Clone GH10944 Report

Search the DGRC for GH10944

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:109
Well:44
Vector:pOT2
Associated Gene/TranscriptCG4281-RA
Protein status:GH10944.pep: gold
Preliminary Size:2003
Sequenced Size:2679

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4281 2001-01-01 Release 2 assignment
CG4281 2001-10-10 Blastp of sequenced clone
CG4281 2008-04-29 Release 5.5 accounting
CG4281 2008-08-15 Release 5.9 accounting
CG4281 2008-12-18 5.12 accounting

Clone Sequence Records

GH10944.complete Sequence

2679 bp (2679 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060676

> GH10944.complete
TTTTCGAAGACACTATCGCAAATCGCATACCGAAGTGATTTCTGGTGCAT
TTTTGTTTCTTGTTTGTGCACGTGCAGAACGCAAATAAATGCGCCGAGCC
TGAGTCAATGCGAGCGGACAGGAGGACAGCGGATAGCGGGCGGCCATGGA
TCAATTCTCGCACGATCTGACGTTGGCTCTGGACCTGACGCTGATGGACA
GGGCTAGTGGCGGCGTCGGTAGGTGGGGCTCCCGCCGCAGGACACGTTCC
ACGGGCAATCTGCCCTGCGCCCCTCAGCCCACGGAGGACTCCTCGAGCAG
TCCCACGGATGCGCTAAACCAGGGGCACCATCACGGGCATCATGGCCACC
ACCACCATCACCACCACACAAGTGCCAACGTGGACGGACTGGACACACAC
AACCTTAAGTTGCCAGCCAGCGACTCTGACGAAAAGGCGGAGGCGATGCT
GCCTCTGCGTCTGCCACTGACCTTGCCTATACGCATGGGTGCCCTGGAGT
CCGACTCGCTTAACGAGACCACCTTCAGTCCAGCCAGATTCTACAAGCCC
AACTCGCGAAGGAAACGCAAGATCAAACGGATGTCCATGGAGTTCGAGTT
CAGCAAGGATACATCACACACCTTCACCGAATCGCCACTGCAGCCCAGCC
TGCTAAGTAGCAGCGGTTCTGCTACTGGAACCATACGCAAGCGATTGTTG
AAAATTGACGCCACTGGACATCGCTCGCATTTGTTCTTCTGCGGCAAACG
CAAGCGCTCAAACCGTGATCGCTACCATGAGCAGGATTCGGTTAAGCTGT
ACGCCTTGCCACACTCACAAGTAGATGACCAGCACGTAGAGCAACCACAG
CACCAGCAGCAGAGGATGCGCCCCCGCAGCTACTCCTCCACATCGAAGCC
ACTCAGTGACCGCCTGCTTCCACTGAACAAGGGACTGCTGTCGAAGATCA
ACCGAATGGCTGCCCAGGGACAGCAGACTAAGCACACCCAAAAGACTGAG
ACAAAGGACAAGGACTTGAAATGTCATCGTTCTGAAGGACCCGAAGGAGT
GAGCCTGGAGATGGAGGAGCTGCCCGATCAAAAGGACGCGGTCCAGAAGC
TACCTTTGCCAAGTGCTGATTTTACGACCGCCAATTTTAACTCCATCAGC
ATGGACACCATTGTGCCTGTGACCGATATTGATGCCTTGTTATTGAGTAC
GCCACCAGCTGCTCCGCTGCTGCGCAAAAAGGCGCAGGGGCAGGCGCCGG
GACACAGCAGCAGTAGCTCATCCAAAACGGAACGTCGCCGCCGCTTCCAA
ACGTTTCCACAGCCTCAGCTGCAGCTCCAAGCTCAGTCAATGGATTGTAG
CGAACTTTATGACTTCTTAAGCTCTAGTTCCCTGAGCTCGTCCACCGATA
GCGAGGCGGAAGTAGGTGGTCATCGACGGCACGACACCGATCGCGAGGGC
GACGATGAACTCACCGACTGGCCGGGAAACGAATTCGGACCCGGAGCCAG
ATACGATCCAAAAAGGAAGCTTACAAAAAAATCACTACTGCCTCAAATTC
GCTCGGATGACACAATTGGAGAAGATGACACTCTTATGTCTGGCACCGAA
GCGGGAGCGGTGGGTATGGAACCGCCTTCGAAGTCTCCAGTCCAACTTCC
AGAATCTCTTCAGGATCTTTCCCGCTTCCAACCAGCCGGCGTCTCCGAGC
CTATCGAGATTCAGAATGCCTGCTCAGAGATGGAAACAAATGCAGATGGC
ACCATGCCGGCTTCCCGCCAAATCGAGAGTGAGATGTCCGGCGAAACCTC
TAATCCGTTTCTTTCCTCGTCGCCTCCTGGACACGCCCAGGGACAGGAAG
TACGTGAGATACGAGCAGGGTGTCGCCGCATCAATGGCGAGCGTCCAGGA
TTCAGCATCAAGATGAGCGTCAATGAGCGCATCGCCCGATTTTTGCAGGA
TTCGCAACAGACACAGATCCGTTTGCCGGATATAGAGCTTTATGAGACCG
ATAGCATGAGTAATCTGGCCACGCTCTATTCACTTACCATGGTGGTAGAG
CACGGATGTACAGTGCTCACCAAAACCGGGAACACTACGCAGACGGTGAG
CATGGATCATCTTCAACAAGGTCTGCAGCCGCGTGCAGATCTCTTTGGCG
ATTTTAAGCGGCGCTGCTACGGTGAGGAGGGAGAGGAGGAAGGAGAGCAG
CAGCAGCCGCTTCAGCAAGATCCCGGCCAGATTTAGCCCCAGAAAGCAAC
ACTATAATCCAAACAAGACCAATCCCTAGCAAATGCAAACGTACAGCCAT
CAGCACTCGAGGTGAAACTCTTGGCATACGCTTGCATTTCTAGGGTGGAA
GAAACCCTTAATCTATGAATGCTTTTAGCTTGTTTTTGTGAAATCTGTTC
CATGTACATAAGTTGCATCGGTCCGTGTATATACTAACTGACTTCGTTAG
GGAATGGCGCCAGCAAGACGGATACCGGATCCCAGATCCCGTCGGTTTGG
GCTCACGCTTGGAAGCGAGCGAGATGACACGTTTCAGAGACAGAGAGAGA
GGACCGACCGAAAGCCGTCGGCAGCCGTTCCACTGTACAAAATATTTAAT
GTAAGACCTTCAGCGAATATGAATATAAGAAATATATATGTGTGGTCATA
TCCGGAATAAAAAAAAAAAAAAAAAAAAA

