Clone GH11071 Report

Search the DGRC for GH11071

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:71
Vector:pOT2
Associated Gene/Transcriptmxt-RA
Protein status:GH11071.pep: gold
Preliminary Size:2328
Sequenced Size:2347

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2950 2002-12-10 Blastp of sequenced clone
CG2950 2003-01-01 Sim4 clustering to Release 3
CG2950 2008-04-29 Release 5.5 accounting
CG2950 2008-08-15 Release 5.9 accounting
CG2950 2008-12-18 5.12 accounting

Clone Sequence Records

GH11071.complete Sequence

2347 bp (2347 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003302

> GH11071.complete
CAACACCCACCGTAAAAAACGATTTTAGTCGCAGTCGCAGAGATTTTGGT
TTTGGGGGAGGTGCGGAAACAGCTTCTACGATTCATTTTTGATCAATTCT
TCAACAACATTTAAACGAACGAATAAGTTAGCAGACCATATAGACTGAAA
TCAGCAGATCCGGACACCAGGCGGGACAACCTTAAGACTTCTTCACGAGA
CGATATCGAATCCAACGAATCCCGAGAATGGCTCACACACACCTGGGACG
CGCCGTGAAAAACATTGAGGCGCCACGCCCGTTGAAGACACAATCGCGAT
CGTCGTTGAAGAACAGCTACCTGGTGATCGAGGAGCTAATCCAGTTGATA
GACAACGTGACCGTCGGTCTTCAGTCGTGCAACACCACGCCGGAATCGAT
CACGCTGCTCCTGCACAACCTCCGGGTGCATGGACCGCAACTGGAGGCGG
TGTCCAAGGATACACTGGACCGGGCCTTCGTCGTTTTCCGCAACGCTTCG
CAGGACGAACGGCTGAATATAACGACGCGCCTCAAGCTGCTCGAACTCAT
CGAGCTGCGCGCCAAGAGCTGGGACAATGACGACACAATCGCGTACTACA
AGTCCAAGCAGCAGATCTCCAACGTGGAGCTGCCTTCGGAATACCAGTAC
GATGCCGGCGTGCAGCCTGGCGCCTTCAGCACCTCCCCCACATTCGGCGT
CAGCGGCGGTGTTGGTGGCGTTAACGATGGAGCCGCAGCCGCCGCTGCCG
CCGTCTTCAATGCAGCATCTGCAGCTGCAGCCGCCCAAGCTGCGGCCATT
GCGGCCGTGGGCACATCCAACCAGCAGCACATGCTGCTGCCGCCCGGTGA
GGTCATTCGTAATTCGGGCAAGTTCCCCAAACCGACCAAGATTCCTGGCA
AGACGTACTGCAAGGACGAGGTCGTGATTCGCAATGCTGACTCCGGCAAA
GTAATGGGCATCAAGGGGCGTCGCGTGCACATGATCGAGGAGCTAAGCGA
AACCATTATATCGTTTCAAAGAGTCAACCCGGGTGCCAAGGAGCGTTTGG
TGCAGATTACTGGTCCAGCTGAGGATAAAATTAACTATGCCAAACAACTT
ATGGAGGACACCATTCGTCGGAACGCCTCGCCGGTGCGCCTGGAACCCGC
TCCTGCCGTTGGAGGATCCTGCTCCTCGCTTAACTCGTCCAACTCGGACG
ACGCCATTGTGCAACCAAGAACGCCAACCGGAAGCAGTTTGGCCAACCGG
CTAAGCTTTAACTCGGCCCAAAACTTCATGACCGCCACAGCTGCTGCACA
GCAGATCTCGCAGCAGATGCACCACCAAACGCATCACCTGCAGCACCAAC
AGCAGCAGCAGGTCGCCGCAGTAGCCGCCGCAGCAGCAGCGGCGGCACAT
GCTCAGGCGACAGCCGCTGCCGGTAAAGTCTTGCGTCCCAATCAACAGCT
GCTAATGCACTCATATTCCACAAACGATGCTTCCGTAGGTGAATACAAGT
TCACGGTCAACGTGGGCCAGCACCTGATCAAGATCACCGGCGACTGCTGC
GAACTAGTGCGCGTGGCCAAACTCGTGCTCGATGACTATTTTAGCAGCTC
GGAGTTTCTGGCATCCATTGAGGCTGGCGCCGCCTTCGACGGCACTTCGC
TGGTGACCACGCCATCGACTCCGCTTCCCGGAGCCGGGCCGCCGCAATTT
TGGCTGCCCGGCACGGACAGTGGCATTGGACTGAATTGCGTTGTTTCCTC
GTCAGCGAACAACAATGGTGAAGGCGACGACGAGGTGTTCGCTGAGCCCA
GCAATGGAGGATCATCGACTAGCAATCAGAATGGACTGGCCAGATCGCGT
CGCAGCCACTTTTCGCGCAAGGAGTCCACGCCGGAGACCAAGGGCGCTCG
GGAAAAGGGTGACTTGGACGATTTGGCAGGCACCAATTCCTTGAAAAGCA
ATGCATCTCGCGTTTCTTACGATATTGAACACTTGCTCTACTACTCCATG
AGTCCGCACTCGTGGACCCTGCCCACCGACTGGCAAAAGATGCAGGAGAC
AGCGCCCTCGATTCTGCGCAACAAGGATCTGCAGGATGAGAGCCAGCGCT
TCGATGGTGATAAGTATCTGGCCAGCATTAAGACGGCCGCCAAGCGAGAC
ATTGTGGCTGCCGATGAGGTCGAGACTCTGGACGAATAAAGCCATCAATC
GAGCGGCTCGAACTGACAATATAGAGTGTCCCGGGGTGAAGTGCCTGCTC
CCAGACGGAGCTGCAGTATGCTTCAATGCTTTTGGCCATGGCCACATCTA
ACAATCGCAAACTCAAAACGACCAAATGAAAAAAAAAAAAAAAAAAA

