Clone GH10833 Report

Search the DGRC for GH10833

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:33
Vector:pOT2
Associated Gene/TranscriptCG5045-RA
Protein status:GH10833.pep: gold
Preliminary Size:1300
Sequenced Size:1005

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5045 2001-01-01 Release 2 assignment
CG5045 2002-06-07 Blastp of sequenced clone
CG5045 2003-01-01 Sim4 clustering to Release 3
CG5045 2008-04-29 Release 5.5 accounting
CG5045 2008-08-15 Release 5.9 accounting
CG5045 2008-12-18 5.12 accounting

Clone Sequence Records

GH10833.complete Sequence

1005 bp (1005 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119497

> GH10833.complete
CCAGTCGGAATTCAGTGTTTCTTTTCATTTGTGTCAGAAATGATTTAAAG
TGTGTATTCTTAGCCTTAAGAACAGCTGTTTTGCATAACATTGCGAATCC
GGTTGATTTGCGTCAAAACAAAACCAGGATCATGCTGAAAACCGCTGTTA
GCCGCTTTTTACAAATTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCT
GTTCGCAACATCAACCTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGG
TGAGCGGGCCTACGACATATTCTCACGTCTGCTGAAGGAGCGTATAATTT
GCCTTATGGGCAACATAACCGACGACATCAGTTCGACTGTGGTGGCTCAA
CTGCTGTTCCTGCAATCGGAGAACGTCAACAAACCGATCCATCTGTACAT
CAATTCGCCCGGCGGTGTTGTTACAGCGGGTTTGGCGATCTACGATACGA
TGCAGTACGTCAAGCCACCCATTGCAACTTGGTGCGTTGGACAGGCCTGC
TCGATGGGATCCCTCCTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTC
CCTACCCAACGCGCGAATAATGATACATCAGCCCTCTGGTGGCGCACAAG
GCCAAGCCACAGACATCCTAATACATGCTGAGGAAATTATCAAAATCAAG
CGCCAGCTGACCAACATCTACGTGAAGCACGCCAAGAATACGTACGAGGA
GATGTCCGGACGCATGGAGCGCGACCACTTCATGACCCCCGAGGAGGCAA
AAGTGCTGGGCATCATTGACCACGTGCTTGAACATCCTCCAGAGACTGTT
TCCGAAACGGGACCCGCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGT
GCCCGAGGAGTGCGAGAAGAAGAGAAGCAAGCAGGCAGCCTAAATTTCCA
CCTTCCTATAGACCAAAATTCAATCATAAGTTCGAAACAATTTGAATAAT
TCAGTTTTCCACAGAATATACACTTTCCAAATACAAAAAAAAAAAAAAAA
AAAAA

GH10833.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RA 1280 CG5045-RA 54..1038 1..985 4925 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10355873..10356299 174..600 2135 100 Plus
chr2L 23010047 chr2L 10356348..10356739 593..984 1915 99.2 Plus
chr2L 23010047 chr2L 10355647..10355822 1..176 880 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 174..600 2135 100 Plus
2L 23513712 2L 10357485..10357877 593..985 1935 99.5 Plus
2L 23513712 2L 10356784..10356959 1..176 880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 174..600 2135 100 Plus
2L 23513712 2L 10357485..10357877 593..985 1935 99.4 Plus
2L 23513712 2L 10356784..10356959 1..176 880 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:20:25 has no hits.

GH10833.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:21:31 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10355647..10355819 1..173 100 -> Plus
chr2L 10355873..10356298 174..599 100 -> Plus
chr2L 10356355..10356739 600..984 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:06 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 132..893 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:27:18 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 132..893 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:56 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 132..893 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:03 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 132..893 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:06:01 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 132..893 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:56:13 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 42..1025 1..984 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:27:18 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 42..1025 1..984 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:56 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..973 12..984 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:03 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 42..1025 1..984 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:06:01 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..973 12..984 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:31 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10356784..10356956 1..173 100 -> Plus
2L 10357010..10357435 174..599 100 -> Plus
2L 10357492..10357876 600..984 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:31 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10356784..10356956 1..173 100 -> Plus
2L 10357010..10357435 174..599 100 -> Plus
2L 10357492..10357876 600..984 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:31 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10356784..10356956 1..173 100 -> Plus
2L 10357010..10357435 174..599 100 -> Plus
2L 10357492..10357876 600..984 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:56 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356784..10356956 1..173 100 -> Plus
arm_2L 10357010..10357435 174..599 100 -> Plus
arm_2L 10357492..10357876 600..984 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:09 Download gff for GH10833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10357010..10357435 174..599 100 -> Plus
2L 10357492..10357876 600..984 100   Plus
2L 10356784..10356956 1..173 100 -> Plus

GH10833.hyp Sequence

Translation from 2 to 892

> GH10833.hyp
SRNSVFLFICVRNDLKCVFLALRTAVLHNIANPVDLRQNKTRIMLKTAVS
RFLQISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIIC
LMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTM
QYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQG
QATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHFMTPEEAK
VLGIIDHVLEHPPETVSETGPASDGGVTSGKAVPEECEKKRSKQAA*

GH10833.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PB 253 CG5045-PB 1..253 44..296 1297 100 Plus
CG5045-PA 253 CG5045-PA 1..253 44..296 1297 100 Plus

GH10833.pep Sequence

Translation from 131 to 892

> GH10833.pep
MLKTAVSRFLQISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRL
LKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAG
LAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQ
PSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHF
MTPEEAKVLGIIDHVLEHPPETVSETGPASDGGVTSGKAVPEECEKKRSK
QAA*

GH10833.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15771-PA 252 GF15771-PA 1..252 1..253 1227 90.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10114-PA 253 GG10114-PA 1..253 1..253 1315 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13604-PA 255 GH13604-PA 1..253 1..253 1132 85.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PB 253 CG5045-PB 1..253 1..253 1297 100 Plus
CG5045-PA 253 CG5045-PA 1..253 1..253 1297 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20379-PA 223 GI20379-PA 1..223 32..253 1093 91.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19149-PA 253 GL19149-PA 1..253 1..253 1185 86.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18618-PA 253 GA18618-PA 1..253 1..253 1186 87 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18225-PA 253 GM18225-PA 1..253 1..253 1340 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23683-PA 253 GD23683-PA 1..253 1..253 1336 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13731-PA 254 GJ13731-PA 1..254 1..253 1151 85.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15263-PA 255 GK15263-PA 1..255 1..253 1170 85.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18928-PA 253 GE18928-PA 1..253 1..253 1329 97.6 Plus