Clone GH11067 Report

Search the DGRC for GH11067

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:67
Vector:pOT2
Associated Gene/TranscriptCG6567-RB
Protein status:GH11067.pep: gold
Preliminary Size:3700
Sequenced Size:3300

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6567 2001-01-01 Release 2 assignment
CG6567 2002-05-05 Blastp of sequenced clone
CG6567 2003-01-01 Sim4 clustering to Release 3
CG6567 2008-04-29 Release 5.5 accounting
CG6567 2008-08-15 Release 5.9 accounting
CG6567 2008-12-18 5.12 accounting

Clone Sequence Records

GH11067.complete Sequence

3300 bp (3300 high quality bases) assembled on 2002-05-05

GenBank Submission: AY102661

> GH11067.complete
CCGCCCTTTGATGGTTATTCCGATAGTGCAATATATTTAGTTGATCAAAG
GTGAATTAAAGATGAAGCCAGCCTTGACAACGGTCAATGCCACTGGCAAA
CACACAGCCTCCGTGATATTCTTCCACGGATCCGGCGACACCGGCCCCAA
TGTTCTGGAATGGGTGCGCTTCCTTATCGGCCGGAATCTGGAGTACCCGC
ACATAAAGATAATATATCCCACGGCTCCCAAACAGAAGTACACCCCGCTG
GACGGGGAACTATCCAACGTGTGGTTTGACCGCAAGTCCGTGAACATTGC
CGCATCGGAAAGCAAGAAGAGCATGTCCCAGTGTTATGATGCGGTCAATC
AGCTGATCGACGAGGAGGTGGCCAGCGGCATACCGCTGAACAGGATCGTT
GTGGGCGGATTCTCGATGGGCGGAGCCTTGGCTCTGCACACGGGCTACCA
TTTGAGACGCAGCTTGGCCGGCGTATTCGCACATTCCTCGTTCCTGAACC
GCGGCTCCGTTGTCTATGATTCCCTGGCCAACGGCAAAGACGAATCTTTT
CCCGAGCTGCGAATGTATCACGGGGAACGCGATACTCTGGTACCTAAGGA
CTGGGGTCTGGAAACCTTCGAGAACCTAACGAAACTGGGTGTCAAGGGCA
CATTTCATCCATTGAGGAACACACTGCACGAACTGAAAACTGCCTCCATC
ACGGATCTGCAGCAATGGATTTATGAAAAACTACCTCCGCTGGAAAACCA
AGTACAGAACAAACTCTGAGTGTATTTGGCATGAAACCCGTGCATTTTGA
AGCACCACAGAGGCAAGTCTTTCCACCTGTCATCTTTTTATACTGCCCTT
CTCCGCCATAATGAAAGCATAACTCCTCCTTGGCCGCAATATCCCTTGCT
GCGAAAATACCTAAAAAATTACACATGACGAGAGAAGTCGGATCAGAATT
AGCAATAAAACTTGCCTATTTTTGGTATGGGACAGTCTATTCGTACAGCT
GCTATATGACAGTTCGGTTCGCAGCTGTGGTTCAGGTAGCGTCCGATGTT
TCCACGTCTTGATGGATCAACGATGGTCACCTGTTGCTTCTTGTCGCTAG
TGTATTCATTAAGCACCAGGATATAGTTCATCAGGCCTAGTTTTTCATTA
TCATGCAAGCGGCTTCTTGCCTCGGGAACCGTTAAAAGTTCTCCGGCATA
TTCGCAAATGTATCCTCCTTTTGTAATTTTCGCTGTAGTCCGTAGTCCTT
TGGATCCGTACACGGGCGAATCGAATATTTCCAAATGTTTCCTCGGGCCT
GAGTACACAAGCCGATTGGAGCACGTGTTTCTACAGCATTTGCACATGTC
ATTGCACTCAATGACAGGATTTGCGGAATTCCGAAGAATTAATTCGCTGC
CATCTTCTGTGAACTCATATTGGCCTCCATGTGCACAGACTTCGCTGTTT
TCGCAGGCTCCTTTGCAGTGACAGGGGTTCAAAAGAACAGAATTGTACTC
GTCCGCCAAGAATTTGAATTCTTTACTTCCATCGCTGGGCATCAACACAG
ATTCCAATATGTAATCGAGTCCATCTGGGTGCTCATAGTCGTCATTCGGA
GCTGTTTCAGATTCGTCCATTTTTAAAGTTTGTTTACATTACATTCTAGT
ACGAGAATTGATTCCCCATTTAATGGATGTTGCGCTTTCTGAAGAATATT
ACACTTTATTGCCTCGGTCACACTCTGAATTTAAAAATGTTCCCTTATTC
