Clone GH11113 Report

Search the DGRC for GH11113

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:13
Vector:pOT2
Associated Gene/TranscriptGalk-RA
Protein status:GH11113.pep: gold
Preliminary Size:2124
Sequenced Size:2047

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5288 2001-01-01 Release 2 assignment
CG5288 2001-09-19 Blastp of sequenced clone
CG5288 2003-01-01 Sim4 clustering to Release 3
CG5288 2008-04-29 Release 5.5 accounting
CG5288 2008-08-15 Release 5.9 accounting
CG5288 2008-12-18 5.12 accounting

Clone Sequence Records

GH11113.complete Sequence

2047 bp (2047 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058337

> GH11113.complete
CGTGCTCACACCGAAAACTAGAACTCCTCTCTGATAAGACGGCACCAAGT
TAATTTGACCTCAAACAGAGAAAGATAAGGCATTGTTGGGGTTAATGCTT
CTGCAAGCCTGGCAACTCCTAAATAACAGCTGTTGGCTATAGTCCTCTCG
CTCCCGCACACCCTTCCTTTTCATTTACCGGCAGAAATTGCACTTTTGTA
CTTGTTTTTTGCCCAATTAAGCGGTCAAATTGGCGTCAATCTAATGTTTT
AGTGACTTTGATGCCGTTTCCCCAACTGATAACCGCAATGTTAGTACATC
ACTTTGTGTGCTAATAGCTATTTGGACATATTGATAAGATTAACCAGTTG
CGACACGTTTACGGTTCGTCGACTGCGAAAATAATGGGCATTATTAAAGT
TTCACCCGCCTGCAGGTGAACATGACTGCCAACGGGAACGGAACTGCTCA
GGATTTGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGG
AATCCAAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAA
CAATTCGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAA
CATCATTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGG
CTGTAAGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGC
CAGCTTCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGC
CGATCTCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTT
GGTATAACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGC
AGCCAGTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCC
CTTGGCGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGT
TGGCCACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCT
TCCATTTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTAT
GGATCAGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCG
AGTTCCATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAG
TGCTTCGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTC
GGACTACAATGAACGAGTGGTGGAATGCCGATTGGCCACTAGATGGCTGG
CCAAGCGCAAGGGCTTGATCAACTGGGAGGATATTGTGCGCTTCATTGAT
CTAGAGGAGGCGTGCCAAATGGATAATGAGACTTTCGAGAAGTTGATTAA
GGACAACTTAACGAAGAGCAACTACACGCGAGCGGATATCTGCAAGGAGT
TGGGAGTCACCGAACAGGAACTGGAGACCAAGTTCCTATCCGCCAACACT
CGGCACATGGAGCAGTTCAAGCTGCGTCAACGTGCTCTGCATGTTATTCA
GGAATCCGGTCGCGTGGCCAAATTCCGGAAAATTTGTGAGGAACTCGCCG
GCGGAGCCAATAAGGAAGGTGCAAAACAGCTGGGTGAGCTCATGCGGCAA
TCCCACGAGAGTTTAAGGGAGCTATACGAATGCTCTCATCCTGATGTAGA
GCGCCTGATTGCCATATCGAACCAGCAGAACGTTAGCGCCCGAGTCACTG
GAGCTGGTTGGGGCGGTTGTATAGTTGCCATGTGCGATTCCATAGAAGCA
GCTGATGAGTACATAAAGGTTTTGAAGCGCGATTACTATGCTCAATTGCC
AACACATCTCCTGGAGCGTCATCAGCCCAACAACTTTAGCGAAGTGGTCT
TTGCCACTCTACCAGGAAACGGAGCCGAGTTGTATATACAGTGAACGCTT
GTGTAGCATTTTAATCCAACTTTTATACCAAAATCATCCTATCAGTCACT
ATAATCAAACGGTCATTTATAGAAAAAACATTTAATATGTAGAGTACTAT
GTACAATATATTAACAATTTACAAGCTAAAAAAAAAAAAAAAAAAAA

