Clone GH11003 Report

Search the DGRC for GH11003

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:3
Vector:pOT2
Associated Gene/TranscriptCG17450-RA
Protein status:GH11003.pep: gold
Sequenced Size:1839

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17450 2008-04-23 Manual selection by Ken Wan
CG17450 2008-04-29 Picked prior to 5.5
CG17450 2008-04-29 Picked prior to 5.5

Clone Sequence Records

GH11003.complete Sequence

1839 bp assembled on 2009-03-09

GenBank Submission: BT072818.1

> GH11003.complete
CTCTGTGCTTTTTGAAATCATTTGTTTGTTCCCAACACCCAGTCCAAATT
CCAAGTGGCACAAATTATTAGTACTTCACTATCCCAACGATTCGACTTAT
AACCGATACCAATACCGAAACCTCCGACCACGATGAGTCACAATGGGGCT
GGTTTGGGAGCCGGATCCGGCGGATCGCCCATCCCGCCAACCACGGTCAT
GTATTCCCAATTGCAGCCATGGAGCCAGGCGGGCGCTCCGCCCTGCATGG
AGCCCGTCATGGGGCCTTCGATCCCGCCGAGAGTTGGCGCCGCCTACGAG
ACGCCCACGAAGCACCCGTGGCGCCCTGCTATGGCCTATGAGCTAATCCA
GGTGAAGCATATGCCCGAGCAGCCGGTGACCAACCAGCTGACCAAGCAGT
GCTTCCTGCCCAAGGGCATGAAGACGGACGGCATGATATTCCCCAACTTG
GTCACCGGGTTCGATCGCAATCCACAGCACGCCGCCCGGGCTGCCCTCTA
CACGCGGTACACCAGCAACGAGTGGTACAACAACAACATGACCAAGTACT
CCGAGTCGAACATGAATCGCAACCTCTCGGAGCGCATGCGGAATGACGCA
GTGCGTCTGATGCGGGAGACGGACGAGAAGGCCACCTCGGGCCAGAGGGA
CGCCGGCCGAAGGCTGGGCGAGCGCATCACCGACCTGACCTTCTGGCGCA
ACGAGCTGAACGCGGAGCTGGAGAAGCTGATCGCCGAGATGTCGGACATC
AACGAGCTGCAGCGGCAGTGCGGCAAGGCACTTCTCGACCTGGAGATACC
ACTGCACATCGCCCAGGAGTGCCTCTTTCACCGAGAGTCGCGCCAGGGCA
CGGAGAAGGTGCATGACATCGTGGAGAAGGCCCTCCTCGTTGAGATCAAC
AACTTGAGGAACTCCCGTGACCGGCTAGGCGGCCTGCACGAGAAGATCTC
GAAGCAGGCCCTCGACTGCCGCGGCGCCCAGCATCTCCTCGAGGACGATG
TGTCGCACAAGGAGTCCTCGCTCGGCATCGACTCCATGTGCCACCAGCTG
AACAACCACAGCCGCGGCATCACCTACTACGGCGGCATCGAGAAGTTCGA
TCCCTCGGTCAGCACCCAGGAGTCCTGGGCGCAGGCCAGCAGCGAGCACG
TCCGCCGTTCCCAGGCGGAGCGCGCGAAGCTTTCCCAGCTGCGGAGCGAT
GCCCAGAGTGTGGTCAACTCGGTGGCCACCACCGTGTGGGACTTCTGGAG
CAACACGAACAACGCCTTCGATCGCCGCTCGCAGGAGATGGCCGAGGCGA
AGAACCGGGTGCAGCTGCACCTTCAGAAGGTCCAACAGGAGCTGTTCGAC
ATGGAGAAGCATCTCTTCCTCCTGCAGAAGGCCATCCAGGACAAGTCCGG
GCCGTTGAAAGTGGCCCAGACGCGGCTGGAGGCCCGCTCCCACCGCGAGG
GCGTCGAGCTGTGCAAGGACCACGCCCAGGACCGCCTTGTCCAGGAGGTG
CAGGACATCCAGGGTGCAGTGGAGACGCTGCACCACAAGCTGATGGAGGC
GGAGGCCACCCATCAGGGCCTACTAAAGACGCGCTGCACCCTGGAGGTGG
ATCTGCGCAACAAAGTCAATGCCCTGTTCATCGACCGAGAGAAGTGCATG
AGTCTCCGGCGCTCCTTCCCGGTCAGCAATCTGATCAAGTACTGATCCGT
ATCCGTAACTGCACGCCGGTCTCTGGACTCCGCACTCCCACTCGCTTTTT
CCGCCACCAGTTTTCCTGACATGTCATTTGTGTGTGTACCATCAAGAGAT
AAACTGCAGATTGCATTTGTTGAAAAAAAAAAAAAAAAA

