Clone GH10889 Report

Search the DGRC for GH10889

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:89
Vector:pOT2
Associated Gene/TranscriptPat1-RA
Protein status:GH10889.pep: gold
Preliminary Size:2867
Sequenced Size:3222

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10695 2001-01-01 Release 2 assignment
CG10695 2001-09-19 Blastp of sequenced clone
CG10695 2003-01-01 Sim4 clustering to Release 3
Pat1 2008-04-29 Release 5.5 accounting
Pat1 2008-08-15 Release 5.9 accounting
Pat1 2008-12-18 5.12 accounting

Clone Sequence Records

GH10889.complete Sequence

3222 bp (3222 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058334

> GH10889.complete
CGATTTTAGCCGACGGGGCAATTGGACAATTGGATGTGTTCCGCTTCCGA
GTTGTAGTGTCACGCCTCCTGCGAGTCCCCCGTTTCCCGACTGGTTAGCA
TCGTTGCAAAACCAAAAAAAAACAGCACTAGCATCGATATATATACATAT
ATTTAAAAAAAAAAAAAAAGGAAAGGCAACATCAAAACAGCGAGATGGCT
GGCCAACAGCTCGTGGTCTTGATCCCCAAAATAAATCCCAACTCCCCGAA
GACCCTATACGACCTGTCGCTGCAGGCCCTCATCGGGAGTATGAACACCA
AGATACCGGCGCTGGACAGGATCAGTCGACTGGCTGAGCTGCCACGCAAC
TTGCTCATCGATGTTTACGAAATGATGTCACAGCAGGAGTCCTTGAAGGA
CACGCTGCTGGAGGAGCTGGCCCAGCTTGAGGTATTCGCTCGACTCGTTC
GCTATCCATTTGCTCGCAGTCAATTGCTGCGCATAATGGCCTCACTAATG
GCCAGCCAAAAGATGCTGGCCAAAAGACTCAGCGAGAACTATGTGTCGCG
CTATGAGGTGGTGGCCGGTCACGAAGAAGAGGAACTGGAGTCGAGTATGG
ATACAGTTGAGGATCGCTCAACGGAGTTCAGTTCACTGTATACCTACGAT
TCCGAATCTACAAATGCAGACAGCATCAGTGATTTTAATGACGAATTCAG
TGCTGATATCGGAAGCATAGTAGGTCTCCCACACCGGAGAGCAACACAGG
AGGAACTCGATGCGATCAATGATTCTGGCCTCGAGGAGCTGTCCGCCGTT
GAGCTGCAGGTCATAGATCTGGGCCTGCGCCTCGGATCGTTCCTCTCGGA
GGCTGGATGGATGCAGGAGAGCATTACCGTGCTGGCATGCCTTAATGTAA
GACTGAAGGATCTGCCGACCCACAAACACTGGTTGCAGTTTCGACTCGAC
TGCCTGCAGCGCCTTTTGTATGCCGAATCGGCCCATTGCAACTTCAAGGA
GGCAGAGAAAACCTACGCGGAATTGATGGGTCTGAACAAATGGCTCAATA
AGAGCGTGCCAAACCAGCTGGTGGCCATAACCTACAGTCAGATTTCGGCC
ATGTACTTTGCCCGCAATGAGTACAAGAACAGTCATTTGTGGAGCGGTCT
CGCCATGCGATTTTTAAAAGGATATGCGAATCCACGCACCATCATCGATG
TTCTGCGCCAGGCGGCGAAGGCCTGTGTCGTTAAGCGGGACTTTGCCCGG
GCCAATCTGCTCATCTGCCAGGCGGTGCGACGCGCACGCGAGTACTTTGG
CCCAACGCACCAGAAATACGGCGATGCACTGCTGGACTACGGATTTTTCC
TACTCAACGTGGACTCGGTGTTCCAGTCTGTAAATATATACAAAGAAGCA
CTGGCCGTGCGTCGTGGTATTTTTGGGAATATGAACTTTCACGTGGCCAT
TGCCCATGAGGATTTGTCGTATGCCTACTACGTTCACGAGTACAGCACCG
GTGACTTTAGCTGTGCCCAGGATCACGTGGACAAGGCTGTGAATATAATG
CAGCATCTGGTGCCAAGCAATCATCTAATGTTGGCATCGGCGAAGCGCGT
AAAGGCACTCCTGCTGGAGGAGATTGCGCTGGACAAGATGGCTGATGGCA
TAGATGAGGAGGATCTGCTGCTTCAATCCGAGGAGCTGCACAATTTCGCC
CTGCTTCTCTCGCTGCAAGTGTTTGGCGAGGTGAATGTACAGACGGCGAA
GCACTATGGAAATCTGGGGCGGTTATACCAAACGATGAATCGTTTCGAAG
AGGCGGAACGAATGCACAAAAAGGCGATCAAAATTAAGTCGGAACTGCTG
GGTCACTTTGACTACGAGGTTGGCCTGTCCATTGGGCATTTGGCCTCGCT
GTACAATTACCAGATGAAGAAATACCGTGATGCCGAACAGCTTTACATGC
GCAGCATTGATATAAGCCTGCGTCTGTTTGGGAACTCATACTCTGGCCTG
GAGTACGATTATTTGGGTCTGTGCCACGTCTACGAAACATTGCATAACTT
TGAGAAGTATTTGAAGTATGCGCACAAGCTGGAAAACTGGCAGATGTTGC
GTGGCCAAAACCTCACACAAAATAAGTCCAGCTATCCCGCCATCGAGGTG
GACTATTCTATCGAGGAGGTCAAGGCCAAGTACTTCAGCATGTGCGCCTC
GAAAAAAAGCGCACACCCCTCGGTGCACGAGGAGGACACGGTGAACGAAA
ACTGAGTAGGGGCTTTGGTGGGAGTGGTTGCCGAATCGGAACCGGAATCG
GATATGGTAGCGGACGACGATGAGGAAGTTACAGTTGCACCTGCACTAGC
AAACGCAATCGCACCCACATCCCCAGCAACGGATGGCACAAACTGGAGGG
CAAACTGCAGCAGGAGCAGCGGCAATGGTGACAGCGGCGTCAACATCTGC
AGTTTGTCTTAGATAATAGATTCGAATAAGTTAGCCCACGTTGAAAATGA
GGAGGCACATCAAGGATCGACCCGGGTGTTCTTTAAGAATCTCTCAAAGT
ATGGTATGATAGCATAGCTTGGTCGAATTGAATATTCAACCACGTTTCGT
TCAAGGTTTTTATTTGCCATTTCCATCGAAACAGACCCGTAGTTATAACC
GAACTACTATACGTATTACATCGTAACGAGAGTGTGGGTCAGCTCAGCAA
ATTTTTCACTGTGTTCCAGTCATCATCGAATACGTCCAGTACCCCTAGTT
CCCGAAGTTTTCAAGGATGCCAAGTCCAGTTTTTTCAGTCAGATAGACCT
AGGCTAAGATGTAGTAGTATTGTTGGAGCTTCGGTTAACCGCTTAATCGG
GAGATCGTTGAGCAAATAGTTTTTTTTTTTTTGTAAGTAATATATATTGT
AATATTCCCCGCGTTTTGTTCCATGTACAAATGTTAAAAGTTTTTCTGGA
CTTTCGCCTCGAATAATTCAACTTTTGTATTTTTTCGAAAACCACAAAAA
AAAGGGCCAGTCGCCGCCAGAGGACAAAGTTTGCTTTCGTTAGAGTAGCA
CGTGTATTTGTTTCAGTTTGTAATACCCCCCACTCCCCCTACCCTTTATA
AGATTTAAAGTTGTATAGAGTGCAAGAAGTATGCCCATTGTATAGTCTAA
GTCCTAATCCAAACGATATAATAAATATATATATATTTCTTTGCGTTCGC
ATTAAAAAAAAAAAAAAAAAAA

