Clone GH10780 Report

Search the DGRC for GH10780

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:107
Well:80
Vector:pOT2
Associated Gene/TranscriptCG3544-RA
Protein status:GH10780.pep: gold
Preliminary Size:1465
Sequenced Size:1820

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3544 2001-01-01 Release 2 assignment
CG3544 2001-10-10 Blastp of sequenced clone
CG3544 2003-01-01 Sim4 clustering to Release 3
CG3544 2008-04-29 Release 5.5 accounting
CG3544 2008-08-15 Release 5.9 accounting
CG3544 2008-12-18 5.12 accounting

Clone Sequence Records

GH10780.complete Sequence

1820 bp (1820 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060675

> GH10780.complete
TAGAAGTTTTATAAAAAAAAATTTCGTTCCTTCAAAATTTTGGTTGCAGC
TCCACCGATGGAATATGTGCCACCGCATCAAGCAGGACTACAGTGGCAAC
AGCTACCTGGGCCTCCACTTGGGCACCCAACTCTTCCGCGCCCTGATCCT
CGACTCCAAATTGAACGTTACCTATGTGGCGCAGATCCGCTATGACGTTG
ATCTCCCAGAGTTCAAGACAACGAATGGAATACTATCAGATGGCGGTCCT
GGCGAGTTCCTGGCCAATCCGGTAATGTGGGTAAAGGCACTGGACATGCT
GATGGACTGTTTAGTGAAACAGGGAGCGGATATGCACACGGTGGTCTCTA
TTGCCGGAGCTGCTCAGCAGCACGGTTGCGTCTTCTGGTCGGAGTTGGGC
TTGAGGCGTCTATGCAATTTGAACGTTAACCTGCGGCTCCACGAGCAGAT
CACGGAGAGCGCCTTCGAATTGACCAGAACGCCTACTTGGCGGGATAGCT
CGACGGACGTGCAGGTCCGTGAAATGGAGCACACCGTCGGGGGTCCCGCT
GAACTGTCGAAAATAACGGGCTCCAGAGCGTACACCAGATTCACGGGTCC
CCAAATACGGAAAGTGTATACCCAGTGCCCGGAGCAGTACGAGAGAACTT
CCAGGATTTCGCTGATCAGCAGCTTTTTGGCCTCTCTCCTTATCGGAGGC
ATTGCCTCCATAGACTACAGCGATGGCTCGGGGATGAACCTGCTCGACAT
CCGGAAAAAGAAGTGGTCTGCAGCGTGCCTAGACGCCTGTGCTCCTGACC
TTGCCAGGCGTTTGATGAAGCCCATTCCCTCGTCCCGGCTGCAAGGACGC
ATCGGGGACTACTACGTGAAACGCTGGAACTTCAGGCCGGACTGCATGGT
GGTCGCTTCCACCGGGAGCAAAGCCTCGGAACTGGCAGGGCTACTGGTAG
AGAATGACTTTCTCATGCTCAGTCTGGATACAAGTGATGTGGTAGTGATG
CCTCTAAAGAAAGCTCCGCGGCTGGAGGACGGCCACGTGATGTGCCATCC
GACAAGAAGGGACGAATACATGGGCCTCCTATGCTTCCAAAACGGAGGAT
TGACGCGAAAAGCCATCTGTGAGGATGTCGCCGGCGGCAGTTGGAGGCAC
TTCTACGAAATGCTAGACGCCACGCCATCGGGCAACAATGGCAATGTAGC
TGTGCACTTCCGGGACCGGGAGATTATACCCACTGCCAAGGGCACTCTGC
GCTGGGATGCGCACATAAGCCCGATGTCGGCGGAGTGCATACGTGGCCTA
CACCGCTTCTCCACACCGGAGATTGAGGTTCGGGCTCTAATCGAGGGTCA
GATCATGCACCACTGGTCCATTGCCCACGAGATGGGCTTCCACCACACAC
CGAACACAAAGATAATTGTGGTGGGTGAGGACTCCAGGTGTCAAAGTGTC
CTGCAGATCGTGGCGGACATATTCAATGCTCCTGTTTACCAGCGAACCGG
TGTCGAGGTCAGCCTTTTAGGATGCGCCTTTCGTGCCAGGTACGCCTTCT
ACGAACACCGAGAGTCCGCCTGCAATTGCCATTCCTGCATGATGCCCACG
GGCCGTAGGACGAGACTCAGCTTCGACGAGTTTTTCAGGGACGTGCCTTC
CGGCTTGAAACTGGCTGCGGAACCAACACCTGGCTGCGATAAGATCTACA
AGCCCCTGATCGAACGATGCTCCCAAATTTGCCAGCTGCTGGCCTCCAAA
TCTAGTGTGTACTTTTTCCACCCAAATGTATAAACTTCAATAAGATAGTT
TCAAAAAAAAAAAAAAAAAA