GH11113.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5288-RB 2067 CG5288-RB 29..2059 1..2031 10155 100 Plus
CG5288.c 1978 CG5288.c 365..1978 414..2027 8070 100 Plus
CG5288.b 2035 CG5288.b 423..2035 415..2027 8065 100 Plus
CG5288.c 1978 CG5288.c 29..366 1..338 1690 100 Plus
CG5288.b 2035 CG5288.b 149..425 89..365 1385 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8975971..8976706 1502..767 3680 100 Minus
chr3L 24539361 chr3L 8975191..8975511 2027..1707 1575 99.4 Minus
chr3L 24539361 chr3L 8977090..8977348 595..337 1250 98.8 Minus
chr3L 24539361 chr3L 8977457..8977706 338..89 1250 100 Minus
chr3L 24539361 chr3L 8975569..8975774 1707..1502 1015 99.5 Minus
chr3L 24539361 chr3L 8976851..8977026 768..593 880 100 Minus
chr3L 24539361 chr3L 8978014..8978103 90..1 435 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8983934..8984669 1502..767 3680 100 Minus
3L 28110227 3L 8983150..8983474 2031..1707 1625 100 Minus
3L 28110227 3L 8985052..8985310 595..337 1295 100 Minus
3L 28110227 3L 8985419..8985668 338..89 1250 100 Minus
3L 28110227 3L 8983532..8983737 1707..1502 1030 100 Minus
3L 28110227 3L 8984813..8984988 768..593 880 100 Minus
3L 28110227 3L 8985976..8986065 90..1 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8977034..8977769 1502..767 3680 100 Minus
3L 28103327 3L 8976250..8976574 2031..1707 1625 100 Minus
3L 28103327 3L 8978152..8978410 595..337 1295 100 Minus
3L 28103327 3L 8978519..8978768 338..89 1250 100 Minus
3L 28103327 3L 8976632..8976837 1707..1502 1030 100 Minus
3L 28103327 3L 8977913..8978088 768..593 880 100 Minus
3L 28103327 3L 8979076..8979165 90..1 450 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:34:38 has no hits.

GH11113.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:35:15 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8975191..8975510 1708..2027 99 <- Minus
chr3L 8975569..8975773 1503..1707 99 <- Minus
chr3L 8975971..8976704 769..1502 100 <- Minus
chr3L 8976851..8977024 595..768 100 <- Minus
chr3L 8977091..8977346 339..594 98 <- Minus
chr3L 8977457..8977705 90..338 100 <- Minus
chr3L 8978015..8978103 1..89 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:51 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 1..1473 422..1894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:32 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 1..1473 422..1894 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:27 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 1..1473 422..1894 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:18 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 1..1473 422..1894 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:18 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 1..1473 422..1894 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:01 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RB 25..2051 1..2027 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:32 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RB 25..2051 1..2027 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:27 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RB 27..2053 1..2027 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:18 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RB 25..2051 1..2027 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:18 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RB 27..2053 1..2027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:15 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8985053..8985308 339..594 100 <- Minus
3L 8985419..8985667 90..338 100 <- Minus
3L 8985977..8986065 1..89 100   Minus
3L 8983154..8983473 1708..2027 100 <- Minus
3L 8983532..8983736 1503..1707 100 <- Minus
3L 8983934..8984667 769..1502 100 <- Minus
3L 8984813..8984986 595..768 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:15 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8985053..8985308 339..594 100 <- Minus
3L 8985419..8985667 90..338 100 <- Minus
3L 8985977..8986065 1..89 100   Minus
3L 8983154..8983473 1708..2027 100 <- Minus
3L 8983532..8983736 1503..1707 100 <- Minus
3L 8983934..8984667 769..1502 100 <- Minus
3L 8984813..8984986 595..768 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:15 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8985053..8985308 339..594 100 <- Minus
3L 8985419..8985667 90..338 100 <- Minus
3L 8985977..8986065 1..89 100   Minus
3L 8983154..8983473 1708..2027 100 <- Minus
3L 8983532..8983736 1503..1707 100 <- Minus
3L 8983934..8984667 769..1502 100 <- Minus
3L 8984813..8984986 595..768 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:27 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8976254..8976573 1708..2027 100 <- Minus
arm_3L 8976632..8976836 1503..1707 100 <- Minus
arm_3L 8977034..8977767 769..1502 100 <- Minus
arm_3L 8977913..8978086 595..768 100 <- Minus
arm_3L 8978153..8978408 339..594 100 <- Minus
arm_3L 8978519..8978767 90..338 100 <- Minus
arm_3L 8979077..8979165 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:47 Download gff for GH11113.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8979077..8979165 1..89 100   Minus
3L 8978519..8978767 90..338 100 <- Minus
3L 8976254..8976573 1708..2027 100 <- Minus
3L 8976632..8976836 1503..1707 100 <- Minus
3L 8977034..8977767 769..1502 100 <- Minus
3L 8977913..8978086 595..768 100 <- Minus
3L 8978153..8978408 339..594 100 <- Minus

