Clone GH10882 Report

Search the DGRC for GH10882

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:82
Vector:pOT2
Associated Gene/TranscriptCG17564-RB
Protein status:GH10882.pep: gold
Preliminary Size:1780
Sequenced Size:1243

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17564 2002-01-01 Sim4 clustering to Release 2
CG17564 2008-04-29 Stopped prior to 5.5
CG17564 2008-12-18 5.12 accounting

Clone Sequence Records

GH10882.complete Sequence

1243 bp assembled on 2008-11-19

GenBank Submission: BT053699.1

> GH10882.complete
CACACACAACTACTACTACAAAACGCACAATCCGCGCTGTATCGCGGTAA
CCAAAGCAAAAAAAAAAATATAAAAAACTAACAAAAACGTACACTTGAGC
TTTTACTTTCGGCAAAGAGATCCAAGATGCCCCGCGTGAAGCCCACCAAG
AAGCTCGATGTTCTGGGAAATCTGGACCTGCGGCCGGAGGATGCCGTGGG
GGACTATATCAGCTCTAAGCAGCAGAACAAATTCTTCGTAATTCCACCGA
ACTCGGACTCTGCCGGCGACTCCATCGAACTGATATATGTGAACAATCTC
CGCGAGCACGAAGCCATGCTCAAGCTGCAGGAGGAGATGCTGACCAGTGC
CAAGCGGCAGACCAAGCTGAACTCCGCCCGGGTGAGGAACATGTACAAGA
TCCAGGAGCGGCTGAGGCGGCGCTTCATCGAGGTGAACAGCTTCATCAAG
GACTGCGCGGACAAAAAGAGAGTGGCCGAGAAGACCGCCCAAGCGGAGAC
GCTCAACCATAAGGAGCTCGGCGAGGGCATTGAGAGCTTCAAGGACTCGA
TCGGCGAACTCAAGGCCTTTCGGGAGGCTCTCAAGGCCACCGTGCAGGAG
TTCCAGCCCTACGAGAAGGTGCTCGACGAGGTGGTGAAGGTATCCGACAT
ATTCGTCTCGCCAAAGGACTGCACCGATCGCTGTGATGCGCTGATGCTGG
CTCAAGTGGAGATCAACAAGTTGGAGCATCAAAAGCTCCAGGACATCGAG
AACATGCGGCAGCGTATGGTGCAGATCACAAATGATGCGGCTCTAACTGT
GCTGGGTCTAAAGAACGATCTGGCCAAACTGGAACGATCCTACAACGAGT
CCAGAGTGCAGTGCCTCAGATGGGAGAAGATCCTGGCCAAGACCAAGGAC
GCCATCAACAACAACTACATGGACAAGGAGCGCACAATAGATGCGATTAC
CAACCTTCACCGAATCCTTCTACGGCGAAGAGATGTACATTCGTTTCCCG
CTCGCGGCGACTTGGACAAGGTGTTGGATGCCATCATGGGCGAAGTGGAA
ATATTAACTGGCGTTGTAAAGGAAATCGAATCATCTGATCCCTCGATAAA
GCACGAGGAAGCCAGAGATAAGTCGCTGTGCTAATTGGATATCAAAATTC
AAAGAGTTCATAGGGAAGACTAGGCACACCTCACAGCTATTACAACTATA
AAAGCTTATTAAAAGCGAAACTTTTAAAAAAAAAAAAAAAAAA

GH10882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17564-RB 1315 CG17564-RB 83..1309 1..1229 6090 99.8 Plus
CG17564.a 822 CG17564.a 331..816 744..1229 2430 100 Plus
CG17564.a 822 CG17564.a 1..337 96..432 1685 100 Plus
CG10750-RA 1194 CG10750-RA 530..817 538..825 360 75 Plus
CG10750-RA 1194 CG10750-RA 383..460 391..468 195 83.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19297581..19298035 694..240 2260 99.8 Minus
chr2L 23010047 chr2L 19297235..19297522 982..695 1380 98.6 Minus
chr2L 23010047 chr2L 19298208..19298444 239..1 1130 99.2 Minus
chr2L 23010047 chr2L 19296942..19297181 1225..981 1100 97.6 Minus
chr2L 23010047 chr2L 19299292..19299587 391..686 220 71.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19298988..19299442 694..240 2275 100 Minus
2L 23513712 2L 19298642..19298929 982..695 1440 100 Minus
2L 23513712 2L 19298341..19298589 1229..981 1245 100 Minus
2L 23513712 2L 19299615..19299851 239..1 1130 99.2 Minus
2L 23513712 2L 19300699..19300994 391..686 220 71.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19298988..19299442 694..240 2275 100 Minus
2L 23513712 2L 19298642..19298929 982..695 1440 100 Minus
2L 23513712 2L 19298341..19298589 1229..981 1245 100 Minus
2L 23513712 2L 19299615..19299851 239..1 1140 99.1 Minus
2L 23513712 2L 19300699..19300776 391..468 195 83.3 Plus
2L 23513712 2L 19300846..19300994 538..686 190 75.1 Plus
2L 23513712 2L 19301061..19301188 698..825 175 75.7 Plus
Blast to na_te.dros performed on 2019-03-16 10:01:59 has no hits.

