BDGP Sequence Production Resources |
Search the DGRC for GH10864
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 108 |
Well: | 64 |
Vector: | pOT2 |
Associated Gene/Transcript | Tpi-RB |
Protein status: | GH10864.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1211 |
Gene | Date | Evidence |
---|---|---|
CG2171 | 2001-01-01 | Release 2 assignment |
CG2171 | 2004-05-05 | Blastp of sequenced clone |
Tpi | 2008-04-29 | Release 5.5 accounting |
Tpi | 2008-08-15 | Release 5.9 accounting |
Tpi | 2008-12-18 | 5.12 accounting |
1211 bp (1211 high quality bases) assembled on 2004-05-05
GenBank Submission: BT014664
> GH10864.complete TTAATCTCGAATCTGGGAAAAATCTGAGTGGAAAAGTCGACGGCGAGCCT CCAGTCATCGAGTTACCCACTTGAAATTATCAGTTCCAAACACTCTAATA GCAGTCCCCTTGTTTTGTCCCCCGATCCGCAGTTCTACGCCAATTTCAGC ACCGATTGCACCGACAGCAACAGCAACAACATGAGCCGAAAGTTCTGCGT GGGAGGCAACTGGAAGATGAACGGCGACCAGAAGTCCATCGCCGAGATCG CCAAGACCCTGAGCTCGGCCGCCCTCGACCCCAACACGGAGGTGGTCATC GGCTGCCCGGCCATCTACCTGATGTACGCCCGCAACCTGCTGCCCTGCGA GCTGGGTCTGGCCGGCCAGAATGCCTACAAGGTGGCCAAGGGCGCATTCA CCGGCGAGATCTCCCCTGCGATGCTGAAGGACATCGGCGCCGACTGGGTG ATCCTGGGACACTCGGAGCGTCGCGCCATCTTCGGCGAATCGGACGCCCT GATCGCCGAGAAGGCCGAGCACGCCCTGGCCGAGGGCCTCAAGGTCATCG CCTGCATTGGTGAGACCCTGGAGGAGCGCGAGGCCGGCAAGACCAACGAG GTGGTGGCCCGCCAAATGTGCGCCTACGCCCAGAAGATCAAGGACTGGAA GAACGTGGTGGTGGCCTACGAGCCCGTCTGGGCCATTGGCACCGGCCAGA CCGCCACACCCGATCAGGCTCAAGAGGTCCACGCCTTCCTGCGCCAGTGG CTGAGCGACAACATCTCCAAGGAGGTGTCCGCCAGCCTGCGCATCCAGTA CGGTGGATCCGTGACCGCCGCCAACGCCAAGGAGCTGGCCAAGAAGCCCG ACATAGATGGCTTCCTGGTCGGAGGCGCCTCCCTGAAGCCCGAGTTCGTG GACATCATCAACGCCCGGCAGTAAGCAACGCGATCTCAAGCATCAGATCG CTTTCGGCCAGCGAACTGCCCGCGAAGGAGGCACTGGAGGGCAGGACTCC ATACTCCTGCGCGCGAATGCATTACGCACACACCTAGTTGTTGTCACCAC CAAGTGCAGTTCCAAATTCATAGTTACCTTGCGAGAATGCTACTCACATC CTTGTTGTTGAACGTATAGTAGTCCATTGTGTAAATCTTAAATTATTCAG GCAATAATTATGCGCTACTCATTTACTTATATACCAAAAAAAAAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2868 | 147..228 | 140 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2288..2452 | 122..286 | 132 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6839 | 143..264 | 124 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6875 | 147..264 | 118 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2655 | 135..186 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6855 | 141..190 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6897 | 141..181 | 115 | 75.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1112..1152 | 141..181 | 115 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 135..191 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6875 | 135..225 | 113 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6831 | 147..232 | 113 | 61.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2528 | 135..287 | 110 | 56.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25955404..25955871 | 718..1185 | 100 | <- | Minus |
chr3R | 25955933..25956649 | 1..717 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RA | 254..1047 | 131..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RA | 254..1047 | 131..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RA | 254..1047 | 131..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RA | 254..1047 | 131..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RA | 254..1047 | 131..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RC | 50..1234 | 1..1185 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RC | 50..1234 | 1..1185 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RC | 84..1268 | 1..1185 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RC | 50..1234 | 1..1185 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tpi-RC | 84..1268 | 1..1185 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30132981..30133448 | 718..1185 | 100 | <- | Minus |
3R | 30133510..30134226 | 1..717 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30132981..30133448 | 718..1185 | 100 | <- | Minus |
3R | 30133510..30134226 | 1..717 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30132981..30133448 | 718..1185 | 100 | <- | Minus |
3R | 30133510..30134226 | 1..717 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25958703..25959170 | 718..1185 | 100 | <- | Minus |
arm_3R | 25959232..25959948 | 1..717 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29873812..29874279 | 718..1185 | 100 | <- | Minus |
3R | 29874341..29875057 | 1..717 | 100 | Minus |
Translation from 180 to 923
> GH10864.hyp MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAI FGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYA QKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVS ASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ*
Translation from 180 to 923
> GH10864.pep MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAI FGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYA QKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVS ASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16201-PA | 309 | GF16201-PA | 65..309 | 3..247 | 1233 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11962-PA | 348 | GG11962-PA | 102..348 | 1..247 | 1300 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18391-PA | 306 | GH18391-PA | 61..306 | 2..247 | 1144 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tpi-PC | 247 | CG2171-PC | 1..247 | 1..247 | 1268 | 100 | Plus |
Tpi-PB | 247 | CG2171-PB | 1..247 | 1..247 | 1268 | 100 | Plus |
Tpi-PA | 348 | CG2171-PA | 102..348 | 1..247 | 1268 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23383-PA | 307 | GI23383-PA | 63..307 | 3..247 | 1208 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14069-PA | 299 | GL14069-PA | 54..299 | 2..247 | 1234 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Tpi-PA | 299 | GA15281-PA | 54..299 | 2..247 | 1234 | 92.7 | Plus |
Dpse\Tpi-PC | 248 | GA15281-PC | 3..248 | 2..247 | 1228 | 92.7 | Plus |
Dpse\Tpi-PB | 248 | GA15281-PB | 3..248 | 2..247 | 1228 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12179-PA | 348 | GM12179-PA | 102..348 | 1..247 | 1302 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Tpi-PA | 348 | GD17322-PA | 102..348 | 1..247 | 1302 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10377-PA | 307 | GJ10377-PA | 62..307 | 2..247 | 1192 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13151-PA | 308 | GK13151-PA | 64..308 | 3..247 | 1205 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Tpi-PA | 350 | GE23412-PA | 104..350 | 1..247 | 1303 | 99.2 | Plus |