GH10780.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3544-RA 1826 CG3544-RA 22..1823 1..1802 9010 100 Plus
CG3544.a 2392 CG3544.a 60..1814 1..1755 8775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 784225..786026 1..1802 8950 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 784357..786158 1..1802 9010 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 784357..786158 1..1802 9010 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:31:48 has no hits.

GH10780.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:32:26 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 784225..786026 1..1802 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:00 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 1..1719 65..1783 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:56 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 1..1719 65..1783 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:32:18 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 1..1719 65..1783 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:59 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 1..1719 65..1783 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:31 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 1..1719 65..1783 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:31 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 22..1823 1..1802 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:56 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 22..1823 1..1802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:18 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 22..1823 1..1802 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:00 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 22..1823 1..1802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:31 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3544-RA 22..1823 1..1802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:26 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
2L 784357..786158 1..1802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:26 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
2L 784357..786158 1..1802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:26 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
2L 784357..786158 1..1802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:18 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 784357..786158 1..1802 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:09 Download gff for GH10780.complete
Subject Subject Range Query Range Percent Splice Strand
2L 784357..786158 1..1802 100   Plus

GH10780.hyp Sequence

Translation from 1 to 1782

> GH10780.hyp
RSFIKKNFVPSKFWLQLHRWNMCHRIKQDYSGNSYLGLHLGTQLFRALIL
DSKLNVTYVAQIRYDVDLPEFKTTNGILSDGGPGEFLANPVMWVKALDML
MDCLVKQGADMHTVVSIAGAAQQHGCVFWSELGLRRLCNLNVNLRLHEQI
TESAFELTRTPTWRDSSTDVQVREMEHTVGGPAELSKITGSRAYTRFTGP
QIRKVYTQCPEQYERTSRISLISSFLASLLIGGIASIDYSDGSGMNLLDI
RKKKWSAACLDACAPDLARRLMKPIPSSRLQGRIGDYYVKRWNFRPDCMV
VASTGSKASELAGLLVENDFLMLSLDTSDVVVMPLKKAPRLEDGHVMCHP
TRRDEYMGLLCFQNGGLTRKAICEDVAGGSWRHFYEMLDATPSGNNGNVA
VHFRDREIIPTAKGTLRWDAHISPMSAECIRGLHRFSTPEIEVRALIEGQ
IMHHWSIAHEMGFHHTPNTKIIVVGEDSRCQSVLQIVADIFNAPVYQRTG
VEVSLLGCAFRARYAFYEHRESACNCHSCMMPTGRRTRLSFDEFFRDVPS
GLKLAAEPTPGCDKIYKPLIERCSQICQLLASKSSVYFFHPNV*

GH10780.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3544-PB 572 CG3544-PB 1..572 22..593 3039 100 Plus
CG3544-PA 572 CG3544-PA 1..572 22..593 3039 100 Plus
CG3534-PA 552 CG3534-PA 10..552 34..585 1335 45.7 Plus

