Clone GH10876 Report

Search the DGRC for GH10876

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:76
Vector:pOT2
Associated Gene/TranscriptDNaseII-RA
Protein status:GH10876.pep: gold
Preliminary Size:1300
Sequenced Size:1227

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7780 2001-01-01 Release 2 assignment
CG7780 2003-01-01 Sim4 clustering to Release 3
CG7780 2003-04-01 Blastp of sequenced clone
DNaseII 2008-04-29 Release 5.5 accounting
DNaseII 2008-08-15 Release 5.9 accounting
DNaseII 2008-12-18 5.12 accounting

Clone Sequence Records

GH10876.complete Sequence

1227 bp (1227 high quality bases) assembled on 2003-04-01

GenBank Submission: AY075328

> GH10876.complete
CAACTTGAAGGTTGTACAATGCGATCTCTGTGCTTCGTTTTGCTGTTCGT
TTGGTTTTTCTACCAAAACGAAGCTAAGTCTAAGGTTTCCTGTAAGGATG
AAGCTGGAAACGATGTAGATTGGTGGCACCTTTACAAACTGCCCAAGCAC
TACCAGCACAACGATTTGGGCAAGGACACCAGTGGCTTGAAGTACCTGTA
CGTGACCAGCCAGAACTATGACACCTGGCAGATGTCGGGAAAGTTCATTA
GTGATCCCCTATCGCTGCCTGCCCAGACCCTTAACCCCTTGAACGACGAT
CCCAGCCACACTCTGCTGGCCGCCTACAACGATCAACAGCCGAATGGCAC
GGTTTTCAGCAGCGGTGGTCATGCCAAAGGAGTGGTGGCCAGTGATGGGG
AGACGGCTATTTGGATTGTCCACTCGGTGCCCAAATTTCCAACAATTCCG
GACTACAGCTATCCCACATCCGGCGAGCAGTACGCACAGAGCATGCTCTG
CGTCACACTGAAGGGCGAGGATTTGGAGAAGGTTGGTCAGATTCTGGTGT
ACAATGAACCGCACTTCTACTATCAACGCAACCCGCTGGCCACTCGCTCC
GATGAGCTGTTCCCGAGCCTGGAAAGGGCTCTGCATGGTCAGTGGCGGAC
GGAATCACCGTTCCAGAAGGACTTGGAGGTGCGCAGCTTGGACGGCAAGA
AGTTCCGGCTGTTTGGCAAGAGTGGACGCGCCAATGTGGAGCTGTACGCC
GATGTGGTCGCACCCACTCTGGATGTCAGTCTTTTTGTGGAGGCGTGGCG
CGACGGTGCCGGCAACTTACCGAATAGCTGCGATAAGTCCGATAAGGTTC
TCAATGTGGAATCCATTTCCAATCCGGAGCTATCGGTGGACTTTAAGACC
ACACAAGATCACTCCAAGTGGGCGGTATCTCGTCCCACAGGCATTTTGAT
CTACCATTGGCGAGTTGGCGGCGGAGATTGGATTTGTGTGGGCGACATCA
ACCGGCAAGAAGGTCAGTTGCATCGTGGTGGTGGAACCGTGTGCCACAAG
AGCGCCAGGGTATCCAATCTGTACCGCCAACTGGTCACCAACTACGACAA
GTGCGCCCAACAGGAATAGAATCTGAACTAACTAAGACTATTTGTAAAGT
TGCGTCAACAATTAAATAAACACCATTTTTGCATTACATTTAATGCATAA
GAAAATTGAAAAAAAAAAAAAAAAAAA

GH10876.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
DNaseII-RA 1385 DNaseII-RA 160..1370 1..1211 6055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13844482..13845568 122..1208 5375 99.6 Plus
chr3R 27901430 chr3R 13843802..13843925 1..124 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18020075..18021164 122..1211 5450 100 Plus
3R 32079331 3R 18019395..18019518 1..124 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17760906..17761995 122..1211 5450 100 Plus
3R 31820162 3R 17760226..17760349 1..124 620 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:24:42 has no hits.