GH11003.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17450-RA 1927 CG17450-RA 13..1838 1..1826 9130 100 Plus
CG32820-RB 2036 CG32820-RB 13..1799 1..1787 8830 99.6 Plus
CG32819-RB 2034 CG32819-RB 17..1803 1..1787 8830 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21471126..21471791 1822..1157 3330 100 Minus
chrX 22417052 chrX 21477256..21477886 1787..1157 3050 98.9 Minus
chrX 22417052 chrX 21483348..21483978 1787..1157 3050 98.9 Minus
chrX 22417052 chrX 21471954..21472542 1157..569 2945 100 Minus
chrX 22417052 chrX 21478046..21478634 1157..569 2945 100 Minus
chrX 22417052 chrX 21484138..21484726 1157..569 2945 100 Minus
chrX 22417052 chrX 21472665..21473233 569..1 2845 100 Minus
chrX 22417052 chrX 21478757..21479325 569..1 2845 100 Minus
chrX 22417052 chrX 21484849..21485417 569..1 2845 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21605964..21606633 1826..1157 3350 100 Minus
X 23542271 X 21612098..21612728 1787..1157 3050 98.9 Minus
X 23542271 X 21618190..21618820 1787..1157 3050 98.9 Minus
X 23542271 X 21606796..21607384 1157..569 2945 100 Minus
X 23542271 X 21612888..21613476 1157..569 2945 100 Minus
X 23542271 X 21618980..21619568 1157..569 2945 100 Minus
X 23542271 X 21607507..21608075 569..1 2845 100 Minus
X 23542271 X 21613599..21614167 569..1 2845 100 Minus
X 23542271 X 21619691..21620259 569..1 2845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21591056..21591725 1826..1157 3350 100 Minus
X 23527363 X 21603282..21603912 1787..1157 3050 98.8 Minus
X 23527363 X 21597190..21597820 1787..1157 3050 98.8 Minus
X 23527363 X 21604072..21604660 1157..569 2945 100 Minus
X 23527363 X 21597980..21598568 1157..569 2945 100 Minus
X 23527363 X 21591888..21592476 1157..569 2945 100 Minus
X 23527363 X 21604783..21605351 569..1 2845 100 Minus
X 23527363 X 21598691..21599259 569..1 2845 100 Minus
X 23527363 X 21592599..21593167 569..1 2845 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:59:39 has no hits.

GH11003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:00:27 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21471126..21471790 1158..1822 100 <- Minus
chrX 21471954..21472541 570..1157 100 <- Minus
chrX 21472665..21473233 1..569 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:36 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG17450-RA 1..1563 133..1695 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:38:59 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG17450-RA 1..1563 133..1695 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:00:04 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG17450-RA 1..1563 133..1695 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:19:08 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG17450-RA 1..1563 133..1695 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-09 13:14:04 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG32819-RB 13..1799 1..1787 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:38:59 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG32819-RB 13..1799 1..1787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:00:04 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG17450-RA 17..1838 1..1822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:19:08 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
CG17450-RA 17..1838 1..1822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:27 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
X 21605968..21606632 1158..1822 100 <- Minus
X 21606796..21607383 570..1157 100 <- Minus
X 21607507..21608075 1..569 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:27 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
X 21605968..21606632 1158..1822 100 <- Minus
X 21606796..21607383 570..1157 100 <- Minus
X 21607507..21608075 1..569 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:27 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
X 21605968..21606632 1158..1822 100 <- Minus
X 21606796..21607383 570..1157 100 <- Minus
X 21607507..21608075 1..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:00:04 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21476995..21477659 1158..1822 100 <- Minus
arm_X 21477823..21478410 570..1157 100 <- Minus
arm_X 21478534..21479102 1..569 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:12:59 Download gff for GH11003.complete
Subject Subject Range Query Range Percent Splice Strand
X 21591060..21591724 1158..1822 100 <- Minus
X 21591888..21592475 570..1157 100 <- Minus
X 21592599..21593167 1..569 100   Minus