GH10889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pat1-RA 3467 Pat1-RA 189..3409 1..3222 16040 99.9 Plus
Pat1.c 3731 Pat1.c 189..3409 1..3222 16040 99.9 Plus
Pat1.b 3391 Pat1.b 174..3391 1..3222 15970 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6487826..6488906 2124..3203 5355 99.9 Plus
chrX 22417052 chrX 6486853..6487531 1288..1966 3380 99.9 Plus
chrX 22417052 chrX 6485649..6486236 374..961 2910 99.7 Plus
chrX 22417052 chrX 6483721..6484044 56..374 1390 96.6 Plus
chrX 22417052 chrX 6486377..6486602 961..1186 1130 100 Plus
chrX 22417052 chrX 6487604..6487761 1966..2123 790 100 Plus
chrX 22417052 chrX 6486672..6486774 1186..1288 485 98.1 Plus
chrX 22417052 chrX 6483235..6483289 1..55 260 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6595536..6596634 2124..3222 5465 99.8 Plus
X 23542271 X 6594564..6595242 1288..1966 3395 100 Plus
X 23542271 X 6593360..6593947 374..961 2940 100 Plus
X 23542271 X 6591446..6591763 56..374 1545 99.7 Plus
X 23542271 X 6594088..6594313 961..1186 1130 100 Plus
X 23542271 X 6595314..6595471 1966..2123 790 100 Plus
X 23542271 X 6594383..6594485 1186..1288 515 100 Plus
X 23542271 X 6590951..6591005 1..55 275 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6603634..6604732 2124..3222 5465 99.8 Plus
X 23527363 X 6602662..6603340 1288..1966 3395 100 Plus
X 23527363 X 6601458..6602045 374..961 2940 100 Plus
X 23527363 X 6599544..6599861 56..374 1555 99.6 Plus
X 23527363 X 6602186..6602411 961..1186 1130 100 Plus
X 23527363 X 6603412..6603569 1966..2123 790 100 Plus
X 23527363 X 6602481..6602583 1186..1288 515 100 Plus
X 23527363 X 6599049..6599103 1..55 275 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:48:02 has no hits.

