BDGP Sequence Production Resources |
Search the DGRC for GH10889
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 108 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | Pat1-RA |
Protein status: | GH10889.pep: gold |
Preliminary Size: | 2867 |
Sequenced Size: | 3222 |
Gene | Date | Evidence |
---|---|---|
CG10695 | 2001-01-01 | Release 2 assignment |
CG10695 | 2001-09-19 | Blastp of sequenced clone |
CG10695 | 2003-01-01 | Sim4 clustering to Release 3 |
Pat1 | 2008-04-29 | Release 5.5 accounting |
Pat1 | 2008-08-15 | Release 5.9 accounting |
Pat1 | 2008-12-18 | 5.12 accounting |
3222 bp (3222 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058334
> GH10889.complete CGATTTTAGCCGACGGGGCAATTGGACAATTGGATGTGTTCCGCTTCCGA GTTGTAGTGTCACGCCTCCTGCGAGTCCCCCGTTTCCCGACTGGTTAGCA TCGTTGCAAAACCAAAAAAAAACAGCACTAGCATCGATATATATACATAT ATTTAAAAAAAAAAAAAAAGGAAAGGCAACATCAAAACAGCGAGATGGCT GGCCAACAGCTCGTGGTCTTGATCCCCAAAATAAATCCCAACTCCCCGAA GACCCTATACGACCTGTCGCTGCAGGCCCTCATCGGGAGTATGAACACCA AGATACCGGCGCTGGACAGGATCAGTCGACTGGCTGAGCTGCCACGCAAC TTGCTCATCGATGTTTACGAAATGATGTCACAGCAGGAGTCCTTGAAGGA CACGCTGCTGGAGGAGCTGGCCCAGCTTGAGGTATTCGCTCGACTCGTTC GCTATCCATTTGCTCGCAGTCAATTGCTGCGCATAATGGCCTCACTAATG GCCAGCCAAAAGATGCTGGCCAAAAGACTCAGCGAGAACTATGTGTCGCG CTATGAGGTGGTGGCCGGTCACGAAGAAGAGGAACTGGAGTCGAGTATGG ATACAGTTGAGGATCGCTCAACGGAGTTCAGTTCACTGTATACCTACGAT TCCGAATCTACAAATGCAGACAGCATCAGTGATTTTAATGACGAATTCAG TGCTGATATCGGAAGCATAGTAGGTCTCCCACACCGGAGAGCAACACAGG AGGAACTCGATGCGATCAATGATTCTGGCCTCGAGGAGCTGTCCGCCGTT GAGCTGCAGGTCATAGATCTGGGCCTGCGCCTCGGATCGTTCCTCTCGGA GGCTGGATGGATGCAGGAGAGCATTACCGTGCTGGCATGCCTTAATGTAA GACTGAAGGATCTGCCGACCCACAAACACTGGTTGCAGTTTCGACTCGAC TGCCTGCAGCGCCTTTTGTATGCCGAATCGGCCCATTGCAACTTCAAGGA GGCAGAGAAAACCTACGCGGAATTGATGGGTCTGAACAAATGGCTCAATA AGAGCGTGCCAAACCAGCTGGTGGCCATAACCTACAGTCAGATTTCGGCC ATGTACTTTGCCCGCAATGAGTACAAGAACAGTCATTTGTGGAGCGGTCT CGCCATGCGATTTTTAAAAGGATATGCGAATCCACGCACCATCATCGATG TTCTGCGCCAGGCGGCGAAGGCCTGTGTCGTTAAGCGGGACTTTGCCCGG GCCAATCTGCTCATCTGCCAGGCGGTGCGACGCGCACGCGAGTACTTTGG CCCAACGCACCAGAAATACGGCGATGCACTGCTGGACTACGGATTTTTCC TACTCAACGTGGACTCGGTGTTCCAGTCTGTAAATATATACAAAGAAGCA CTGGCCGTGCGTCGTGGTATTTTTGGGAATATGAACTTTCACGTGGCCAT TGCCCATGAGGATTTGTCGTATGCCTACTACGTTCACGAGTACAGCACCG GTGACTTTAGCTGTGCCCAGGATCACGTGGACAAGGCTGTGAATATAATG CAGCATCTGGTGCCAAGCAATCATCTAATGTTGGCATCGGCGAAGCGCGT AAAGGCACTCCTGCTGGAGGAGATTGCGCTGGACAAGATGGCTGATGGCA TAGATGAGGAGGATCTGCTGCTTCAATCCGAGGAGCTGCACAATTTCGCC CTGCTTCTCTCGCTGCAAGTGTTTGGCGAGGTGAATGTACAGACGGCGAA GCACTATGGAAATCTGGGGCGGTTATACCAAACGATGAATCGTTTCGAAG AGGCGGAACGAATGCACAAAAAGGCGATCAAAATTAAGTCGGAACTGCTG GGTCACTTTGACTACGAGGTTGGCCTGTCCATTGGGCATTTGGCCTCGCT GTACAATTACCAGATGAAGAAATACCGTGATGCCGAACAGCTTTACATGC GCAGCATTGATATAAGCCTGCGTCTGTTTGGGAACTCATACTCTGGCCTG GAGTACGATTATTTGGGTCTGTGCCACGTCTACGAAACATTGCATAACTT TGAGAAGTATTTGAAGTATGCGCACAAGCTGGAAAACTGGCAGATGTTGC GTGGCCAAAACCTCACACAAAATAAGTCCAGCTATCCCGCCATCGAGGTG GACTATTCTATCGAGGAGGTCAAGGCCAAGTACTTCAGCATGTGCGCCTC GAAAAAAAGCGCACACCCCTCGGTGCACGAGGAGGACACGGTGAACGAAA ACTGAGTAGGGGCTTTGGTGGGAGTGGTTGCCGAATCGGAACCGGAATCG GATATGGTAGCGGACGACGATGAGGAAGTTACAGTTGCACCTGCACTAGC AAACGCAATCGCACCCACATCCCCAGCAACGGATGGCACAAACTGGAGGG