GH11003.pep Sequence

Translation from 132 to 1694

> GH11003.pep
MSHNGAGLGAGSGGSPIPPTTVMYSQLQPWSQAGAPPCMEPVMGPSIPPR
VGAAYETPTKHPWRPAMAYELIQVKHMPEQPVTNQLTKQCFLPKGMKTDG
MIFPNLVTGFDRNPQHAARAALYTRYTSNEWYNNNMTKYSESNMNRNLSE
RMRNDAVRLMRETDEKATSGQRDAGRRLGERITDLTFWRNELNAELEKLI
AEMSDINELQRQCGKALLDLEIPLHIAQECLFHRESRQGTEKVHDIVEKA
LLVEINNLRNSRDRLGGLHEKISKQALDCRGAQHLLEDDVSHKESSLGID
SMCHQLNNHSRGITYYGGIEKFDPSVSTQESWAQASSEHVRRSQAERAKL
SQLRSDAQSVVNSVATTVWDFWSNTNNAFDRRSQEMAEAKNRVQLHLQKV
QQELFDMEKHLFLLQKAIQDKSGPLKVAQTRLEARSHREGVELCKDHAQD
RLVQEVQDIQGAVETLHHKLMEAEATHQGLLKTRCTLEVDLRNKVNALFI
DREKCMSLRRSFPVSNLIKY*

GH11003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20933-PA 604 GF20933-PA 113..604 29..520 2590 96.3 Plus
Dana\GF14924-PA 583 GF14924-PA 184..578 124..518 426 30.4 Plus
Dana\GF10443-PA 421 GF10443-PA 1..417 102..513 320 25.7 Plus
Dana\GF13562-PA 433 GF13562-PA 22..391 139..501 215 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17527-PA 601 GG17527-PA 110..601 29..520 2651 99.4 Plus
Dere\GG17913-PA 585 GG17913-PA 185..579 124..518 416 29.4 Plus
Dere\GG25176-PA 585 GG25176-PA 185..579 124..518 415 29.4 Plus
Dere\GG14110-PA 421 GG14110-PA 1..417 102..513 320 25.7 Plus
Dere\GG22824-PA 432 GG22824-PA 22..391 139..501 222 24.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24869-PA 595 GH24869-PA 104..595 29..520 2273 82.1 Plus
Dgri\GH10383-PA 585 GH10383-PA 185..579 124..518 401 28.6 Plus
Dgri\GH22217-PA 421 GH22217-PA 1..421 102..517 329 25.6 Plus
Dgri\GH17037-PA 421 GH17037-PA 1..421 102..517 329 25.6 Plus
Dgri\GH22718-PA 433 GH22718-PA 29..391 146..501 227 23.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32820-PB 520 CG32820-PB 1..520 1..520 2722 100 Plus
CG17450-PC 520 CG17450-PC 1..520 1..520 2722 100 Plus
CG17450-PA 520 CG17450-PA 1..520 1..520 2722 100 Plus
CG32819-PB 520 CG32819-PB 1..520 1..520 2722 100 Plus
CG32820-PA 601 CG32820-PA 110..601 29..520 2574 100 Plus
CG17450-PB 601 CG17450-PB 110..601 29..520 2574 100 Plus
CG32819-PA 601 CG32819-PA 110..601 29..520 2574 100 Plus
Tektin-A-PB 585 CG4767-PB 185..579 124..518 433 29.4 Plus
Tektin-A-PA 585 CG4767-PA 185..579 124..518 433 29.4 Plus
Tektin-C-PD 421 CG10541-PD 29..415 125..511 375 26.2 Plus
Tektin-C-PC 421 CG10541-PC 29..415 125..511 375 26.2 Plus
Tektin-C-PA 421 CG10541-PA 29..415 125..511 375 26.2 Plus
CG3085-PB 432 CG3085-PB 22..391 139..501 282 23.9 Plus
CG3085-PA 432 CG3085-PA 22..391 139..501 282 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14700-PA 596 GI14700-PA 105..596 29..520 2272 82.5 Plus
Dmoj\GI17364-PA 586 GI17364-PA 186..580 124..518 420 29.1 Plus
Dmoj\GI12041-PA 421 GI12041-PA 1..421 102..517 331 25.6 Plus
Dmoj\GI18504-PA 433 GI18504-PA 42..391 152..501 241 25.4 Plus
Dmoj\GI18503-PA 433 GI18503-PA 63..401 173..512 179 23.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13433-PA 252 GL13433-PA 1..250 203..479 922 71.5 Plus
Dper\GL15298-PA 586 GL15298-PA 186..580 124..518 431 29.9 Plus
Dper\GL21420-PA 421 GL21420-PA 1..417 102..513 332 26.6 Plus
Dper\GL10775-PA 433 GL10775-PA 29..391 146..501 220 23.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22889-PA 488 GA22889-PA 80..488 129..520 1828 85.8 Plus
Dpse\GA18416-PA 586 GA18416-PA 186..580 124..518 431 29.9 Plus
Dpse\GA10385-PA 421 GA10385-PA 1..417 102..513 332 26.6 Plus
Dpse\GA15915-PA 433 GA15915-PA 29..391 146..501 220 23.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13535-PA 589 GM13535-PA 98..589 15..520 2568 94.9 Plus
Dsec\GM22611-PA 130 GM22611-PA 1..130 391..520 685 99.2 Plus
Dsec\GM18638-PA 585 GM18638-PA 185..579 124..518 414 29.4 Plus
Dsec\GM13895-PA 421 GM13895-PA 1..417 102..513 320 25.7 Plus
Dsec\GM15983-PA 432 GM15983-PA 68..391 178..501 203 24.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15491-PA 605 GD15491-PA 100..605 15..520 2668 97.8 Plus
Dsim\GD24023-PA 385 GD24023-PA 49..379 188..518 379 31.4 Plus
Dsim\GD17596-PA 421 GD17596-PA 1..417 102..513 318 25.5 Plus
Dsim\GD11736-PA 432 GD11736-PA 68..391 178..501 205 24.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17002-PA 596 GJ17002-PA 105..596 29..520 2252 82.1 Plus
Dvir\GJ18038-PA 586 GJ18038-PA 186..580 124..518 429 29.6 Plus
Dvir\GJ13311-PA 421 GJ13311-PA 1..421 102..517 333 25.6 Plus
Dvir\GJ21366-PA 433 GJ21366-PA 29..391 146..501 229 25 Plus
Dvir\GJ21365-PA 433 GJ21365-PA 42..404 152..515 222 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25605-PA 607 GK25605-PA 116..607 29..520 2485 91.7 Plus
Dwil\GK24269-PA 582 GK24269-PA 182..576 124..518 414 29.1 Plus
Dwil\GK17535-PA 421 GK17535-PA 1..417 102..513 329 26.4 Plus
Dwil\GK19550-PA 433 GK19550-PA 22..391 139..501 197 23.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15287-PA 601 GE15287-PA 110..601 29..520 2645 99.2 Plus
Dyak\GE21166-PA 585 GE21166-PA 185..579 124..518 416 29.4 Plus
Dyak\GE20534-PA 421 GE20534-PA 1..417 102..513 320 25.7 Plus
Dyak\GE14259-PA 432 GE14259-PA 22..391 139..501 219 24.7 Plus