GH10889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:10 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6486673..6486774 1187..1288 98 -> Plus
chrX 6483235..6483289 1..55 98 -> Plus
chrX 6483721..6484044 56..374 96 -> Plus
chrX 6485650..6486236 375..961 99 -> Plus
chrX 6486378..6486602 962..1186 100 -> Plus
chrX 6486854..6487530 1289..1965 99 -> Plus
chrX 6487604..6487761 1966..2123 100 -> Plus
chrX 6487826..6488906 2124..3203 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:18 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 1..2061 195..2255 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:27 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 1..2061 195..2255 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:37 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 1..2061 195..2255 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:13 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 1..2061 195..2255 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:42:00 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 1..2061 195..2255 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:54 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 174..3375 1..3203 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:27 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 174..3375 1..3203 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:37 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 176..3377 1..3203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:13 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 174..3375 1..3203 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:42:00 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
Pat1-RA 176..3377 1..3203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:10 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
X 6590951..6591005 1..55 100 -> Plus
X 6591446..6591763 56..374 99 -> Plus
X 6593361..6593947 375..961 100 -> Plus
X 6594089..6594313 962..1186 100 -> Plus
X 6594384..6594485 1187..1288 100 -> Plus
X 6594565..6595241 1289..1965 100 -> Plus
X 6595314..6595471 1966..2123 100 -> Plus
X 6595536..6596615 2124..3203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:10 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
X 6590951..6591005 1..55 100 -> Plus
X 6591446..6591763 56..374 99 -> Plus
X 6593361..6593947 375..961 100 -> Plus
X 6594089..6594313 962..1186 100 -> Plus
X 6594384..6594485 1187..1288 100 -> Plus
X 6594565..6595241 1289..1965 100 -> Plus
X 6595314..6595471 1966..2123 100 -> Plus
X 6595536..6596615 2124..3203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:10 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
X 6590951..6591005 1..55 100 -> Plus
X 6591446..6591763 56..374 99 -> Plus
X 6593361..6593947 375..961 100 -> Plus
X 6594089..6594313 962..1186 100 -> Plus
X 6594384..6594485 1187..1288 100 -> Plus
X 6594565..6595241 1289..1965 100 -> Plus
X 6595314..6595471 1966..2123 100 -> Plus
X 6595536..6596615 2124..3203 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:37 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6484984..6485038 1..55 100 -> Plus
arm_X 6485479..6485796 56..374 99 -> Plus
arm_X 6487394..6487980 375..961 100 -> Plus
arm_X 6488122..6488346 962..1186 100 -> Plus
arm_X 6488417..6488518 1187..1288 100 -> Plus
arm_X 6488598..6489274 1289..1965 100 -> Plus
arm_X 6489347..6489504 1966..2123 100 -> Plus
arm_X 6489569..6490648 2124..3203 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:41 Download gff for GH10889.complete
Subject Subject Range Query Range Percent Splice Strand
X 6599049..6599103 1..55 100 -> Plus
X 6603412..6603569 1966..2123 100 -> Plus
X 6599544..6599861 56..374 99 -> Plus
X 6601459..6602045 375..961 100 -> Plus
X 6602187..6602411 962..1186 100 -> Plus
X 6602482..6602583 1187..1288 100 -> Plus
X 6602663..6603339 1289..1965 100 -> Plus
X 6603634..6604713 2124..3203 100   Plus