CAAACTGCAGCAGGAGCAGCGGCAATGGTGACAGCGGCGTCAACATCTGC AGTTTGTCTTAGATAATAGATTCGAATAAGTTAGCCCACGTTGAAAATGA GGAGGCACATCAAGGATCGACCCGGGTGTTCTTTAAGAATCTCTCAAAGT ATGGTATGATAGCATAGCTTGGTCGAATTGAATATTCAACCACGTTTCGT TCAAGGTTTTTATTTGCCATTTCCATCGAAACAGACCCGTAGTTATAACC GAACTACTATACGTATTACATCGTAACGAGAGTGTGGGTCAGCTCAGCAA ATTTTTCACTGTGTTCCAGTCATCATCGAATACGTCCAGTACCCCTAGTT CCCGAAGTTTTCAAGGATGCCAAGTCCAGTTTTTTCAGTCAGATAGACCT AGGCTAAGATGTAGTAGTATTGTTGGAGCTTCGGTTAACCGCTTAATCGG GAGATCGTTGAGCAAATAGTTTTTTTTTTTTTGTAAGTAATATATATTGT AATATTCCCCGCGTTTTGTTCCATGTACAAATGTTAAAAGTTTTTCTGGA CTTTCGCCTCGAATAATTCAACTTTTGTATTTTTTCGAAAACCACAAAAA AAAGGGCCAGTCGCCGCCAGAGGACAAAGTTTGCTTTCGTTAGAGTAGCA CGTGTATTTGTTTCAGTTTGTAATACCCCCCACTCCCCCTACCCTTTATA AGATTTAAAGTTGTATAGAGTGCAAGAAGTATGCCCATTGTATAGTCTAA GTCCTAATCCAAACGATATAATAAATATATATATATTTCTTTGCGTTCGC ATTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6487826..6488906 | 2124..3203 | 5355 | 99.9 | Plus |
chrX | 22417052 | chrX | 6486853..6487531 | 1288..1966 | 3380 | 99.9 | Plus |
chrX | 22417052 | chrX | 6485649..6486236 | 374..961 | 2910 | 99.7 | Plus |
chrX | 22417052 | chrX | 6483721..6484044 | 56..374 | 1390 | 96.6 | Plus |
chrX | 22417052 | chrX | 6486377..6486602 | 961..1186 | 1130 | 100 | Plus |
chrX | 22417052 | chrX | 6487604..6487761 | 1966..2123 | 790 | 100 | Plus |
chrX | 22417052 | chrX | 6486672..6486774 | 1186..1288 | 485 | 98.1 | Plus |
chrX | 22417052 | chrX | 6483235..6483289 | 1..55 | 260 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 6595536..6596634 | 2124..3222 | 5465 | 99.8 | Plus |
X | 23542271 | X | 6594564..6595242 | 1288..1966 | 3395 | 100 | Plus |
X | 23542271 | X | 6593360..6593947 | 374..961 | 2940 | 100 | Plus |
X | 23542271 | X | 6591446..6591763 | 56..374 | 1545 | 99.7 | Plus |
X | 23542271 | X | 6594088..6594313 | 961..1186 | 1130 | 100 | Plus |
X | 23542271 | X | 6595314..6595471 | 1966..2123 | 790 | 100 | Plus |
X | 23542271 | X | 6594383..6594485 | 1186..1288 | 515 | 100 | Plus |
X | 23542271 | X | 6590951..6591005 | 1..55 | 275 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 6603634..6604732 | 2124..3222 | 5465 | 99.8 | Plus |
X | 23527363 | X | 6602662..6603340 | 1288..1966 | 3395 | 100 | Plus |
X | 23527363 | X | 6601458..6602045 | 374..961 | 2940 | 100 | Plus |
X | 23527363 | X | 6599544..6599861 | 56..374 | 1555 | 99.6 | Plus |
X | 23527363 | X | 6602186..6602411 | 961..1186 | 1130 | 100 | Plus |
X | 23527363 | X | 6603412..6603569 | 1966..2123 | 790 | 100 | Plus |
X | 23527363 | X | 6602481..6602583 | 1186..1288 | 515 | 100 | Plus |
X | 23527363 | X | 6599049..6599103 | 1..55 | 275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6486673..6486774 | 1187..1288 | 98 | -> | Plus |
chrX | 6483235..6483289 | 1..55 | 98 | -> | Plus |
chrX | 6483721..6484044 | 56..374 | 96 | -> | Plus |
chrX | 6485650..6486236 | 375..961 | 99 | -> | Plus |
chrX | 6486378..6486602 | 962..1186 | 100 | -> | Plus |
chrX | 6486854..6487530 | 1289..1965 | 99 | -> | Plus |
chrX | 6487604..6487761 | 1966..2123 | 100 | -> | Plus |
