BDGP Sequence Production Resources |
Search the DGRC for GH10971
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 109 |
Well: | 71 |
Vector: | pOT2 |
Associated Gene/Transcript | Dredd-RF |
Protein status: | GH10971.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1889 |
Gene | Date | Evidence |
---|---|---|
CG7486 | 2001-01-01 | Release 2 assignment |
CG7486 | 2001-09-19 | Blastp of sequenced clone |
CG7486 | 2003-01-01 | Sim4 clustering to Release 3 |
Dredd | 2008-04-29 | Release 5.5 accounting |
Dredd | 2008-08-15 | Release 5.9 accounting |
Dredd | 2008-12-18 | 5.12 accounting |
1889 bp (1889 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060275
> GH10971.complete CGACATTTTTAAATATTAACCGATTGTTGAACCGGTTGTTAAACTTCTAT ATCAAAAAACTACATCATCTGTTTCTTAAGTATAATTAATAGGTAGCACC CCGATCTTTCGCTATTGCAGAAAACATATCCATTTATCGATATCGATCGG TGGAAGCTCTTCAGGCCACGGCTATCGGATGTCAGCGAGTGCAATTTATC GGCCATTTCCTAAAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCC GGATCAAACCTGTTGATTCATCTAGACACCATCGATCAGAACGATCTGAT CTACGTGGAACGTGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTC TGCTTTATGGCGACGACCACTCGGATGCCACCTACATTCTGCAGAAACTT TTGGCCATGACACGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTT CGCCAAGTCCCGGCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGT GCATTATTGGGGCCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAG GAGCTGCGAATGCACTACTTGCCGCATATCGCTGGGATCACGCTGCATGT CCATCCTCTGTTGAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGG TGCAGAGTGGCCGCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAG CAGGCAGGAGATCCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTT TTTGCTGGACTGGCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATG CCGCAGGCAGCGATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGT CTGCAGGCGCAAGCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCC GGAGCCAGATGCGGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTG AATCGGATAACCAGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAG TTGACCCGGGAGAACGCAGGAATCGCCTTGATTATCAACCAGCAGAAGTT TCACCGGAATGTTAGCAGGGATAATATGGTTTCATCTCTGCAATATTGAG TAACAAAAAGAAGTACAACATTGCCCTTCTCCACAGAAATTTCTGTCGCC CGACCCACTGCGTAGACGGGATGGCACGGATGTGGATAAAGAACGACTAA TCGAGGTGTTTTCCTCGATGGGATACAATGTGGAGGCGTACGACAACGTG GATCACATGGGCATCATAGAGCGCATTCGCAGTGCGTGCGATAGATCGCT CGTGCGCGATTCCCTAGTGGTCTTCATCCTGAGCCACGGCTTCGAGGAGG CCGTCTACGCATCCAACAGCATCGCCATGAAGATCACGGATATCGAGGAC TTGCTCTGCAGCTACGACACCCTGTACTACAAACCGAAGTTGCTAATCAT ACAAGCCTGCCAGGAGAAGCTTGTCCATAAAAAGAAGCCAAATGAGCTCT TTAGGATAGACGTGACCACCGTGTCGCCGGACCAGCACATCGACATGCTG CGGGCCATGTCCACGGTAAATGGATATGCTGCTCTGCGCCACACCCAAAC AGGTAGCTGGTTTATCGGGAGCCTGTGCGATGCCATCGATCGCCGTTCCG CCAGTGAACACATCGCCGATATCCTGACGATTGTCACCAACGAAGTGTCT AAAAAGCGAGGCAGTAATGACGAGTCCATGGTGCCGAATGTTAAAAGCAC ATTTCGCCAGCACGTGTACTTTCCACCTCGTCTGTGATTTTGGTTTTTAA CGTTAGCGCAGTTGTACGTCCACTCAAATTGCTCTATAAAGGTAAAAATA CATTTTTATAAAGTTTAGTGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dredd-RF | 2023 | Dredd-RF | 51..1922 | 1..1872 | 9360 | 100 | Plus |
Dredd-RE | 1965 | Dredd-RE | 51..1128 | 1..1078 | 5390 | 100 | Plus |
Dredd-RD | 1897 | Dredd-RD | 1..1060 | 1..1060 | 5300 | 100 | Plus |
Dredd-RE | 1965 | Dredd-RE | 1128..1864 | 1136..1872 | 3685 | 100 | Plus |
Dredd-RD | 1897 | Dredd-RD | 1061..1796 | 1137..1872 | 3680 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 528104..529277 | 1506..333 | 5840 | 99.8 | Minus |
chrX | 22417052 | chrX | 529378..529713 | 336..1 | 1680 | 100 | Minus |
chrX | 22417052 | chrX | 527608..527826 | 1871..1653 | 1095 | 100 | Minus |
chrX | 22417052 | chrX | 527888..528042 | 1654..1500 | 775 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 634118..635291 | 1506..333 | 5840 | 99.8 | Minus |
X | 23542271 | X | 635392..635727 | 336..1 | 1680 | 100 | Minus |
X | 23542271 | X | 633621..633840 | 1872..1653 | 1100 | 100 | Minus |
X | 23542271 | X | 633902..634056 | 1654..1500 | 775 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 642216..643389 | 1506..333 | 5840 | 99.8 | Minus |
X | 23527363 | X | 643490..643825 | 336..1 | 1680 | 100 | Minus |
X | 23527363 | X | 641719..641938 | 1872..1653 | 1100 | 100 | Minus |