GH10889.hyp Sequence

Translation from 1 to 2254

> GH10889.hyp
DFSRRGNWTIGCVPLPSCSVTPPASPPFPDWLASLQNQKKTALASIYIHI
FKKKKKERQHQNSEMAGQQLVVLIPKINPNSPKTLYDLSLQALIGSMNTK
IPALDRISRLAELPRNLLIDVYEMMSQQESLKDTLLEELAQLEVFARLVR
YPFARSQLLRIMASLMASQKMLAKRLSENYVSRYEVVAGHEEEELESSMD
TVEDRSTEFSSLYTYDSESTNADSISDFNDEFSADIGSIVGLPHRRATQE
ELDAINDSGLEELSAVELQVIDLGLRLGSFLSEAGWMQESITVLACLNVR
LKDLPTHKHWLQFRLDCLQRLLYAESAHCNFKEAEKTYAELMGLNKWLNK
SVPNQLVAITYSQISAMYFARNEYKNSHLWSGLAMRFLKGYANPRTIIDV
LRQAAKACVVKRDFARANLLICQAVRRAREYFGPTHQKYGDALLDYGFFL
LNVDSVFQSVNIYKEALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTG
DFSCAQDHVDKAVNIMQHLVPSNHLMLASAKRVKALLLEEIALDKMADGI
DEEDLLLQSEELHNFALLLSLQVFGEVNVQTAKHYGNLGRLYQTMNRFEE
AERMHKKAIKIKSELLGHFDYEVGLSIGHLASLYNYQMKKYRDAEQLYMR
SIDISLRLFGNSYSGLEYDYLGLCHVYETLHNFEKYLKYAHKLENWQMLR
GQNLTQNKSSYPAIEVDYSIEEVKAKYFSMCASKKSAHPSVHEEDTVNEN
*

GH10889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pat1-PC 686 CG10695-PC 1..686 65..750 3512 100 Plus
Pat1-PA 686 CG10695-PA 1..686 65..750 3512 100 Plus
Pat1-PB 685 CG10695-PB 1..685 65..750 3495 99.9 Plus

GH10889.pep Sequence

Translation from 194 to 2254

> GH10889.pep
MAGQQLVVLIPKINPNSPKTLYDLSLQALIGSMNTKIPALDRISRLAELP
RNLLIDVYEMMSQQESLKDTLLEELAQLEVFARLVRYPFARSQLLRIMAS
LMASQKMLAKRLSENYVSRYEVVAGHEEEELESSMDTVEDRSTEFSSLYT
YDSESTNADSISDFNDEFSADIGSIVGLPHRRATQEELDAINDSGLEELS
AVELQVIDLGLRLGSFLSEAGWMQESITVLACLNVRLKDLPTHKHWLQFR
LDCLQRLLYAESAHCNFKEAEKTYAELMGLNKWLNKSVPNQLVAITYSQI
SAMYFARNEYKNSHLWSGLAMRFLKGYANPRTIIDVLRQAAKACVVKRDF
ARANLLICQAVRRAREYFGPTHQKYGDALLDYGFFLLNVDSVFQSVNIYK
EALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVN
IMQHLVPSNHLMLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHN
FALLLSLQVFGEVNVQTAKHYGNLGRLYQTMNRFEEAERMHKKAIKIKSE
LLGHFDYEVGLSIGHLASLYNYQMKKYRDAEQLYMRSIDISLRLFGNSYS
GLEYDYLGLCHVYETLHNFEKYLKYAHKLENWQMLRGQNLTQNKSSYPAI
EVDYSIEEVKAKYFSMCASKKSAHPSVHEEDTVNEN*

GH10889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22267-PA 683 GF22267-PA 8..669 14..666 2571 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19597-PA 697 GG19597-PA 1..697 1..686 3073 83.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12689-PA 695 GH12689-PA 16..689 14..675 2210 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pat1-PC 686 CG10695-PC 1..686 1..686 3512 100 Plus
Pat1-PA 686 CG10695-PA 1..686 1..686 3512 100 Plus
Pat1-PB 685 CG10695-PB 1..685 1..686 3495 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16363-PA 676 GI16363-PA 7..672 14..675 2384 69.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14949-PA 697 GL14949-PA 17..682 14..668 2560 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10502-PA 698 GA10502-PA 17..692 14..678 2555 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12501-PA 602 GM12501-PA 1..599 1..682 2729 78.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16806-PA 795 GD16806-PA 1..590 1..588 2767 88.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16732-PA 705 GJ16732-PA 3..700 2..675 2325 66.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17367-PA 701 GK17367-PA 1..656 1..664 2472 71.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16757-PA 697 GE16757-PA 1..697 1..686 3072 83.5 Plus