chrX | 6487826..6488906 | 2124..3203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 1..2061 | 195..2255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 1..2061 | 195..2255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 1..2061 | 195..2255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 1..2061 | 195..2255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 1..2061 | 195..2255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 174..3375 | 1..3203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 174..3375 | 1..3203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 176..3377 | 1..3203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 174..3375 | 1..3203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pat1-RA | 176..3377 | 1..3203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6590951..6591005 | 1..55 | 100 | -> | Plus |
X | 6591446..6591763 | 56..374 | 99 | -> | Plus |
X | 6593361..6593947 | 375..961 | 100 | -> | Plus |
X | 6594089..6594313 | 962..1186 | 100 | -> | Plus |
X | 6594384..6594485 | 1187..1288 | 100 | -> | Plus |
X | 6594565..6595241 | 1289..1965 | 100 | -> | Plus |
X | 6595314..6595471 | 1966..2123 | 100 | -> | Plus |
X | 6595536..6596615 | 2124..3203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6590951..6591005 | 1..55 | 100 | -> | Plus |
X | 6591446..6591763 | 56..374 | 99 | -> | Plus |
X | 6593361..6593947 | 375..961 | 100 | -> | Plus |
X | 6594089..6594313 | 962..1186 | 100 | -> | Plus |
X | 6594384..6594485 | 1187..1288 | 100 | -> | Plus |
X | 6594565..6595241 | 1289..1965 | 100 | -> | Plus |
X | 6595314..6595471 | 1966..2123 | 100 | -> | Plus |
X | 6595536..6596615 | 2124..3203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6590951..6591005 | 1..55 | 100 | -> | Plus |
X | 6591446..6591763 | 56..374 | 99 | -> | Plus |
X | 6593361..6593947 | 375..961 | 100 | -> | Plus |
X | 6594089..6594313 | 962..1186 | 100 | -> | Plus |
X | 6594384..6594485 | 1187..1288 | 100 | -> | Plus |
X | 6594565..6595241 | 1289..1965 | 100 | -> | Plus |
X | 6595314..6595471 | 1966..2123 | 100 | -> | Plus |
X | 6595536..6596615 | 2124..3203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6484984..6485038 | 1..55 | 100 | -> | Plus |
arm_X | 6485479..6485796 | 56..374 | 99 | -> | Plus |
arm_X | 6487394..6487980 | 375..961 | 100 | -> | Plus |
arm_X | 6488122..6488346 | 962..1186 | 100 | -> | Plus |
arm_X | 6488417..6488518 | 1187..1288 | 100 | -> | Plus |
arm_X | 6488598..6489274 | 1289..1965 | 100 | -> | Plus |
arm_X | 6489347..6489504 | 1966..2123 | 100 | -> | Plus |
arm_X | 6489569..6490648 | 2124..3203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6599049..6599103 | 1..55 | 100 | -> | Plus |
X | 6603412..6603569 | 1966..2123 | 100 | -> | Plus |
X | 6599544..6599861 | 56..374 | 99 | -> | Plus |
X | 6601459..6602045 | 375..961 | 100 | -> | Plus |
X | 6602187..6602411 | 962..1186 | 100 | -> | Plus |
X | 6602482..6602583 | 1187..1288 | 100 | -> | Plus |
X | 6602663..6603339 | 1289..1965 | 100 | -> | Plus |
X | 6603634..6604713 | 2124..3203 | 100 | Plus |
Translation from 1 to 2254
