55..349 736 54.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10500-PA 329 GD10500-PA 19..323 50..353 773 55.2 Plus
Dsim\GD10499-PA 325 GD10499-PA 23..323 54..353 767 55 Plus
Dsim\GD10497-PA 331 GD10497-PA 26..321 55..349 736 54.5 Plus
Dsim\GD10498-PA 327 GD10498-PA 20..321 47..349 660 51.5 Plus
Dsim\GD20174-PA 336 GD20174-PA 49..334 71..358 507 39.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17067-PA 390 GJ17067-PA 1..388 1..406 1470 72.2 Plus
Dvir\GJ17066-PA 358 GJ17066-PA 11..344 22..355 1225 70.1 Plus
Dvir\GJ22106-PA 327 GJ22106-PA 21..327 52..357 781 56.2 Plus
Dvir\GJ22105-PA 333 GJ22105-PA 27..329 56..357 745 55.6 Plus
Dvir\GJ22107-PA 327 GJ22107-PA 23..324 54..354 706 53.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19885-PA 404 GK19885-PA 1..404 1..406 1583 74.7 Plus
Dwil\GK18888-PA 278 GK18888-PA 6..276 74..355 801 60 Plus
Dwil\GK18001-PA 325 GK18001-PA 13..319 42..349 783 56.1 Plus
Dwil\GK14727-PA 336 GK14727-PA 56..334 74..357 767 57.4 Plus
Dwil\GK14728-PA 292 GK14728-PA 7..291 63..353 743 57 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16748-PA 407 GE16748-PA 1..407 1..406 1842 90.4 Plus
Dyak\GE19140-PA 329 GE19140-PA 19..323 50..353 772 55.2 Plus
Dyak\GE19139-PA 326 GE19139-PA 23..323 54..353 768 55 Plus
Dyak\GE19137-PA 331 GE19137-PA 26..321 55..349 735 54.5 Plus
Dyak\GE19141-PA 314 GE19141-PA 23..306 54..357 715 52.6 Plus

GH10714.hyp Sequence

Translation from 140 to 1360

> GH10714.hyp
MSEAATPPGSVPGTVFPPGFDPTAESVEKTLCFRGFWAWAVLIFLIVLGI
LLFMWLLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGAR
VYMACRDPGRCEAARLDIMDRSRNQQLFNRTLDLGSLQSVRNFVERFKAE
ESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHS
SPSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKL
STILKDTGVTVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLYFFKTPKA
GAQTQLRLALDPQLEGSTGGYYSDCMRWPLFPWVRNMQTADWLWRESEKL
LGLPPLEPPPPVQSPTQNGNGTQNGNGSSSASASASSNNPASREMQSVET
VVVNRS*

GH10714.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3842-PD 406 CG3842-PD 1..406 1..406 2135 100 Plus
CG3842-PC 406 CG3842-PC 1..406 1..406 2135 100 Plus
CG3842-PB 406 CG3842-PB 1..406 1..406 2135 100 Plus
CG3842-PA 406 CG3842-PA 1..406 1..406 2135 100 Plus
CG2064-PA 330 CG2064-PA 23..327 54..357 802 55.2 Plus