Clone GH11008 Report

Search the DGRC for GH11008

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:8
Vector:pOT2
Associated Gene/TranscriptMip-RA
Protein status:GH11008.pep: gold
Preliminary Size:1300
Sequenced Size:1403

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6456 2001-01-01 Release 2 assignment
CG6456 2002-05-31 Blastp of sequenced clone
CG6456 2003-01-01 Sim4 clustering to Release 3
Mip 2008-04-29 Release 5.5 accounting
Mip 2008-08-15 Release 5.9 accounting
Mip 2008-12-18 5.12 accounting

Clone Sequence Records

GH11008.complete Sequence

1403 bp (1403 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118306

> GH11008.complete
TTGATCAACAGGTTTGCGCACAGCCAACAGCCAGGACAGGACATCCAGTT
GCCACGCTCCTCGAAATCTGTTTCACACCGGTCAAGTGAGAGCGCTATAA
TTGAATTGCACTCGTGCCCGTAAATTCACTTAAAAACGCTATTTCATGTC
GAAAAAAATTCTATAAAAGAGTGCGCAGCAAACCCGAAATAAAATTGTAA
AACGCTGGCCACAGTTTCCGCTGGCCTCAATAATAATTCGTACGCTAAAA
TCGCGAGGAGATATATAGTCAGCTATGGCTCACACTAAGACGCGGAGAAC
TTACGGCTTTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATT
TGGTGGCCAGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGC
GGAGGCCTGTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCT
GTACGGCAACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCA
AGCGGTCCTCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGC
CACTTTGTTCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGA
CACCTTCGAGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAAC
AGCCGCTCCAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCA
GGCGAGCCGGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTG
GGGAAAGAGGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGG
GTAAGCGCGAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGC
GACCAGTGGCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCC
CAGCAACTAATCTCGCAGAGAATCGCCGTAGCACAGGAAAACTTAACCAG
ACTAACTAATCCACCTGTATCTAACCGTATATAGCATGTGTGTTTCCTCC
GCGATGGGTTTCCGTTCTTAGTGTCCATGTCGCACTAGGTTGTCCGGAGT
TTCTCCCGGTCCCGTGCCACTGAAAGTCAATTCCGAAAATGTATGAAAGC
GCTCGCCAGTCACCGGATCCTGATGACCGGCGATCCGTATCGCCGCCTCG
ATCATCCAGTATTATACGCATTACATACATATATGTCGGTATGTCTAGTC
AACTATGTATCTACTCTAGCACCTAGTCTCCACGTATACAAGAGGAACTT
TCGGAAGAATATCGCTTTAATTTAGAAACGTTAACTAAGTTAATGAATTG
TGCATATATCTTTATACTTAAATATACATCAATACATACCAAATGGCAAC
TATTAATACGAAATACAAATACGTTGAAAGTAAAAAAAAAAAAAAAAAAA
AAA

GH11008.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1407 Mip-RA 27..1407 1..1381 6905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17334397..17335508 1381..270 5485 99.6 Minus
chr3L 24539361 chr3L 17338829..17339100 272..1 1360 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17344946..17346058 1382..270 5565 100 Minus
3L 28110227 3L 17349380..17349651 272..1 1360 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17338046..17339158 1382..270 5565 100 Minus
3L 28103327 3L 17342480..17342751 272..1 1360 100 Minus
Blast to na_te.dros performed 2019-03-16 03:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 589..666 131 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 625..666 128 83.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 634..667 125 85.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 634..672 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 634..666 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 634..666 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 634..666 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 635..672 118 78.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6289..6473 1163..1344 118 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 634..667 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 635..666 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 635..673 114 76.9 Plus
roo 9092 roo DM_ROO 9092bp 1081..1119 634..672 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 634..666 111 81.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 634..666 111 81.8 Plus

GH11008.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:43:24 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17338829..17339100 1..272 100   Minus
chr3L 17334397..17335505 273..1381 96 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:35 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 1..636 275..910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:56 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 1..636 275..910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:34 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 1..636 275..910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:26:33 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:48 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 1..636 275..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:06:18 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 12..1392 1..1381 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:56 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 12..1392 1..1381 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:34 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 16..1396 1..1381 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:33 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 12..1392 1..1381 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:48 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 16..1396 1..1381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:24 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17344947..17346055 273..1381 100 <- Minus
3L 17349380..17349651 1..272 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:24 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17344947..17346055 273..1381 100 <- Minus
3L 17349380..17349651 1..272 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:24 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17344947..17346055 273..1381 100 <- Minus
3L 17349380..17349651 1..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:34 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338047..17339155 273..1381 100 <- Minus
arm_3L 17342480..17342751 1..272 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:59 Download gff for GH11008.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17338047..17339155 273..1381 100 <- Minus
3L 17342480..17342751 1..272 100   Minus

GH11008.hyp Sequence

Translation from 274 to 909

> GH11008.hyp
MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV
LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT
DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR
AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG
GWGKRSQLPSN*

GH11008.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-PA 211 CG6456-PA 1..211 1..211 1148 100 Plus

GH11008.pep Sequence

Translation from 274 to 909

> GH11008.pep
MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV
LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT
DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR
AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG
GWGKRSQLPSN*

GH11008.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24317-PA 207 GF24317-PA 1..201 1..206 677 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15820-PA 215 GG15820-PA 1..215 1..211 930 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14915-PA 210 GH14915-PA 16..207 14..206 597 69 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-PA 211 CG6456-PA 1..211 1..211 1148 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12893-PA 214 GI12893-PA 32..211 27..206 594 72.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15492-PA 211 GL15492-PA 1..207 1..206 655 70.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19609-PA 211 GA19609-PA 1..207 1..206 646 69.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24340-PA 213 GM24340-PA 1..213 1..211 1067 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12414-PA 213 GD12414-PA 1..213 1..211 1067 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13034-PA 209 GJ13034-PA 23..206 23..206 609 69.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20345-PA 209 GK20345-PA 7..208 11..208 624 66.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22160-PA 210 GE22160-PA 1..210 1..211 886 92.4 Plus