GH10882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:03:06 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19296942..19297179 983..1225 97 <- Minus
chr2L 19297235..19297522 695..982 98 <- Minus
chr2L 19297581..19298035 240..694 99 <- Minus
chr2L 19298208..19298444 1..239 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:16 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:20:25 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:44 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 1..1008 127..1134 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:52:28 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 1..1008 127..1134 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-19 08:52:33 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 1..1223 1..1225 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:20:25 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 1..1223 1..1225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:44 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 83..1305 1..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:52:28 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
CG17564-RB 83..1305 1..1225 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:06 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19298642..19298929 695..982 100 <- Minus
2L 19298345..19298587 983..1225 100 <- Minus
2L 19298988..19299442 240..694 100 <- Minus
2L 19299615..19299851 1..239 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:06 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19298642..19298929 695..982 100 <- Minus
2L 19298345..19298587 983..1225 100 <- Minus
2L 19298988..19299442 240..694 100 <- Minus
2L 19299615..19299851 1..239 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:06 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19298642..19298929 695..982 100 <- Minus
2L 19298345..19298587 983..1225 100 <- Minus
2L 19298988..19299442 240..694 100 <- Minus
2L 19299615..19299851 1..239 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:44 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19298345..19298587 983..1225 100 <- Minus
arm_2L 19298642..19298929 695..982 100 <- Minus
arm_2L 19298988..19299442 240..694 100 <- Minus
arm_2L 19299615..19299851 1..239 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:51:52 Download gff for GH10882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19298345..19298587 983..1225 100 <- Minus
2L 19298642..19298929 695..982 100 <- Minus
2L 19298988..19299442 240..694 100 <- Minus
2L 19299615..19299851 1..239 99   Minus

GH10882.pep Sequence

Translation from 126 to 1133

> GH10882.pep
MPRVKPTKKLDVLGNLDLRPEDAVGDYISSKQQNKFFVIPPNSDSAGDSI
ELIYVNNLREHEAMLKLQEEMLTSAKRQTKLNSARVRNMYKIQERLRRRF
IEVNSFIKDCADKKRVAEKTAQAETLNHKELGEGIESFKDSIGELKAFRE
ALKATVQEFQPYEKVLDEVVKVSDIFVSPKDCTDRCDALMLAQVEINKLE
HQKLQDIENMRQRMVQITNDAALTVLGLKNDLAKLERSYNESRVQCLRWE
KILAKTKDAINNNYMDKERTIDAITNLHRILLRRRDVHSFPARGDLDKVL
DAIMGEVEILTGVVKEIESSDPSIKHEEARDKSLC*

GH10882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15201-PA 332 GF15201-PA 1..326 1..326 1312 74.2 Plus
Dana\GF15202-PA 335 GF15202-PA 1..335 1..335 1243 70.1 Plus
Dana\GF14711-PA 331 GF14711-PA 1..320 1..320 1017 59.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21640-PA 335 GG21640-PA 1..335 1..335 1688 94.9 Plus
Dere\GG21168-PA 331 GG21168-PA 1..320 1..320 1049 61.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13474-PA 333 GH13474-PA 1..289 1..289 1062 67.8 Plus
Dgri\GH13442-PA 337 GH13442-PA 1..336 1..335 1024 59.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17564-PB 335 CG17564-PB 1..335 1..335 1691 100 Plus
CG10750-PA 331 CG10750-PA 1..320 1..320 993 60.9 Plus
CG10750-PB 331 CG10750-PB 1..320 1..320 986 60.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17227-PA 328 GI17227-PA 1..323 1..323 1172 67.8 Plus
Dmoj\GI14005-PA 336 GI14005-PA 1..335 1..335 1038 59.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21116-PA 334 GL21116-PA 1..326 1..326 1277 73.9 Plus
Dper\GL21195-PA 329 GL21195-PA 1..320 1..320 998 58.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14557-PA 334 GA14557-PA 1..334 1..335 1264 71.9 Plus
Dpse\GA10542-PA 329 GA10542-PA 1..325 1..325 999 58.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17018-PA 335 GM17018-PA 1..335 1..335 1749 98.8 Plus
Dsec\GM17333-PA 331 GM17333-PA 1..320 1..320 1042 61.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21768-PA 335 GD21768-PA 1..335 1..335 1755 99.1 Plus
Dsim\GD24193-PA 297 GD24193-PA 1..286 1..320 860 53.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17986-PA 333 GJ17986-PA 1..323 1..323 1112 64.7 Plus
Dvir\GJ18249-PA 336 GJ18249-PA 1..335 1..335 1040 59.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23847-PA 338 GK23847-PA 1..315 1..315 1148 70.2 Plus
Dwil\GK23826-PA 336 GK23826-PA 1..320 1..320 1050 61.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12659-PA 335 GE12659-PA 1..335 1..335 1685 94.3 Plus
Dyak\GE13241-PA 331 GE13241-PA 1..320 1..320 1040 61.3 Plus

GH10882.hyp Sequence

Translation from 126 to 1133

> GH10882.hyp
MPRVKPTKKLDVLGNLDLRPEDAVGDYISSKQQNKFFVIPPNSDSAGDSI
ELIYVNNLREHEAMLKLQEEMLTSAKRQTKLNSARVRNMYKIQERLRRRF
IEVNSFIKDCADKKRVAEKTAQAETLNHKELGEGIESFKDSIGELKAFRE
ALKATVQEFQPYEKVLDEVVKVSDIFVSPKDCTDRCDALMLAQVEINKLE
HQKLQDIENMRQRMVQITNDAALTVLGLKNDLAKLERSYNESRVQCLRWE
KILAKTKDAINNNYMDKERTIDAITNLHRILLRRRDVHSFPARGDLDKVL
DAIMGEVEILTGVVKEIESSDPSIKHEEARDKSLC*

GH10882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17564-PB 335 CG17564-PB 1..335 1..335 1691 100 Plus
CG10750-PA 331 CG10750-PA 1..320 1..320 993 60.9 Plus
CG10750-PB 331 CG10750-PB 1..320 1..320 986 60.6 Plus