GH10944.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4281-RA 2827 CG4281-RA 119..2777 1..2659 13295 100 Plus
CG4281.c 2796 CG4281.c 351..2746 264..2659 11980 100 Plus
CG4281.b 2604 CG4281.b 1..1610 1..1610 8050 100 Plus
CG4281.b 2604 CG4281.b 1609..2604 1663..2658 4980 100 Plus
CG4281.c 2796 CG4281.c 35..297 1..263 1315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1956860..1958405 2080..535 7730 100 Minus
chrX 22417052 chrX 1956227..1956806 2658..2079 2900 100 Minus
chrX 22417052 chrX 1958461..1958734 537..264 1370 100 Minus
chrX 22417052 chrX 1958788..1959050 263..1 1315 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2062946..2064491 2080..535 7730 100 Minus
X 23542271 X 2062312..2062892 2659..2079 2905 100 Minus
X 23542271 X 2064547..2064820 537..264 1370 100 Minus
X 23542271 X 2064874..2065136 263..1 1315 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2071044..2072589 2080..535 7730 100 Minus
X 23527363 X 2070410..2070990 2659..2079 2905 100 Minus
X 23527363 X 2072645..2072918 537..264 1370 100 Minus
X 23527363 X 2072972..2073234 263..1 1315 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:49:19 has no hits.

GH10944.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:50:03 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1956227..1956805 2080..2658 100 <- Minus
chrX 1956861..1958402 538..2079 100 <- Minus
chrX 1958461..1958734 264..537 84 <- Minus
chrX 1958788..1959050 1..263 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:28 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2091 146..2236 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:58 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2091 146..2236 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:21 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2091 146..2236 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:02 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2091 146..2236 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:06 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2091 146..2236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:34 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2658 1..2658 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:58 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2658 1..2658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:21 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 7..2664 1..2658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:02 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 1..2654 1..2654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:06 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
CG4281-RA 7..2664 1..2658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:03 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
X 2062313..2062891 2080..2658 100 <- Minus
X 2062947..2064488 538..2079 100 <- Minus
X 2064547..2064820 264..537 100 <- Minus
X 2064874..2065136 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:03 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
X 2062313..2062891 2080..2658 100 <- Minus
X 2062947..2064488 538..2079 100 <- Minus
X 2064547..2064820 264..537 100 <- Minus
X 2064874..2065136 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:03 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
X 2062313..2062891 2080..2658 100 <- Minus
X 2062947..2064488 538..2079 100 <- Minus
X 2064547..2064820 264..537 100 <- Minus
X 2064874..2065136 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:21 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1956346..1956924 2080..2658 100 <- Minus
arm_X 1956980..1958521 538..2079 100 <- Minus
arm_X 1958580..1958853 264..537 100 <- Minus
arm_X 1958907..1959169 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:13 Download gff for GH10944.complete
Subject Subject Range Query Range Percent Splice Strand
X 2070411..2070989 2080..2658 100 <- Minus
X 2071045..2072586 538..2079 100 <- Minus
X 2072645..2072918 264..537 100 <- Minus
X 2072972..2073234 1..263 100   Minus

