Clone GH10971 Report

Search the DGRC for GH10971

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:109
Well:71
Vector:pOT2
Associated Gene/TranscriptDredd-RF
Protein status:GH10971.pep: gold
Preliminary Size:2200
Sequenced Size:1889

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7486 2001-01-01 Release 2 assignment
CG7486 2001-09-19 Blastp of sequenced clone
CG7486 2003-01-01 Sim4 clustering to Release 3
Dredd 2008-04-29 Release 5.5 accounting
Dredd 2008-08-15 Release 5.9 accounting
Dredd 2008-12-18 5.12 accounting

Clone Sequence Records

GH10971.complete Sequence

1889 bp (1889 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060275

> GH10971.complete
CGACATTTTTAAATATTAACCGATTGTTGAACCGGTTGTTAAACTTCTAT
ATCAAAAAACTACATCATCTGTTTCTTAAGTATAATTAATAGGTAGCACC
CCGATCTTTCGCTATTGCAGAAAACATATCCATTTATCGATATCGATCGG
TGGAAGCTCTTCAGGCCACGGCTATCGGATGTCAGCGAGTGCAATTTATC
GGCCATTTCCTAAAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCC
GGATCAAACCTGTTGATTCATCTAGACACCATCGATCAGAACGATCTGAT
CTACGTGGAACGTGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTC
TGCTTTATGGCGACGACCACTCGGATGCCACCTACATTCTGCAGAAACTT
TTGGCCATGACACGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTT
CGCCAAGTCCCGGCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGT
GCATTATTGGGGCCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAG
GAGCTGCGAATGCACTACTTGCCGCATATCGCTGGGATCACGCTGCATGT
CCATCCTCTGTTGAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGG
TGCAGAGTGGCCGCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAG
CAGGCAGGAGATCCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTT
TTTGCTGGACTGGCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATG
CCGCAGGCAGCGATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGT
CTGCAGGCGCAAGCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCC
GGAGCCAGATGCGGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTG
AATCGGATAACCAGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAG
TTGACCCGGGAGAACGCAGGAATCGCCTTGATTATCAACCAGCAGAAGTT
TCACCGGAATGTTAGCAGGGATAATATGGTTTCATCTCTGCAATATTGAG
TAACAAAAAGAAGTACAACATTGCCCTTCTCCACAGAAATTTCTGTCGCC
CGACCCACTGCGTAGACGGGATGGCACGGATGTGGATAAAGAACGACTAA
TCGAGGTGTTTTCCTCGATGGGATACAATGTGGAGGCGTACGACAACGTG
GATCACATGGGCATCATAGAGCGCATTCGCAGTGCGTGCGATAGATCGCT
CGTGCGCGATTCCCTAGTGGTCTTCATCCTGAGCCACGGCTTCGAGGAGG
CCGTCTACGCATCCAACAGCATCGCCATGAAGATCACGGATATCGAGGAC
TTGCTCTGCAGCTACGACACCCTGTACTACAAACCGAAGTTGCTAATCAT
ACAAGCCTGCCAGGAGAAGCTTGTCCATAAAAAGAAGCCAAATGAGCTCT
TTAGGATAGACGTGACCACCGTGTCGCCGGACCAGCACATCGACATGCTG
CGGGCCATGTCCACGGTAAATGGATATGCTGCTCTGCGCCACACCCAAAC
AGGTAGCTGGTTTATCGGGAGCCTGTGCGATGCCATCGATCGCCGTTCCG
CCAGTGAACACATCGCCGATATCCTGACGATTGTCACCAACGAAGTGTCT
AAAAAGCGAGGCAGTAATGACGAGTCCATGGTGCCGAATGTTAAAAGCAC
ATTTCGCCAGCACGTGTACTTTCCACCTCGTCTGTGATTTTGGTTTTTAA
CGTTAGCGCAGTTGTACGTCCACTCAAATTGCTCTATAAAGGTAAAAATA
CATTTTTATAAAGTTTAGTGTAAAAAAAAAAAAAAAAAA