GH11071.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2950-RA 2832 CG2950-RA 11..2357 1..2347 11675 99.8 Plus
CG2950.e 2886 CG2950.e 1..2347 1..2347 11675 99.8 Plus
CG2950-RD 3551 CG2950-RD 11..2086 1..2076 10380 100 Plus
CG2950-RD 3551 CG2950-RD 3276..3549 2074..2347 1310 98.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4844759..4845334 629..54 2880 100 Minus
chr2L 23010047 chr2L 4843282..4843762 1565..1085 2315 98.8 Minus
chr2L 23010047 chr2L 4842834..4843227 1956..1563 1955 99.7 Minus
chr2L 23010047 chr2L 4844371..4844694 951..628 1620 100 Minus
chr2L 23010047 chr2L 4841223..4841475 2326..2074 1265 100 Minus
chr2L 23010047 chr2L 4842655..4842774 2076..1957 600 100 Minus
chr2L 23010047 chr2L 4844204..4844279 1023..948 380 100 Minus
chr2L 23010047 chr2L 4843828..4843890 1084..1022 315 100 Minus
chr2L 23010047 chr2L 4846355..4846409 55..1 275 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4845642..4846217 629..54 2880 100 Minus
2L 23513712 2L 4844166..4844646 1565..1085 2405 100 Minus
2L 23513712 2L 4843718..4844111 1956..1563 1970 100 Minus
2L 23513712 2L 4845254..4845577 951..628 1620 100 Minus
2L 23513712 2L 4842076..4842349 2347..2074 1310 98.5 Minus
2L 23513712 2L 4843539..4843658 2076..1957 600 100 Minus
2L 23513712 2L 4845087..4845162 1023..948 380 100 Minus
2L 23513712 2L 4844712..4844774 1084..1022 315 100 Minus
2L 23513712 2L 4847238..4847292 55..1 275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4845642..4846217 629..54 2880 100 Minus
2L 23513712 2L 4844166..4844646 1565..1085 2405 100 Minus
2L 23513712 2L 4843718..4844111 1956..1563 1970 100 Minus
2L 23513712 2L 4845254..4845577 951..628 1620 100 Minus
2L 23513712 2L 4842076..4842349 2347..2074 1310 98.5 Minus
2L 23513712 2L 4843539..4843658 2076..1957 600 100 Minus
2L 23513712 2L 4845087..4845162 1023..948 380 100 Minus
2L 23513712 2L 4844712..4844774 1084..1022 315 100 Minus
2L 23513712 2L 4847238..4847292 55..1 275 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:55:10 has no hits.

