Clone GH11073 Report

Search the DGRC for GH11073

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:73
Vector:pOT2
Associated Gene/TranscriptCG2267-RA
Protein status:GH11073.pep: gold
Preliminary Size:1683
Sequenced Size:2355

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2267 2002-01-01 Sim4 clustering to Release 2
CG2267 2002-05-18 Blastp of sequenced clone
CG2267 2003-01-01 Sim4 clustering to Release 3
CG2267 2008-04-29 Release 5.5 accounting
CG2267 2008-08-15 Release 5.9 accounting
RpS26 2008-08-15 Release 5.9 accounting
CG2267 2008-12-18 5.12 accounting
RpS26 2008-12-18 5.12 accounting

Clone Sequence Records

GH11073.complete Sequence

2355 bp (2355 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118770

> GH11073.complete
TGGTGTGTACGCTAGTACTCCTAGCAAACACACTCATTCTACAAATGTCA
ACCGTTGTTGGTTTAACTCACATGCCTTTCCAATTCCATTCCATTCCTTT
AACCTACACATCACACAACAAATAAATTCCTGAACATAAAGATCATTTTT
GATACCTGAAATTTCCACACGAAATTTCTACACGAAATTTTCTGAACATG
GCCGGAGAAACAGAGCAGCTAACGTTGCTTAGTGAACTGAACAATATTGG
AGGTGGCGAGTTCGAGTCGGGATACTGCCTGAATGAGAAACCTATTCTGC
CGCCAGTGATGACTGACTGGAAGAGACTGGAAATGATGCGACTGCGCTTG
TGCGCCTTAACCAAGGAGGTGGTCCAGAAGAGGAACCAGATTACAAATCC
TGAACGGAGGGATGCATCTACCAATACAAAATCGCAACAAGGATTTGGTT
GTCCGGTCATAATGGGACGCTTCCGCCAGAGATTACAGCAATCGGAGACA
ATGATCTATGATCACACAGCCGAGATGACCATGCAGATTTCTGCTCCGCC
TAGCATGCCAATTGGGATGACTTCTCAGCTGGTAATGGAGGATGCTTCTC
TGACTCCGCCGCAAAGAGTTGTTGTCACGCTGACACCCGTGAAGTTGGCC
ACAGCAGAGAGTGTTTGGGTGACCAAGTTGGATCCACCGAAGGCGGAGAA
ACCCAAGCCAACGGAGAATGTCCTGGAACCACTTCATCGGAGCTCTACCA
GTCCTGATCTTTCGAAGCTTCATCACCAACTGTGGCGAAGAGATCTGATG
CAGATTCCCAAGTCACAGTTTACTTTGCCTATAAAATGTGAGCCACAAAG
TGTACAAGGTATCGAGCAGCAGCAACCCAATAAGCTTACGACAATCAGGA
GTCCCAGTCGAATCCCGAAACTGATTACCAGCCATGTGGCCAACAGTGCC
AGTGTCACCAAAACCCAGAGTGCCTACCAGGCCCGACGCACCTATGACGC
CAAAGTGGCTGCCAAGCGAAAAATTCTGGTGAGCAGGGGCCAGATTTCCT
CAGTCAAACAGAAACCTCTGCCTGATACCAGCCACTTGAATGTGCCGAAA
AGCATCAGGACTCCAGTGCCGGTCTATAAAAGACCAGGATATGTGCAGGA
CGAAGAGCAAATTCAAAAGAATCGCTTCAAGTCCTTGATTCTTCGCCAGG
CGGAGGAAAACAGGCGTATCCAAGACAAAATGCAACAGGAGCACCAGGGT
CTCATCGCTACCATGATGAACGATCTCAACAACGCCGTCGAGATCTCGAA
CGATTATAAGTCCTTGGAGAAGGCATTGCACCTGGACTCCAGCACCTCCA
GCGATCCCAGCCAGAACTGATCAGACAATACAGAGATGCGCTTTCAAAAT
TGTTAAACGTTCACCCGGGAACGGAATAGGACGATAGCAGTGAATAAGAG
GAACGGACGGCAAAACATAATACCCAATAATCCGCCACGAATTTTCCATT
CGGTGGCCTCTTTAATTGGAATTGAAAATTCTTGATTGGAACATTTTGAA
TTGAAGCAGCAATCAAATCGACTTTTCAACTCGCGCAAGAACTGTATTTT
CCCGTGGGGGTGCGACAAATCAGTTTGTATTGCAGTGTATATATTCAGAG
GATTATCCAAAGTCCATAATGTTCTCCGCCTTTTCAATTTCAGCACTGTG
TTGGAAAAAATTGTAATAATTATCTATTATCTGTATAAAAAAAAAAAAAA
AAAAACTCGAAATAAGCCGCCAAGATGACCAAGAAGCGCCGTAACGGAGG
ACGCAACAAGCACAATCGCGGCCATGTGAAGCCCGTGCGCTGCACCAACT
GCGCCCGCTGCGTGCCCAAGGACAAGGCAATCAAGAAGTTCGTCATCCGC
AACATCGTGGAGGCTGCCGCCGTGCGCGACATCACGGAGGCCAGCATCTG
GGACTCGTACGTGCTGCCCAAGCTCTATGCGAAGCTCCACTACTGCGTGT
CCTGCGCAATCCACTCCAAGGTGGTGCGCAACCGTTCGCGCGAGGCCCGC
CGCATCCGCACGCCGCCACTGCGTTCCTTCCCCAAGGACATGGCCCGCAA
CAACCAGAACAGGAAGTAGAGGTCTCGTCCAGCCGGAGGAGAGGAGCACT
GGGTGCACCACCTGACATCTCCATATGGAGTCTACCAATCTAGCCGGACT
CGCGCCCCAGTGCGTTCCGCTCTGGCGTCGAGGAATCGCCAAGATAAGCA
GACGAAATATATGCATCCAGTTCTTTTTTAATTTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