GH10780.pep Sequence

Translation from 64 to 1782

> GH10780.pep
MCHRIKQDYSGNSYLGLHLGTQLFRALILDSKLNVTYVAQIRYDVDLPEF
KTTNGILSDGGPGEFLANPVMWVKALDMLMDCLVKQGADMHTVVSIAGAA
QQHGCVFWSELGLRRLCNLNVNLRLHEQITESAFELTRTPTWRDSSTDVQ
VREMEHTVGGPAELSKITGSRAYTRFTGPQIRKVYTQCPEQYERTSRISL
ISSFLASLLIGGIASIDYSDGSGMNLLDIRKKKWSAACLDACAPDLARRL
MKPIPSSRLQGRIGDYYVKRWNFRPDCMVVASTGSKASELAGLLVENDFL
MLSLDTSDVVVMPLKKAPRLEDGHVMCHPTRRDEYMGLLCFQNGGLTRKA
ICEDVAGGSWRHFYEMLDATPSGNNGNVAVHFRDREIIPTAKGTLRWDAH
ISPMSAECIRGLHRFSTPEIEVRALIEGQIMHHWSIAHEMGFHHTPNTKI
IVVGEDSRCQSVLQIVADIFNAPVYQRTGVEVSLLGCAFRARYAFYEHRE
SACNCHSCMMPTGRRTRLSFDEFFRDVPSGLKLAAEPTPGCDKIYKPLIE
RCSQICQLLASKSSVYFFHPNV*

GH10780.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15035-PA 569 GF15035-PA 1..563 1..565 2027 67.1 Plus
Dana\GF17074-PA 549 GF17074-PA 9..543 13..565 1349 46.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24744-PA 571 GG24744-PA 1..571 1..571 2913 93 Plus
Dere\GG21873-PA 552 GG21873-PA 10..552 13..564 1398 46.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11241-PA 568 GH11241-PA 1..563 1..564 1543 50.4 Plus
Dgri\GH19552-PA 550 GH19552-PA 12..550 14..562 1431 50.3 Plus
Dgri\GH25221-PA 458 GH25221-PA 1..455 24..478 1355 54.1 Plus
Dgri\GH23245-PA 479 GH23245-PA 1..315 1..316 880 51.6 Plus
Dgri\GH23245-PA 479 GH23245-PA 337..476 425..564 388 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3544-PB 572 CG3544-PB 1..572 1..572 3039 100 Plus
CG3544-PA 572 CG3544-PA 1..572 1..572 3039 100 Plus
CG3534-PA 552 CG3534-PA 10..552 13..564 1335 45.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21838-PA 580 GI21838-PA 1..565 1..565 1473 51.5 Plus
Dmoj\GI23848-PA 553 GI23848-PA 11..550 13..562 1405 48.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15293-PA 574 GL15293-PA 1..570 1..569 1778 58.2 Plus
Dper\GL24542-PA 550 GL24542-PA 9..547 13..561 1424 48.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17513-PA 574 GA17513-PA 1..570 1..569 1822 59.4 Plus
Dpse\GA17507-PA 550 GA17507-PA 9..547 13..561 1425 48.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16766-PA 572 GM16766-PA 1..572 1..572 3038 97.7 Plus
Dsec\GM15194-PA 552 GM15194-PA 10..552 13..564 1372 45.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23045-PA 572 GD23045-PA 1..572 1..572 3038 97.7 Plus
Dsim\GD19126-PA 405 GD19126-PA 10..394 13..397 1084 50.6 Plus
Dsim\GD15162-PA 184 GD15162-PA 7..184 378..564 307 33.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17792-PA 580 GJ17792-PA 1..564 1..565 1650 54.2 Plus
Dvir\GJ10562-PA 553 GJ10562-PA 5..550 6..562 1396 48.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24427-PA 574 GK24427-PA 1..570 1..569 1717 54 Plus
Dwil\GK14507-PA 554 GK14507-PA 4..550 7..563 1462 49.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17067-PA 572 GE17067-PA 1..570 1..570 2855 90.9 Plus
Dyak\GE24596-PA 552 GE24596-PA 10..552 13..564 1387 46 Plus