GGAAGAAAATTGTTTATTTTTTATGATGCAACACATTTGTATATCCTTGC
AGTTCCAGTTCGACCGTTTTGCTGTAAGCGTTACCAGACTTTTTGTAGAA
AGTATCTGCCTTGTGATGAGCGCCCATATTTCAGATTTCCCCTGCATGGT
GAGTTGTCACCGCTCCACCGTGGTGGATTTCCCACTCCTCCCCCAGCCAG
TTGGGTTTCCATTTCGGAGCGATGAAGGGGCTGATTTGGATCCAATCGAA
GTTGTCGAACGATTGGCAGCACGTCTGAACTTTATGGGAGCCTGGTAGAA
GTTCATCGAGTCGATGGCTTCGAAATGGTTCTGAATATATCGATTTTATT
GGGCATTGGACGCTGGGCGGAGGGGCATCTTTCGCATTACAAGGCCATGG
TACTGGCACATTAGAAAAAATGGGTATTTATGCCAGTGTGATTAATTATT
TTTTCCCATTTTCGTGGTACTTTTTTGTTATTTATATATCAATTTATTTA
TTTAGTTATTTATCAATTTTTGGCTTAAGACAGATTCTAGTTTCTAGGAA
TTTTTGAAGCACTTCCTGTTGTTCGTAATCATCAAAAAATATTGAAAATT
GTTTTTTCTGGAAGCTTTATTTCCGCCTCAAGCAAACATTTTTTTTAATT
TCAAGGCCATAACAAAAATCTTGATAATTAAAAACGTGAAGAAAAATACG
TTAGTTTTTATGTAAATACCCATTAATTATATTATTTCCAAATATTTCCA
AATTGAATAGAATTGGTATATTAATGTTAAAAACATTTTTTTTATTTCAT
TTTTTAAAGTAGTATAATCTGTCTCTGAACATCATAAATATTTATTTATA
AAATCTTTTGCGTTAAAACATCTTTTGCATTAGATGGAGATTCACAATAT
TATTTAGAAGGTGTTGTAATATTTATTTGTACTGATAATTAAACAGTTTA
ACAATTATCCTCTTCTAAAAGGCTCCAGCGGTGTTCGTTTCTGTAAATTG
GTGGCAATTAATTTGGATGAATGGAATTATGCAAAGCGTGGAACATTTTT
CGCTGTGTACTAATCTGAAATTCTAGTTTATTGAATGCCTATGAATCTTC
TAGTTCAATTTGTTATCTTTTTACCATGCTCAATTTAATTTGCTTATGAC
ATCCTTAATTTTGCCATATCCCGACTGTACACTTTCGGCTAATTTATTGG
TGAACTTGGTAACCTCATCCTCCGGTTCGTAGTAGACAAGAAAGTAGACG
GCCAATCCGACCACAATGCCGACCACCAGCAATCCACTGATGATTGAAAC
AAGCACACTAATTGCACAACTGCAGCAGCTGGAAATGTTAAGAGTAAATA
AGTTATTATAATAAGTTATAAGTTATTATTATTGGTTATCATAATGTACT
TAACTACTCGCATTACCCCCAAAGGATGGGGCAAAGTCCTTTTCTCATAG
AAATGATGCAATACTTTCAAATTAATTACGCATGAAAAGTTGTCTAATAA
AAATGCATCCCCAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH11067.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6567-RB 3331 CG6567-RB 63..3331 1..3270 16310 99.9 Plus
CG4565-RB 897 CG4565-RB 1..705 1669..965 3525 100 Minus
CG42394.a 695 CG42394.a 157..695 3079..2541 2695 100 Minus
CG4565-RB 897 CG4565-RB 702..843 913..772 710 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6676632..6679128 3269..772 12425 99.9 Minus
chr3R 27901430 chr3R 6679189..6679960 772..1 3860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10851093..10853590 3270..772 12445 100 Minus
3R 32079331 3R 10853651..10854422 772..1 3860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10591924..10594421 3270..772 12455 99.9 Minus
3R 31820162 3R 10594482..10595253 772..1 3860 100 Minus
Blast to na_te.dros performed 2019-03-16 16:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1364..1518 2608..2451 162 58.8 Minus
S2 1735 S2 S2 1735bp 1432..1500 3083..3151 137 70 Plus