GH11073.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2267-RA 1808 CG2267-RA 38..1774 1..1737 8685 100 Plus
CG2267.a 1773 CG2267.a 32..1765 1..1737 8615 99.8 Plus
CG2267.b 1739 CG2267.b 1..1739 1..1735 8610 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26449767..26451196 1737..308 6985 99.2 Minus
chr2L 23010047 chr2L 18441252..18441772 2285..1765 2590 99.8 Minus
chr3R 27901430 chr3R 26451250..26451557 308..1 1510 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30627238..30628667 1737..308 7150 100 Minus
2L 23513712 2L 18442545..18443072 2292..1765 2625 99.8 Minus
3R 32079331 3R 30628721..30629028 308..1 1540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30368069..30369498 1737..308 7150 100 Minus
2L 23513712 2L 18442545..18443072 2292..1765 2625 99.8 Minus
3R 31820162 3R 30369552..30369859 308..1 1540 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:57:39 has no hits.

GH11073.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:58:20 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26449767..26451195 309..1737 99 <- Minus
chr3R 26451250..26451557 1..308 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:44 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1173 198..1370 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:52:46 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1173 198..1370 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:17 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1173 198..1370 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:10 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1173 198..1370 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:58 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1173 198..1370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:04:42 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:52:46 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:17 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1734 1..1734 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:10 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:58 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
CG2267-RA 1..1734 1..1734 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:20 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30627238..30628666 309..1737 100 <- Minus
3R 30628721..30629028 1..308 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:20 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30627238..30628666 309..1737 100 <- Minus
3R 30628721..30629028 1..308 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:20 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30627238..30628666 309..1737 100 <- Minus
3R 30628721..30629028 1..308 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:17 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26452960..26454388 309..1737 100 <- Minus
arm_3R 26454443..26454750 1..308 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:17:18 Download gff for GH11073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30368069..30369497 309..1737 100 <- Minus
3R 30369552..30369859 1..308 100   Minus

GH11073.pep Sequence

Translation from 197 to 1369

> GH11073.pep
MAGETEQLTLLSELNNIGGGEFESGYCLNEKPILPPVMTDWKRLEMMRLR
LCALTKEVVQKRNQITNPERRDASTNTKSQQGFGCPVIMGRFRQRLQQSE
TMIYDHTAEMTMQISAPPSMPIGMTSQLVMEDASLTPPQRVVVTLTPVKL
ATAESVWVTKLDPPKAEKPKPTENVLEPLHRSSTSPDLSKLHHQLWRRDL
MQIPKSQFTLPIKCEPQSVQGIEQQQPNKLTTIRSPSRIPKLITSHVANS
ASVTKTQSAYQARRTYDAKVAAKRKILVSRGQISSVKQKPLPDTSHLNVP
KSIRTPVPVYKRPGYVQDEEQIQKNRFKSLILRQAEENRRIQDKMQQEHQ
GLIATMMNDLNNAVEISNDYKSLEKALHLDSSTSSDPSQN*

GH11073.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23319-PA 440 GF23319-PA 18..409 12..369 571 37.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11920-PA 390 GG11920-PA 1..389 1..389 1491 75.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2267-PA 390 CG2267-PA 1..390 1..390 1998 100 Plus
CG2267-PB 389 CG2267-PB 1..389 1..390 1982 99.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12141-PA 381 GM12141-PA 1..381 1..390 1753 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16925-PA 382 GD16925-PA 1..382 1..390 1771 87.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23372-PA 390 GE23372-PA 1..390 1..390 1434 72.5 Plus

GH11073.hyp Sequence

Translation from 197 to 1369

> GH11073.hyp
MAGETEQLTLLSELNNIGGGEFESGYCLNEKPILPPVMTDWKRLEMMRLR
LCALTKEVVQKRNQITNPERRDASTNTKSQQGFGCPVIMGRFRQRLQQSE
TMIYDHTAEMTMQISAPPSMPIGMTSQLVMEDASLTPPQRVVVTLTPVKL
ATAESVWVTKLDPPKAEKPKPTENVLEPLHRSSTSPDLSKLHHQLWRRDL
MQIPKSQFTLPIKCEPQSVQGIEQQQPNKLTTIRSPSRIPKLITSHVANS
ASVTKTQSAYQARRTYDAKVAAKRKILVSRGQISSVKQKPLPDTSHLNVP
KSIRTPVPVYKRPGYVQDEEQIQKNRFKSLILRQAEENRRIQDKMQQEHQ
GLIATMMNDLNNAVEISNDYKSLEKALHLDSSTSSDPSQN*

GH11073.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2267-PA 390 CG2267-PA 1..390 1..390 1998 100 Plus
CG2267-PB 389 CG2267-PB 1..389 1..390 1982 99.7 Plus