> GH10889.hyp DFSRRGNWTIGCVPLPSCSVTPPASPPFPDWLASLQNQKKTALASIYIHI FKKKKKERQHQNSEMAGQQLVVLIPKINPNSPKTLYDLSLQALIGSMNTK IPALDRISRLAELPRNLLIDVYEMMSQQESLKDTLLEELAQLEVFARLVR YPFARSQLLRIMASLMASQKMLAKRLSENYVSRYEVVAGHEEEELESSMD TVEDRSTEFSSLYTYDSESTNADSISDFNDEFSADIGSIVGLPHRRATQE ELDAINDSGLEELSAVELQVIDLGLRLGSFLSEAGWMQESITVLACLNVR LKDLPTHKHWLQFRLDCLQRLLYAESAHCNFKEAEKTYAELMGLNKWLNK SVPNQLVAITYSQISAMYFARNEYKNSHLWSGLAMRFLKGYANPRTIIDV LRQAAKACVVKRDFARANLLICQAVRRAREYFGPTHQKYGDALLDYGFFL LNVDSVFQSVNIYKEALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTG DFSCAQDHVDKAVNIMQHLVPSNHLMLASAKRVKALLLEEIALDKMADGI DEEDLLLQSEELHNFALLLSLQVFGEVNVQTAKHYGNLGRLYQTMNRFEE AERMHKKAIKIKSELLGHFDYEVGLSIGHLASLYNYQMKKYRDAEQLYMR SIDISLRLFGNSYSGLEYDYLGLCHVYETLHNFEKYLKYAHKLENWQMLR GQNLTQNKSSYPAIEVDYSIEEVKAKYFSMCASKKSAHPSVHEEDTVNEN *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pat1-PC | 686 | CG10695-PC | 1..686 | 65..750 | 3512 | 100 | Plus |
Pat1-PA | 686 | CG10695-PA | 1..686 | 65..750 | 3512 | 100 | Plus |
Pat1-PB | 685 | CG10695-PB | 1..685 | 65..750 | 3495 | 99.9 | Plus |
Translation from 194 to 2254
> GH10889.pep MAGQQLVVLIPKINPNSPKTLYDLSLQALIGSMNTKIPALDRISRLAELP RNLLIDVYEMMSQQESLKDTLLEELAQLEVFARLVRYPFARSQLLRIMAS LMASQKMLAKRLSENYVSRYEVVAGHEEEELESSMDTVEDRSTEFSSLYT YDSESTNADSISDFNDEFSADIGSIVGLPHRRATQEELDAINDSGLEELS AVELQVIDLGLRLGSFLSEAGWMQESITVLACLNVRLKDLPTHKHWLQFR LDCLQRLLYAESAHCNFKEAEKTYAELMGLNKWLNKSVPNQLVAITYSQI SAMYFARNEYKNSHLWSGLAMRFLKGYANPRTIIDVLRQAAKACVVKRDF ARANLLICQAVRRAREYFGPTHQKYGDALLDYGFFLLNVDSVFQSVNIYK EALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVN IMQHLVPSNHLMLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHN FALLLSLQVFGEVNVQTAKHYGNLGRLYQTMNRFEEAERMHKKAIKIKSE LLGHFDYEVGLSIGHLASLYNYQMKKYRDAEQLYMRSIDISLRLFGNSYS GLEYDYLGLCHVYETLHNFEKYLKYAHKLENWQMLRGQNLTQNKSSYPAI EVDYSIEEVKAKYFSMCASKKSAHPSVHEEDTVNEN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22267-PA | 683 | GF22267-PA | 8..669 | 14..666 | 2571 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19597-PA | 697 | GG19597-PA | 1..697 | 1..686 | 3073 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12689-PA | 695 | GH12689-PA | 16..689 | 14..675 | 2210 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pat1-PC | 686 | CG10695-PC | 1..686 | 1..686 | 3512 | 100 | Plus |
Pat1-PA | 686 | CG10695-PA | 1..686 | 1..686 | 3512 | 100 | Plus |
Pat1-PB | 685 | CG10695-PB | 1..685 | 1..686 | 3495 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16363-PA | 676 | GI16363-PA | 7..672 | 14..675 | 2384 | 69.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14949-PA | 697 | GL14949-PA | 17..682 | 14..668 | 2560 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10502-PA | 698 | GA10502-PA | 17..692 | 14..678 | 2555 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12501-PA | 602 | GM12501-PA | 1..599 | 1..682 | 2729 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16806-PA | 795 | GD16806-PA | 1..590 | 1..588 | 2767 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16732-PA | 705 | GJ16732-PA | 3..700 | 2..675 | 2325 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17367-PA | 701 | GK17367-PA | 1..656 | 1..664 | 2472 | 71.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16757-PA | 697 | GE16757-PA | 1..697 | 1..686 | 3072 | 83.5 | Plus |