GH11067.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:08:50 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6676632..6679127 773..3269 97 <- Minus
chr3R 6679189..6679960 1..772 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:42 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..708 62..769 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:53 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..708 62..769 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:01:28 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..708 62..769 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:25 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..708 62..769 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:20:14 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..708 62..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:09 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..3268 1..3269 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:52 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..3268 1..3269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:01:28 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 30..1017 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:27 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 1..3268 1..3269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:20:14 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6567-RB 30..1017 1..988 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:50 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10851094..10853589 773..3269 99 <- Minus
3R 10853651..10854422 1..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:50 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10851094..10853589 773..3269 99 <- Minus
3R 10853651..10854422 1..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:50 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10851094..10853589 773..3269 99 <- Minus
3R 10853651..10854422 1..772 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:01:28 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6676816..6679311 773..3269 99 <- Minus
arm_3R 6679373..6680144 1..772 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:53 Download gff for GH11067.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10591925..10594420 773..3269 99 <- Minus
3R 10594482..10595253 1..772 100   Minus

GH11067.hyp Sequence

Translation from 61 to 768

> GH11067.hyp
MKPALTTVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKI
IYPTAPKQKYTPLDGELSNVWFDRKSVNIAASESKKSMSQCYDAVNQLID
EEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSFLNRGSV
VYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHP
LRNTLHELKTASITDLQQWIYEKLPPLENQVQNKL*

GH11067.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6567-PB 235 CG6567-PB 1..235 1..235 1238 100 Plus
CG18815-PC 216 CG18815-PC 7..211 8..220 267 34.3 Plus
CG18815-PB 216 CG18815-PB 7..211 8..220 267 34.3 Plus
CG18815-PA 216 CG18815-PA 7..211 8..220 267 34.3 Plus
CG18815-PD 221 CG18815-PD 7..211 8..220 267 34.3 Plus

GH11067.pep Sequence

Translation from 61 to 768

> GH11067.pep
MKPALTTVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKI
IYPTAPKQKYTPLDGELSNVWFDRKSVNIAASESKKSMSQCYDAVNQLID
EEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSFLNRGSV
VYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHP
LRNTLHELKTASITDLQQWIYEKLPPLENQVQNKL*

GH11067.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17085-PA 235 GF17085-PA 1..235 1..235 1105 85.5 Plus
Dana\GF25278-PA 216 GF25278-PA 3..211 4..220 281 35 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17261-PA 235 GG17261-PA 1..235 1..235 1210 94.5 Plus
Dere\GG15517-PA 216 GG15517-PA 3..211 4..220 273 34.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19562-PA 232 GH19562-PA 8..232 13..235 883 72 Plus
Dgri\GH14861-PA 216 GH14861-PA 3..211 4..220 272 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6567-PB 235 CG6567-PB 1..235 1..235 1238 100 Plus
CG18815-PC 216 CG18815-PC 7..211 8..220 267 34.3 Plus
CG18815-PB 216 CG18815-PB 7..211 8..220 267 34.3 Plus
CG18815-PA 216 CG18815-PA 7..211 8..220 267 34.3 Plus
CG18815-PD 221 CG18815-PD 7..211 8..220 267 34.3 Plus
CG18815-PE 232 CG18815-PE 7..211 8..220 267 34.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23857-PA 232 GI23857-PA 8..232 13..235 900 72.4 Plus
Dmoj\GI15223-PA 216 GI15223-PA 1..216 8..225 709 61 Plus
Dmoj\GI13712-PA 216 GI13712-PA 3..211 4..220 274 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21926-PA 214 GL21926-PA 1..214 1..214 887 73.8 Plus
Dper\GL16272-PA 216 GL16272-PA 3..211 4..220 274 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19689-PA 235 GA19689-PA 1..235 1..235 984 74.9 Plus
Dpse\GA15093-PA 216 GA15093-PA 3..211 4..220 274 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26145-PA 235 GM26145-PA 1..235 1..235 1223 96.6 Plus
Dsec\GM25286-PA 216 GM25286-PA 3..211 4..220 273 34.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20698-PA 235 GD20698-PA 1..235 1..235 1235 97.4 Plus
Dsim\GD14317-PA 216 GD14317-PA 3..211 4..220 273 34.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10571-PA 232 GJ10571-PA 8..232 13..235 876 72.9 Plus
Dvir\GJ17261-PA 217 GJ17261-PA 7..217 13..225 735 64.8 Plus
Dvir\GJ14054-PA 216 GJ14054-PA 3..211 4..220 271 33.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13386-PA 233 GK13386-PA 9..233 13..235 942 76.9 Plus
Dwil\GK17177-PA 216 GK17177-PA 3..211 4..220 273 34.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24662-PA 235 GE24662-PA 1..235 1..235 1221 96.2 Plus
Dyak\GE21832-PA 216 GE21832-PA 3..211 4..220 273 34.1 Plus