GH11003.hyp Sequence

Translation from 132 to 1694

> GH11003.hyp
MSHNGAGLGAGSGGSPIPPTTVMYSQLQPWSQAGAPPCMEPVMGPSIPPR
VGAAYETPTKHPWRPAMAYELIQVKHMPEQPVTNQLTKQCFLPKGMKTDG
MIFPNLVTGFDRNPQHAARAALYTRYTSNEWYNNNMTKYSESNMNRNLSE
RMRNDAVRLMRETDEKATSGQRDAGRRLGERITDLTFWRNELNAELEKLI
AEMSDINELQRQCGKALLDLEIPLHIAQECLFHRESRQGTEKVHDIVEKA
LLVEINNLRNSRDRLGGLHEKISKQALDCRGAQHLLEDDVSHKESSLGID
SMCHQLNNHSRGITYYGGIEKFDPSVSTQESWAQASSEHVRRSQAERAKL
SQLRSDAQSVVNSVATTVWDFWSNTNNAFDRRSQEMAEAKNRVQLHLQKV
QQELFDMEKHLFLLQKAIQDKSGPLKVAQTRLEARSHREGVELCKDHAQD
RLVQEVQDIQGAVETLHHKLMEAEATHQGLLKTRCTLEVDLRNKVNALFI
DREKCMSLRRSFPVSNLIKY*

GH11003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32820-PB 520 CG32820-PB 1..520 1..520 2722 100 Plus
CG32819-PB 520 CG32819-PB 1..520 1..520 2722 100 Plus
CG17450-PC 520 CG17450-PC 1..520 1..520 2722 100 Plus
CG17450-PA 520 CG17450-PA 1..520 1..520 2722 100 Plus
CG32820-PA 601 CG32820-PA 110..601 29..520 2574 100 Plus