GH10971.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 2023 Dredd-RF 51..1922 1..1872 9360 100 Plus
Dredd-RE 1965 Dredd-RE 51..1128 1..1078 5390 100 Plus
Dredd-RD 1897 Dredd-RD 1..1060 1..1060 5300 100 Plus
Dredd-RE 1965 Dredd-RE 1128..1864 1136..1872 3685 100 Plus
Dredd-RD 1897 Dredd-RD 1061..1796 1137..1872 3680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 528104..529277 1506..333 5840 99.8 Minus
chrX 22417052 chrX 529378..529713 336..1 1680 100 Minus
chrX 22417052 chrX 527608..527826 1871..1653 1095 100 Minus
chrX 22417052 chrX 527888..528042 1654..1500 775 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634118..635291 1506..333 5840 99.8 Minus
X 23542271 X 635392..635727 336..1 1680 100 Minus
X 23542271 X 633621..633840 1872..1653 1100 100 Minus
X 23542271 X 633902..634056 1654..1500 775 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 642216..643389 1506..333 5840 99.8 Minus
X 23527363 X 643490..643825 336..1 1680 100 Minus
X 23527363 X 641719..641938 1872..1653 1100 100 Minus
X 23527363 X 642000..642154 1654..1500 775 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:51:41 has no hits.

GH10971.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:42 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 527888..528042 1500..1654 100 <- Minus
chrX 527608..527824 1655..1871 100 <- Minus
chrX 528111..529275 335..1499 100 <- Minus
chrX 529380..529713 1..334 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:33 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 245..1099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:31 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 245..1099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:59:33 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 245..1099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:17 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 245..1099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:33 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 245..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:59 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..1871 1..1871 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:31 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..1871 1..1871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:59:33 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..1689 183..1871 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:17 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..1871 1..1871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:33 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..1689 183..1871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:42 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
X 633622..633838 1655..1871 100 <- Minus
X 633902..634056 1500..1654 100 <- Minus
X 634125..635289 335..1499 100 <- Minus
X 635394..635727 1..334 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:42 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
X 633622..633838 1655..1871 100 <- Minus
X 633902..634056 1500..1654 100 <- Minus
X 634125..635289 335..1499 100 <- Minus
X 635394..635727 1..334 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:42 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
X 633622..633838 1655..1871 100 <- Minus
X 633902..634056 1500..1654 100 <- Minus
X 634125..635289 335..1499 100 <- Minus
X 635394..635727 1..334 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:59:33 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 527935..528089 1500..1654 100 <- Minus
arm_X 527655..527871 1655..1871 100 <- Minus
arm_X 528158..529322 335..1499 100 <- Minus
arm_X 529427..529760 1..334 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:46 Download gff for GH10971.complete
Subject Subject Range Query Range Percent Splice Strand
X 641720..641936 1655..1871 100 <- Minus
X 642000..642154 1500..1654 100 <- Minus
X 642223..643387 335..1499 100 <- Minus
X 643492..643825 1..334 100   Minus

GH10971.pep Sequence

Translation from 178 to 1098

> GH10971.pep
MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA
QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR
RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR
MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS
IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA
MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM
VSSLQY*

GH10971.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22232-PA 514 GF22232-PA 1..297 15..300 949 63.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12750-PA 503 GG12750-PA 1..284 23..294 1203 80.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24782-PA 500 GH24782-PA 5..287 32..298 711 53 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-PF 284 CG7486-PF 1..284 23..306 1456 100 Plus
Dredd-PE 494 CG7486-PE 1..278 23..300 1428 100 Plus
Dredd-PD 488 CG7486-PD 1..272 23..294 1398 100 Plus
Dredd-PG 440 CG7486-PG 1..224 77..300 1149 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21675-PA 486 GI21675-PA 5..275 32..301 729 54.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26745-PA 479 GL26745-PA 1..254 23..301 683 51.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20387-PA 511 GA20387-PA 1..286 23..301 864 58.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19030-PA 496 GM19030-PA 1..278 23..298 1306 89.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Dredd-PA 183 GD16467-PA 1..180 23..202 911 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16702-PA 496 GJ16702-PA 5..283 32..298 733 52.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16170-PA 520 GK16170-PA 3..299 19..295 719 51.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Dredd-PA 507 GE16575-PA 1..288 23..294 1195 79.2 Plus

GH10971.hyp Sequence

Translation from 178 to 1098

> GH10971.hyp
MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA
QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR
RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR
MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS
IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA
MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM
VSSLQY*

GH10971.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-PF 284 CG7486-PF 1..284 23..306 1456 100 Plus
Dredd-PE 494 CG7486-PE 1..278 23..300 1428 100 Plus
Dredd-PD 488 CG7486-PD 1..272 23..294 1398 100 Plus
Dredd-PG 440 CG7486-PG 1..224 77..300 1149 100 Plus