Clone GH11023 Report

Search the DGRC for GH11023

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:23
Vector:pOT2
Associated Gene/TranscriptCG7927-RA
Protein status:GH11023.pep: gold
Preliminary Size:2488
Sequenced Size:2511

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7927 2000-02-14 Blastp of sequenced clone
CG7927 2001-01-01 Release 2 assignment
CG7927 2003-01-01 Sim4 clustering to Release 3
CG7927 2008-04-29 Release 5.5 accounting
CG7927 2008-08-15 Release 5.9 accounting
CG7927 2008-12-18 5.12 accounting

Clone Sequence Records

GH11023.complete Sequence

2511 bp (2511 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145663

> GH11023.complete
CAAGGCGTATAGGTGTATAGCACTTGCTAAAATTTAGAACTTCTTTTTCA
ATTCCCGCCAAGACGGGACCACCTGTCTAGGCCAGTGCTGTGAAGCGCGC
GTGGCCACAGAGCTCGGCAACCCTGCAGCCGTGCGAAAGCGAATGTGGTG
AAGAAAAAAAAAACAGCGAAATACACACGTATTTTGCGACGAAATTAAAT
AGAATTCCTGCTAAGGGGTATAAGGACACTTGAAGGATGTCTGCGCGAAT
GCTGAAGAAGCTGCAGGGCGACGCTGACAAGCTGGCGCCACCGCCCGATG
ACGAGGACTGCGAGGAGCTGAGCGACAATGATGAACTGGAGGACAGCGAT
ATGCAACGCTATCGAAAATCACACCTTAATCCATTCGATTTGCTCAATCA
AGCCGGTTTGAGTCTCTCGGAGAGTGAGTTCAAAGAAGATGACAATGAAA
CGGAGCATCCGTCTGCTGCCCTGCCCAATGCTACTGCCAGTGCGGCCAAA
AAGAAGAAAAAGAAGCGCAAGAAGAAGGCCAAGTCCAGTGGGAATCACAT
CAGCAGCGAAGATAACGAGCGTCAGGATAAGTACTTTGAGAAGGTGGATC
CGCTCCTTGGCAAGGTCTACGATGCGGTGCCCAGACAGTCGGCGAAACAG
TTGGTATCGGCTGCCACCGGGACTACTGCCACCAAGAAACTGCTGGCCGT
AGAGCTACGGCACCTGAATCCACAGAACGAGATGCGTCGCACTTTTGGCA
AGCGGGTGGTAAAAGTGGAAACCAAGCGTGGCAGGCAGAAGCCCACGCTG
AAGTCCACCTATATGGTGACCGCCAAGGATTCGTGGCCGGCACTGACTAA
AAACACCATCACGATGAAGCTGCTGCCCGCCCCAGACTCTCCATCGGTGT
CCTCCAAGTCTATCACAGATAATGGAGCGGACGTTCAATGGTTTGCCTTT
GAGCATAGCCAATACTACCAGGGAGTGCAGCAAATGTTCCTTTCTGCTCT
CGAGCGCATTGACTCGGAATTTCTGATCACACTTATCAAACGCTGCCCCT
ATCATGTCGACTCCTTGGTTCAACTCAGCGAAGTATGCAAGATGACCGAA
GACTTTTCCTTGGCCTCCGAACTGCTTGAGCGCGCCCTTCTCCTTCTGGA
ATCGTCGCTGCACATCAACTTCAGTTTGACGTCGGGCAACTGCCGACTGG
ACTACCGGAGACAGGAAAACCGATCCTTCTACATCGTGCTGTTCAAGCAC
GCGCAGTACCTGGAGGAACGAGCTTGCAGCCGCACCGCCTTCGAGATCTC
CAAACTGCTCCTGAGTCTTCAGCCAGACACAGATCCTCTTGCCATGATTC
TAGTGATTGACTACTATGCCTTGCGCAGCAAGCAGTTTGAATGGTTGGTA
GAGTTCTATGAAAAGTATAACGCCGCGAGGAACCTCAATCAGCTGCCCAA
TATGGCCTACTCGTATGCTTTGGCTCTACACACGCTCTATGGCGCTTGTG
AACGCTCTAACCAGGCACTGCAATACGCCCTACTAATGTTCCCGGGTGTT
TTACGTCCTCTTTTGGACGAGATGTCGGTGCAAACGGACAAGAGGGTCCT
GGCCTCATCGTACTTCTTTGCAGATGTGTCGGGCAATCAATCGCCCGCCC
TGCACCAGCTGGTGTGCCTGTATGTGTGCCGTGCAAGAGTCGTTTGGCGT
CAGAACGAGGTGCTACCCTGGTTGGAATCCAACGTGAACATAGTGTTAGA
TCGCATTGAGAGTAAGGATCCCCTGGTTAATGAGTACAAGGAGAAGCGAT
CACTGCGATATAGTGGAACACCACCAAGGCCCATTCTTCGACATGTCATA
CTCTCCGATTACAAGGAGAAAGTTCCACTGGCGGTCTTCGTGTCCAAGGA
GAAGCAAGCCATTATGACCTATGATCCACTGCCGCCACCGAACAGCGTCA
ACTGCTATCATCGAAAATCTTCGTCAAGCAGCAGCCCCACAACGAACACG
AACAATTCTGTGTCAATGTTCTTTCAATCGCTCTTGCCTTCGTTTAACAT
TAACAACCTAGCTGCAAATGCTCAGCTACAAGAAGGAGCAGCACCAGCAG
CAGGTGCGGGAGCAGCTGCAGGCGATGCTAACATTGAAGTGGGCATTGAA
CAAGGAGCTGCCGGCGTAGCTGGCGAAGGAGAAGAAGCTGGTTTGCAGCA
GTCATTAACGCTAATGATGGACGCGATGCGAGACTTCCTGCAAAACTTCC
GGATTGCAGAGCACTTGCGTTCGCCGGAAACGGCGGCGGCACAATCCACG
AGCAGCAACGACGAGGAGGAGGGCTCCAGTGACTACATTGACTAGTCAGT
TTGTCAATTACGCGAGGCGTAACGAAGTTGTTTCGGATTTCTAGCTCGGG
ACATGTTTTTTGGAAACCACCTTTTGCTATTTTCTCAGCTTAGCGACACC
GTCACAAAATTTATATATACAATACATAGAGCAATTTGAACACAAAAAAA
AAAAAAAAAAA

