BDGP Sequence Production Resources |
Search the DGRC for GH11008
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 110 |
Well: | 8 |
Vector: | pOT2 |
Associated Gene/Transcript | Mip-RA |
Protein status: | GH11008.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1403 |
Gene | Date | Evidence |
---|---|---|
CG6456 | 2001-01-01 | Release 2 assignment |
CG6456 | 2002-05-31 | Blastp of sequenced clone |
CG6456 | 2003-01-01 | Sim4 clustering to Release 3 |
Mip | 2008-04-29 | Release 5.5 accounting |
Mip | 2008-08-15 | Release 5.9 accounting |
Mip | 2008-12-18 | 5.12 accounting |
1403 bp (1403 high quality bases) assembled on 2002-05-31
GenBank Submission: AY118306
> GH11008.complete TTGATCAACAGGTTTGCGCACAGCCAACAGCCAGGACAGGACATCCAGTT GCCACGCTCCTCGAAATCTGTTTCACACCGGTCAAGTGAGAGCGCTATAA TTGAATTGCACTCGTGCCCGTAAATTCACTTAAAAACGCTATTTCATGTC GAAAAAAATTCTATAAAAGAGTGCGCAGCAAACCCGAAATAAAATTGTAA AACGCTGGCCACAGTTTCCGCTGGCCTCAATAATAATTCGTACGCTAAAA TCGCGAGGAGATATATAGTCAGCTATGGCTCACACTAAGACGCGGAGAAC TTACGGCTTTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATT TGGTGGCCAGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGC GGAGGCCTGTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCT GTACGGCAACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCA AGCGGTCCTCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGC CACTTTGTTCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGA CACCTTCGAGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAAC AGCCGCTCCAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCA GGCGAGCCGGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTG GGGAAAGAGGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGG GTAAGCGCGAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGC GACCAGTGGCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCC CAGCAACTAATCTCGCAGAGAATCGCCGTAGCACAGGAAAACTTAACCAG ACTAACTAATCCACCTGTATCTAACCGTATATAGCATGTGTGTTTCCTCC GCGATGGGTTTCCGTTCTTAGTGTCCATGTCGCACTAGGTTGTCCGGAGT TTCTCCCGGTCCCGTGCCACTGAAAGTCAATTCCGAAAATGTATGAAAGC GCTCGCCAGTCACCGGATCCTGATGACCGGCGATCCGTATCGCCGCCTCG ATCATCCAGTATTATACGCATTACATACATATATGTCGGTATGTCTAGTC AACTATGTATCTACTCTAGCACCTAGTCTCCACGTATACAAGAGGAACTT TCGGAAGAATATCGCTTTAATTTAGAAACGTTAACTAAGTTAATGAATTG TGCATATATCTTTATACTTAAATATACATCAATACATACCAAATGGCAAC TATTAATACGAAATACAAATACGTTGAAAGTAAAAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mip-RA | 1407 | Mip-RA | 27..1407 | 1..1381 | 6905 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 589..666 | 131 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 625..666 | 128 | 83.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 634..667 | 125 | 85.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 634..672 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 634..666 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 634..666 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 634..666 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 635..672 | 118 | 78.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 6289..6473 | 1163..1344 | 118 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 634..667 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 635..666 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 635..673 | 114 | 76.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 634..672 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 634..666 | 111 | 81.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 634..666 | 111 | 81.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17338829..17339100 | 1..272 | 100 | Minus | |
chr3L | 17334397..17335505 | 273..1381 | 96 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 1..636 | 275..910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 1..636 | 275..910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 1..636 | 275..910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 1..636 | 275..910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 12..1392 | 1..1381 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 12..1392 | 1..1381 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 16..1396 | 1..1381 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 12..1392 | 1..1381 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mip-RA | 16..1396 | 1..1381 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17344947..17346055 | 273..1381 | 100 | <- | Minus |
3L | 17349380..17349651 | 1..272 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17344947..17346055 | 273..1381 | 100 | <- | Minus |
3L | 17349380..17349651 | 1..272 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17344947..17346055 | 273..1381 | 100 | <- | Minus |
3L | 17349380..17349651 | 1..272 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17338047..17339155 | 273..1381 | 100 | <- | Minus |
arm_3L | 17342480..17342751 | 1..272 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17338047..17339155 | 273..1381 | 100 | <- | Minus |
3L | 17342480..17342751 | 1..272 | 100 | Minus |
Translation from 274 to 909
> GH11008.hyp MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG GWGKRSQLPSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mip-PA | 211 | CG6456-PA | 1..211 | 1..211 | 1148 | 100 | Plus |
Translation from 274 to 909
> GH11008.pep MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG GWGKRSQLPSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24317-PA | 207 | GF24317-PA | 1..201 | 1..206 | 677 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15820-PA | 215 | GG15820-PA | 1..215 | 1..211 | 930 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14915-PA | 210 | GH14915-PA | 16..207 | 14..206 | 597 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mip-PA | 211 | CG6456-PA | 1..211 | 1..211 | 1148 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12893-PA | 214 | GI12893-PA | 32..211 | 27..206 | 594 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15492-PA | 211 | GL15492-PA | 1..207 | 1..206 | 655 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19609-PA | 211 | GA19609-PA | 1..207 | 1..206 | 646 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24340-PA | 213 | GM24340-PA | 1..213 | 1..211 | 1067 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12414-PA | 213 | GD12414-PA | 1..213 | 1..211 | 1067 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13034-PA | 209 | GJ13034-PA | 23..206 | 23..206 | 609 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20345-PA | 209 | GK20345-PA | 7..208 | 11..208 | 624 | 66.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22160-PA | 210 | GE22160-PA | 1..210 | 1..211 | 886 | 92.4 | Plus |