GH11071.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:55:54 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4841221..4841473 2076..2328 99 <- Minus
chr2L 4842656..4842774 1957..2075 100 <- Minus
chr2L 4842834..4843227 1563..1956 99 <- Minus
chr2L 4843285..4843449 1398..1562 98 == Minus
chr2L 4843508..4843762 1085..1339 98 <- Minus
chr2L 4843828..4843888 1024..1084 100 <- Minus
chr2L 4844204..4844275 952..1023 100 <- Minus
chr2L 4844371..4844514 808..951 100 == Minus
chr2L 4844591..4844692 630..731 100 <- Minus
chr2L 4844759..4845333 55..629 100 <- Minus
chr2L 4846356..4846409 1..54 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:43 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RC 1..1962 228..2189 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:30 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RC 1..1962 228..2189 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:40 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RA 1..1962 228..2189 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:51 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RC 1..1962 228..2189 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:50 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
mxt-RA 1..1962 228..2189 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:20:40 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RA 1..2326 1..2328 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:30 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RA 1..2326 1..2328 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:40 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RA 4..2329 1..2328 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:51 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
CG2950-RA 1..2326 1..2328 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:50 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
mxt-RA 4..2329 1..2328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:54 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4842095..4842347 2076..2328 99 <- Minus
2L 4843540..4843658 1957..2075 100 <- Minus
2L 4843718..4844111 1563..1956 100 <- Minus
2L 4844169..4844646 1085..1562 100 <- Minus
2L 4844712..4844772 1024..1084 100 <- Minus
2L 4845087..4845158 952..1023 100 <- Minus
2L 4845254..4845575 630..951 100 <- Minus
2L 4845642..4846216 55..629 100 <- Minus
2L 4847239..4847292 1..54 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:54 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4842095..4842347 2076..2328 99 <- Minus
2L 4843540..4843658 1957..2075 100 <- Minus
2L 4843718..4844111 1563..1956 100 <- Minus
2L 4844169..4844646 1085..1562 100 <- Minus
2L 4844712..4844772 1024..1084 100 <- Minus
2L 4845087..4845158 952..1023 100 <- Minus
2L 4845254..4845575 630..951 100 <- Minus
2L 4845642..4846216 55..629 100 <- Minus
2L 4847239..4847292 1..54 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:54 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4842095..4842347 2076..2328 99 <- Minus
2L 4843540..4843658 1957..2075 100 <- Minus
2L 4843718..4844111 1563..1956 100 <- Minus
2L 4844169..4844646 1085..1562 100 <- Minus
2L 4844712..4844772 1024..1084 100 <- Minus
2L 4845087..4845158 952..1023 100 <- Minus
2L 4845254..4845575 630..951 100 <- Minus
2L 4845642..4846216 55..629 100 <- Minus
2L 4847239..4847292 1..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:40 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4843540..4843658 1957..2075 100 <- Minus
arm_2L 4842095..4842347 2076..2328 99 <- Minus
arm_2L 4847239..4847292 1..54 100   Minus
arm_2L 4843718..4844111 1563..1956 100 <- Minus
arm_2L 4844169..4844646 1085..1562 100 <- Minus
arm_2L 4844712..4844772 1024..1084 100 <- Minus
arm_2L 4845087..4845158 952..1023 100 <- Minus
arm_2L 4845254..4845575 630..951 100 <- Minus
arm_2L 4845642..4846216 55..629 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:55 Download gff for GH11071.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4842095..4842347 2076..2328 99 <- Minus
2L 4843540..4843658 1957..2075 100 <- Minus
2L 4843718..4844111 1563..1956 100 <- Minus
2L 4844169..4844646 1085..1562 100 <- Minus
2L 4844712..4844772 1024..1084 100 <- Minus
2L 4845087..4845158 952..1023 100 <- Minus
2L 4845254..4845575 630..951 100 <- Minus
2L 4845642..4846216 55..629 100 <- Minus
2L 4847239..4847292 1..54 100   Minus

GH11071.pep Sequence

Translation from 227 to 2188

> GH11071.pep
MAHTHLGRAVKNIEAPRPLKTQSRSSLKNSYLVIEELIQLIDNVTVGLQS
CNTTPESITLLLHNLRVHGPQLEAVSKDTLDRAFVVFRNASQDERLNITT
RLKLLELIELRAKSWDNDDTIAYYKSKQQISNVELPSEYQYDAGVQPGAF
STSPTFGVSGGVGGVNDGAAAAAAAVFNAASAAAAAQAAAIAAVGTSNQQ
HMLLPPGEVIRNSGKFPKPTKIPGKTYCKDEVVIRNADSGKVMGIKGRRV
HMIEELSETIISFQRVNPGAKERLVQITGPAEDKINYAKQLMEDTIRRNA
SPVRLEPAPAVGGSCSSLNSSNSDDAIVQPRTPTGSSLANRLSFNSAQNF
MTATAAAQQISQQMHHQTHHLQHQQQQQVAAVAAAAAAAAHAQATAAAGK
VLRPNQQLLMHSYSTNDASVGEYKFTVNVGQHLIKITGDCCELVRVAKLV
LDDYFSSSEFLASIEAGAAFDGTSLVTTPSTPLPGAGPPQFWLPGTDSGI
GLNCVVSSSANNNGEGDDEVFAEPSNGGSSTSNQNGLARSRRSHFSRKES
TPETKGAREKGDLDDLAGTNSLKSNASRVSYDIEHLLYYSMSPHSWTLPT
DWQKMQETAPSILRNKDLQDESQRFDGDKYLASIKTAAKRDIVAADEVET
LDE*