X | 23527363 | X | 642000..642154 | 1654..1500 | 775 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 527888..528042 | 1500..1654 | 100 | <- | Minus |
chrX | 527608..527824 | 1655..1871 | 100 | <- | Minus |
chrX | 528111..529275 | 335..1499 | 100 | <- | Minus |
chrX | 529380..529713 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..855 | 245..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..855 | 245..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..855 | 245..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..855 | 245..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..855 | 245..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..1871 | 1..1871 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..1871 | 1..1871 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..1689 | 183..1871 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..1871 | 1..1871 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dredd-RF | 1..1689 | 183..1871 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 633622..633838 | 1655..1871 | 100 | <- | Minus |
X | 633902..634056 | 1500..1654 | 100 | <- | Minus |
X | 634125..635289 | 335..1499 | 100 | <- | Minus |
X | 635394..635727 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 633622..633838 | 1655..1871 | 100 | <- | Minus |
X | 633902..634056 | 1500..1654 | 100 | <- | Minus |
X | 634125..635289 | 335..1499 | 100 | <- | Minus |
X | 635394..635727 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 633622..633838 | 1655..1871 | 100 | <- | Minus |
X | 633902..634056 | 1500..1654 | 100 | <- | Minus |
X | 634125..635289 | 335..1499 | 100 | <- | Minus |
X | 635394..635727 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 527935..528089 | 1500..1654 | 100 | <- | Minus |
arm_X | 527655..527871 | 1655..1871 | 100 | <- | Minus |
arm_X | 528158..529322 | 335..1499 | 100 | <- | Minus |
arm_X | 529427..529760 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 641720..641936 | 1655..1871 | 100 | <- | Minus |
X | 642000..642154 | 1500..1654 | 100 | <- | Minus |
X | 642223..643387 | 335..1499 | 100 | <- | Minus |
X | 643492..643825 | 1..334 | 100 | Minus |
Translation from 178 to 1098
> GH10971.pep MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM VSSLQY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22232-PA | 514 | GF22232-PA | 1..297 | 15..300 | 949 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12750-PA | 503 | GG12750-PA | 1..284 | 23..294 | 1203 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24782-PA | 500 | GH24782-PA | 5..287 | 32..298 | 711 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dredd-PF | 284 | CG7486-PF | 1..284 | 23..306 | 1456 | 100 | Plus |
Dredd-PE | 494 | CG7486-PE | 1..278 | 23..300 | 1428 | 100 | Plus |
Dredd-PD | 488 | CG7486-PD | 1..272 | 23..294 | 1398 | 100 | Plus |
Dredd-PG | 440 | CG7486-PG | 1..224 | 77..300 | 1149 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21675-PA | 486 | GI21675-PA | 5..275 | 32..301 | 729 | 54.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26745-PA | 479 | GL26745-PA | 1..254 | 23..301 | 683 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20387-PA | 511 | GA20387-PA | 1..286 | 23..301 | 864 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19030-PA | 496 | GM19030-PA | 1..278 | 23..298 | 1306 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Dredd-PA | 183 | GD16467-PA | 1..180 | 23..202 | 911 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16702-PA | 496 | GJ16702-PA | 5..283 | 32..298 | 733 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16170-PA | 520 | GK16170-PA | 3..299 | 19..295 | 719 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Dredd-PA | 507 | GE16575-PA | 1..288 | 23..294 | 1195 | 79.2 | Plus |
Translation from 178 to 1098
> GH10971.hyp MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM VSSLQY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dredd-PF | 284 | CG7486-PF | 1..284 | 23..306 | 1456 | 100 | Plus |
Dredd-PE | 494 | CG7486-PE | 1..278 | 23..300 | 1428 | 100 | Plus |
Dredd-PD | 488 | CG7486-PD | 1..272 | 23..294 | 1398 | 100 | Plus |
Dredd-PG | 440 | CG7486-PG | 1..224 | 77..300 | 1149 | 100 | Plus |