GH10944.pep Sequence

Translation from 145 to 2235

> GH10944.pep
MDQFSHDLTLALDLTLMDRASGGVGRWGSRRRTRSTGNLPCAPQPTEDSS
SSPTDALNQGHHHGHHGHHHHHHHTSANVDGLDTHNLKLPASDSDEKAEA
MLPLRLPLTLPIRMGALESDSLNETTFSPARFYKPNSRRKRKIKRMSMEF
EFSKDTSHTFTESPLQPSLLSSSGSATGTIRKRLLKIDATGHRSHLFFCG
KRKRSNRDRYHEQDSVKLYALPHSQVDDQHVEQPQHQQQRMRPRSYSSTS
KPLSDRLLPLNKGLLSKINRMAAQGQQTKHTQKTETKDKDLKCHRSEGPE
GVSLEMEELPDQKDAVQKLPLPSADFTTANFNSISMDTIVPVTDIDALLL
STPPAAPLLRKKAQGQAPGHSSSSSSKTERRRRFQTFPQPQLQLQAQSMD
CSELYDFLSSSSLSSSTDSEAEVGGHRRHDTDREGDDELTDWPGNEFGPG
ARYDPKRKLTKKSLLPQIRSDDTIGEDDTLMSGTEAGAVGMEPPSKSPVQ
LPESLQDLSRFQPAGVSEPIEIQNACSEMETNADGTMPASRQIESEMSGE
TSNPFLSSSPPGHAQGQEVREIRAGCRRINGERPGFSIKMSVNERIARFL
QDSQQTQIRLPDIELYETDSMSNLATLYSLTMVVEHGCTVLTKTGNTTQT
VSMDHLQQGLQPRADLFGDFKRRCYGEEGEEEGEQQQPLQQDPGQI*

GH10944.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21980-PA 664 GF21980-PA 1..660 1..687 2317 75.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12655-PA 687 GG12655-PA 1..687 1..696 2940 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24404-PA 796 GH24404-PA 1..767 1..677 1688 54.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4281-PA 696 CG4281-PA 1..696 1..696 3635 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15424-PA 752 GI15424-PA 1..720 1..681 1919 60.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15125-PA 139 GL15125-PA 1..120 101..249 281 48.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18079-PA 744 GA18079-PA 1..715 1..677 1992 63.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18923-PA 665 GM18923-PA 1..644 1..675 2802 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24617-PA 696 GD24617-PA 1..696 1..696 3586 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16384-PA 755 GJ16384-PA 1..725 1..680 1963 60.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25742-PA 761 GK25742-PA 1..718 1..676 1721 58.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16984-PA 695 GE16984-PA 1..677 1..675 3011 95.6 Plus

GH10944.hyp Sequence

Translation from 145 to 2235

> GH10944.hyp
MDQFSHDLTLALDLTLMDRASGGVGRWGSRRRTRSTGNLPCAPQPTEDSS
SSPTDALNQGHHHGHHGHHHHHHHTSANVDGLDTHNLKLPASDSDEKAEA
MLPLRLPLTLPIRMGALESDSLNETTFSPARFYKPNSRRKRKIKRMSMEF
EFSKDTSHTFTESPLQPSLLSSSGSATGTIRKRLLKIDATGHRSHLFFCG
KRKRSNRDRYHEQDSVKLYALPHSQVDDQHVEQPQHQQQRMRPRSYSSTS
KPLSDRLLPLNKGLLSKINRMAAQGQQTKHTQKTETKDKDLKCHRSEGPE
GVSLEMEELPDQKDAVQKLPLPSADFTTANFNSISMDTIVPVTDIDALLL
STPPAAPLLRKKAQGQAPGHSSSSSSKTERRRRFQTFPQPQLQLQAQSMD
CSELYDFLSSSSLSSSTDSEAEVGGHRRHDTDREGDDELTDWPGNEFGPG
ARYDPKRKLTKKSLLPQIRSDDTIGEDDTLMSGTEAGAVGMEPPSKSPVQ
LPESLQDLSRFQPAGVSEPIEIQNACSEMETNADGTMPASRQIESEMSGE
TSNPFLSSSPPGHAQGQEVREIRAGCRRINGERPGFSIKMSVNERIARFL
QDSQQTQIRLPDIELYETDSMSNLATLYSLTMVVEHGCTVLTKTGNTTQT
VSMDHLQQGLQPRADLFGDFKRRCYGEEGEEEGEQQQPLQQDPGQI*

GH10944.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4281-PA 696 CG4281-PA 1..696 1..696 3635 100 Plus