GH10876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:25:36 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13843802..13843923 1..122 100 -> Plus
chr3R 13844483..13845568 123..1208 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:14 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 1..1101 19..1119 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:45:37 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 1..1101 19..1119 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:42:21 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 1..1101 19..1119 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:03 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 1..1101 19..1119 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:58:29 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 1..1101 19..1119 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:56:44 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 19..1226 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:45:36 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 19..1226 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:42:21 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 21..1228 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:03 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 19..1226 1..1208 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:58:29 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
DNaseII-RA 21..1228 1..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:36 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18019395..18019516 1..122 100 -> Plus
3R 18020076..18021161 123..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:36 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18019395..18019516 1..122 100 -> Plus
3R 18020076..18021161 123..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:36 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18019395..18019516 1..122 100 -> Plus
3R 18020076..18021161 123..1208 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:42:21 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13845117..13845238 1..122 100 -> Plus
arm_3R 13845798..13846883 123..1208 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:08 Download gff for GH10876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17760907..17761992 123..1208 100   Plus
3R 17760226..17760347 1..122 100 -> Plus

GH10876.hyp Sequence

Translation from 1 to 1118

> GH10876.hyp
QLEGCTMRSLCFVLLFVWFFYQNEAKSKVSCKDEAGNDVDWWHLYKLPKH
YQHNDLGKDTSGLKYLYVTSQNYDTWQMSGKFISDPLSLPAQTLNPLNDD
PSHTLLAAYNDQQPNGTVFSSGGHAKGVVASDGETAIWIVHSVPKFPTIP
DYSYPTSGEQYAQSMLCVTLKGEDLEKVGQILVYNEPHFYYQRNPLATRS
DELFPSLERALHGQWRTESPFQKDLEVRSLDGKKFRLFGKSGRANVELYA
DVVAPTLDVSLFVEAWRDGAGNLPNSCDKSDKVLNVESISNPELSVDFKT
TQDHSKWAVSRPTGILIYHWRVGGGDWICVGDINRQEGQLHRGGGTVCHK
SARVSNLYRQLVTNYDKCAQQE*

GH10876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
DNaseII-PA 366 CG7780-PA 1..366 7..372 1986 100 Plus

GH10876.pep Sequence

Translation from 18 to 1118

> GH10876.pep
MRSLCFVLLFVWFFYQNEAKSKVSCKDEAGNDVDWWHLYKLPKHYQHNDL
GKDTSGLKYLYVTSQNYDTWQMSGKFISDPLSLPAQTLNPLNDDPSHTLL
AAYNDQQPNGTVFSSGGHAKGVVASDGETAIWIVHSVPKFPTIPDYSYPT
SGEQYAQSMLCVTLKGEDLEKVGQILVYNEPHFYYQRNPLATRSDELFPS
LERALHGQWRTESPFQKDLEVRSLDGKKFRLFGKSGRANVELYADVVAPT
LDVSLFVEAWRDGAGNLPNSCDKSDKVLNVESISNPELSVDFKTTQDHSK
WAVSRPTGILIYHWRVGGGDWICVGDINRQEGQLHRGGGTVCHKSARVSN
LYRQLVTNYDKCAQQE*

GH10876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16750-PA 365 GF16750-PA 1..365 1..365 1731 85.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22593-PA 366 GG22593-PA 1..366 1..366 1848 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15034-PA 362 GH15034-PA 1..361 1..362 1315 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
DNaseII-PA 366 CG7780-PA 1..366 1..366 1986 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23709-PA 363 GI23709-PA 1..362 1..362 1357 66.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12583-PA 370 GL12583-PA 1..369 1..364 1612 79.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20583-PA 370 GA20583-PA 1..369 1..364 1612 79.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15271-PA 366 GM15271-PA 1..366 1..366 1921 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19194-PA 471 GD19194-PA 1..232 1..232 1205 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23268-PA 363 GJ23268-PA 1..362 1..362 1364 67.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11236-PA 366 GK11236-PA 1..365 1..362 1352 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25505-PA 366 GE25505-PA 1..366 1..366 1774 91 Plus