GH11023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-RA 2614 CG7927-RA 64..2563 1..2500 12500 100 Plus
CG7927.b 2507 CG7927.b 11..2507 1..2500 12430 99.8 Plus
CG7927.a 2477 CG7927.a 64..2248 1..2185 10925 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8103226..8104092 770..1636 4305 99.8 Plus
chr3L 24539361 chr3L 8102311..8102702 1..392 1960 100 Plus
chr3L 24539361 chr3L 8102777..8103154 392..769 1890 100 Plus
chr3L 24539361 chr3L 8104160..8104483 1637..1960 1620 100 Plus
chr3L 24539361 chr3L 8105058..8105368 2183..2493 1555 100 Plus
chr3L 24539361 chr3L 8104541..8104762 1963..2184 1080 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8111178..8112044 770..1636 4335 100 Plus
3L 28110227 3L 8110263..8110654 1..392 1960 100 Plus
3L 28110227 3L 8110729..8111106 392..769 1890 100 Plus
3L 28110227 3L 8112112..8112438 1637..1963 1635 100 Plus
3L 28110227 3L 8113010..8113327 2183..2500 1590 100 Plus
3L 28110227 3L 8112493..8112714 1963..2184 1110 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8104278..8105144 770..1636 4335 100 Plus
3L 28103327 3L 8103363..8103754 1..392 1960 100 Plus
3L 28103327 3L 8103829..8104206 392..769 1890 100 Plus
3L 28103327 3L 8105212..8105538 1637..1963 1635 100 Plus
3L 28103327 3L 8106110..8106427 2183..2500 1590 100 Plus
3L 28103327 3L 8105593..8105814 1963..2184 1110 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:55:22 has no hits.