GH11071.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14414-PA 651 GF14414-PA 1..651 1..653 2581 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24348-PA 650 GG24348-PA 1..650 1..653 2764 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13665-PA 663 GH13665-PA 1..663 1..653 2374 80.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
mxt-PE 653 CG2950-PE 1..653 1..653 3319 100 Plus
mxt-PC 653 CG2950-PC 1..653 1..653 3319 100 Plus
mxt-PA 653 CG2950-PA 1..653 1..653 3319 100 Plus
mxt-PB 653 CG2950-PB 1..653 1..653 3319 100 Plus
mxt-PG 631 CG2950-PG 1..631 1..653 3174 96.6 Plus
mxt-PF 629 CG2950-PF 1..629 1..653 3167 96.3 Plus
mxt-PD 775 CG2950-PD 1..623 1..627 3138 98.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21020-PA 664 GI21020-PA 1..664 1..653 2406 76.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18748-PA 656 GL18748-PA 1..656 1..653 2494 84.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15540-PA 656 GA15540-PA 1..656 1..653 2539 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18068-PA 648 GM18068-PA 1..648 1..653 3367 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22686-PA 648 GD22686-PA 1..648 1..653 3353 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16131-PA 671 GJ16131-PA 1..671 1..653 2449 79.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24594-PA 664 GK24594-PA 1..664 1..653 2417 77.6 Plus
Dwil\GK24595-PA 216 GK24595-PA 64..215 409..569 338 50.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14664-PA 657 GE14664-PA 1..657 1..653 2879 94.8 Plus

GH11071.hyp Sequence

Translation from 227 to 2188

> GH11071.hyp
MAHTHLGRAVKNIEAPRPLKTQSRSSLKNSYLVIEELIQLIDNVTVGLQS
CNTTPESITLLLHNLRVHGPQLEAVSKDTLDRAFVVFRNASQDERLNITT
RLKLLELIELRAKSWDNDDTIAYYKSKQQISNVELPSEYQYDAGVQPGAF
STSPTFGVSGGVGGVNDGAAAAAAAVFNAASAAAAAQAAAIAAVGTSNQQ
HMLLPPGEVIRNSGKFPKPTKIPGKTYCKDEVVIRNADSGKVMGIKGRRV
HMIEELSETIISFQRVNPGAKERLVQITGPAEDKINYAKQLMEDTIRRNA
SPVRLEPAPAVGGSCSSLNSSNSDDAIVQPRTPTGSSLANRLSFNSAQNF
MTATAAAQQISQQMHHQTHHLQHQQQQQVAAVAAAAAAAAHAQATAAAGK
VLRPNQQLLMHSYSTNDASVGEYKFTVNVGQHLIKITGDCCELVRVAKLV
LDDYFSSSEFLASIEAGAAFDGTSLVTTPSTPLPGAGPPQFWLPGTDSGI
GLNCVVSSSANNNGEGDDEVFAEPSNGGSSTSNQNGLARSRRSHFSRKES
TPETKGAREKGDLDDLAGTNSLKSNASRVSYDIEHLLYYSMSPHSWTLPT
DWQKMQETAPSILRNKDLQDESQRFDGDKYLASIKTAAKRDIVAADEVET
LDE*

GH11071.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
mxt-PE 653 CG2950-PE 1..653 1..653 3319 100 Plus
mxt-PC 653 CG2950-PC 1..653 1..653 3319 100 Plus
mxt-PA 653 CG2950-PA 1..653 1..653 3319 100 Plus
mxt-PB 653 CG2950-PB 1..653 1..653 3319 100 Plus
mxt-PG 631 CG2950-PG 1..631 1..653 3174 96.6 Plus