GH11023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:56:15 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8102311..8102702 1..392 100 -> Plus
chr3L 8102778..8103154 393..769 100 -> Plus
chr3L 8103226..8104092 770..1636 99 -> Plus
chr3L 8104160..8104486 1637..1963 99 -> Plus
chr3L 8104542..8104762 1964..2184 99 -> Plus
chr3L 8105060..8105368 2185..2493 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:37 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2109 237..2345 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:49 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2109 237..2345 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:25 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2109 237..2345 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:15 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2109 237..2345 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:16 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2109 237..2345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:34:46 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2493 1..2493 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:49 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2493 1..2493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:25 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2388 106..2493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:15 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2493 1..2493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:16 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1..2388 106..2493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:15 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8110263..8110654 1..392 100 -> Plus
3L 8110730..8111106 393..769 100 -> Plus
3L 8111178..8112044 770..1636 100 -> Plus
3L 8112112..8112438 1637..1963 100 -> Plus
3L 8112494..8112714 1964..2184 100 -> Plus
3L 8113012..8113320 2185..2493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:15 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8110263..8110654 1..392 100 -> Plus
3L 8110730..8111106 393..769 100 -> Plus
3L 8111178..8112044 770..1636 100 -> Plus
3L 8112112..8112438 1637..1963 100 -> Plus
3L 8112494..8112714 1964..2184 100 -> Plus
3L 8113012..8113320 2185..2493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:15 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8110263..8110654 1..392 100 -> Plus
3L 8110730..8111106 393..769 100 -> Plus
3L 8111178..8112044 770..1636 100 -> Plus
3L 8112112..8112438 1637..1963 100 -> Plus
3L 8112494..8112714 1964..2184 100 -> Plus
3L 8113012..8113320 2185..2493 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:25 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8103363..8103754 1..392 100 -> Plus
arm_3L 8103830..8104206 393..769 100 -> Plus
arm_3L 8104278..8105144 770..1636 100 -> Plus
arm_3L 8105212..8105538 1637..1963 100 -> Plus
arm_3L 8105594..8105814 1964..2184 100 -> Plus
arm_3L 8106112..8106420 2185..2493 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:44:50 Download gff for GH11023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8103363..8103754 1..392 100 -> Plus
3L 8103830..8104206 393..769 100 -> Plus
3L 8104278..8105144 770..1636 100 -> Plus
3L 8105212..8105538 1637..1963 100 -> Plus
3L 8105594..8105814 1964..2184 100 -> Plus
3L 8106112..8106420 2185..2493 100   Plus

GH11023.pep Sequence

Translation from 236 to 2344

> GH11023.pep
MSARMLKKLQGDADKLAPPPDDEDCEELSDNDELEDSDMQRYRKSHLNPF
DLLNQAGLSLSESEFKEDDNETEHPSAALPNATASAAKKKKKKRKKKAKS
SGNHISSEDNERQDKYFEKVDPLLGKVYDAVPRQSAKQLVSAATGTTATK
KLLAVELRHLNPQNEMRRTFGKRVVKVETKRGRQKPTLKSTYMVTAKDSW
PALTKNTITMKLLPAPDSPSVSSKSITDNGADVQWFAFEHSQYYQGVQQM
FLSALERIDSEFLITLIKRCPYHVDSLVQLSEVCKMTEDFSLASELLERA
LLLLESSLHINFSLTSGNCRLDYRRQENRSFYIVLFKHAQYLEERACSRT
AFEISKLLLSLQPDTDPLAMILVIDYYALRSKQFEWLVEFYEKYNAARNL
NQLPNMAYSYALALHTLYGACERSNQALQYALLMFPGVLRPLLDEMSVQT
DKRVLASSYFFADVSGNQSPALHQLVCLYVCRARVVWRQNEVLPWLESNV
NIVLDRIESKDPLVNEYKEKRSLRYSGTPPRPILRHVILSDYKEKVPLAV
FVSKEKQAIMTYDPLPPPNSVNCYHRKSSSSSSPTTNTNNSVSMFFQSLL
PSFNINNLAANAQLQEGAAPAAGAGAAAGDANIEVGIEQGAAGVAGEGEE
AGLQQSLTLMMDAMRDFLQNFRIAEHLRSPETAAAQSTSSNDEEEGSSDY
ID*

GH11023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23957-PA 697 GF23957-PA 1..697 1..702 2903 85.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14469-PA 705 GG14469-PA 1..705 1..702 3311 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16169-PA 704 GH16169-PA 1..704 1..702 2739 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Nulp1-PC 702 CG7927-PC 1..702 1..702 3588 100 Plus
Nulp1-PA 702 CG7927-PA 1..702 1..702 3588 100 Plus
Nulp1-PB 653 CG7927-PB 1..650 1..650 3330 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13321-PA 700 GI13321-PA 1..700 1..702 2780 80.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22607-PA 704 GL22607-PA 1..704 1..702 2773 83.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20695-PA 701 GA20695-PA 1..701 1..702 2772 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25019-PA 703 GM25019-PA 1..703 1..702 3704 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14052-PA 703 GD14052-PA 1..703 1..702 3721 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12091-PA 694 GJ12091-PA 1..694 1..702 2764 79.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19956-PA 717 GK19956-PA 1..701 1..683 2305 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21657-PA 706 GE21657-PA 1..706 1..702 3625 96.3 Plus

GH11023.hyp Sequence

Translation from 236 to 2344

> GH11023.hyp
MSARMLKKLQGDADKLAPPPDDEDCEELSDNDELEDSDMQRYRKSHLNPF
DLLNQAGLSLSESEFKEDDNETEHPSAALPNATASAAKKKKKKRKKKAKS
SGNHISSEDNERQDKYFEKVDPLLGKVYDAVPRQSAKQLVSAATGTTATK
KLLAVELRHLNPQNEMRRTFGKRVVKVETKRGRQKPTLKSTYMVTAKDSW
PALTKNTITMKLLPAPDSPSVSSKSITDNGADVQWFAFEHSQYYQGVQQM
FLSALERIDSEFLITLIKRCPYHVDSLVQLSEVCKMTEDFSLASELLERA
LLLLESSLHINFSLTSGNCRLDYRRQENRSFYIVLFKHAQYLEERACSRT
AFEISKLLLSLQPDTDPLAMILVIDYYALRSKQFEWLVEFYEKYNAARNL
NQLPNMAYSYALALHTLYGACERSNQALQYALLMFPGVLRPLLDEMSVQT
DKRVLASSYFFADVSGNQSPALHQLVCLYVCRARVVWRQNEVLPWLESNV
NIVLDRIESKDPLVNEYKEKRSLRYSGTPPRPILRHVILSDYKEKVPLAV
FVSKEKQAIMTYDPLPPPNSVNCYHRKSSSSSSPTTNTNNSVSMFFQSLL
PSFNINNLAANAQLQEGAAPAAGAGAAAGDANIEVGIEQGAAGVAGEGEE
AGLQQSLTLMMDAMRDFLQNFRIAEHLRSPETAAAQSTSSNDEEEGSSDY
ID*

GH11023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-PC 702 CG7927-PC 1..702 1..702 3588 100 Plus
CG7927-PA 702 CG7927-PA 1..702 1..702 3588 100 Plus
CG7927-PB 653 CG7927-PB 1..650 1..650 3330 100 Plus