GH11113.pep Sequence

Translation from 421 to 1893

> GH11113.pep
MTANGNGTAQDLGAGIEIVAPQKLQPESKVYGRVQQLTAFFKQQFGANPD
FIVRVPGRVNIIGEHVDYCGYSVLPMAVSQSIFLAVAKNPSDSQLQLRNL
EEAKFTGYDADLKTLRIELPKSGGPAWYNYFLCGIKGIQESLGSQWKPIG
MRIAVDGNVPLAAGLSSSSAMVSSAVLATAHVQGKKLDRRELASISAMCE
QYIGTHSGGMDQAIAYLGRVGCAHHIEFHPKLKGTPVTLPAGKCFVVANS
LAQKNKAASSDYNERVVECRLATRWLAKRKGLINWEDIVRFIDLEEACQM
DNETFEKLIKDNLTKSNYTRADICKELGVTEQELETKFLSANTRHMEQFK
LRQRALHVIQESGRVAKFRKICEELAGGANKEGAKQLGELMRQSHESLRE
LYECSHPDVERLIAISNQQNVSARVTGAGWGGCIVAMCDSIEAADEYIKV
LKRDYYAQLPTHLLERHQPNNFSEVVFATLPGNGAELYIQ*

GH11113.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10135-PA 492 GF10135-PA 1..492 1..490 2279 87.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15045-PA 490 GG15045-PA 1..490 1..490 2576 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14960-PA 490 GH14960-PA 1..490 1..490 1832 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-PD 490 CG5288-PD 1..490 1..490 2540 100 Plus
Galk-PB 490 CG5288-PB 1..490 1..490 2540 100 Plus
Galk-PA 490 CG5288-PA 1..490 1..490 2540 100 Plus
Galk-PC 490 CG5288-PC 1..490 1..490 2540 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11486-PA 491 GI11486-PA 5..491 4..490 1888 71.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15042-PA 492 GL15042-PA 1..491 1..489 2067 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18788-PA 492 GA18788-PA 1..491 1..489 2060 79.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24899-PA 523 GM24899-PA 1..364 1..364 1935 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12949-PA 490 GD12949-PA 1..490 1..490 2620 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13681-PA 491 GJ13681-PA 5..490 4..489 1881 71.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12284-PA 490 GK12284-PA 5..490 3..489 2026 79.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21269-PA 490 GE21269-PA 1..490 1..490 2561 96.5 Plus

GH11113.hyp Sequence

Translation from 421 to 1893

> GH11113.hyp
MTANGNGTAQDLGAGIEIVAPQKLQPESKVYGRVQQLTAFFKQQFGANPD
FIVRVPGRVNIIGEHVDYCGYSVLPMAVSQSIFLAVAKNPSDSQLQLRNL
EEAKFTGYDADLKTLRIELPKSGGPAWYNYFLCGIKGIQESLGSQWKPIG
MRIAVDGNVPLAAGLSSSSAMVSSAVLATAHVQGKKLDRRELASISAMCE
QYIGTHSGGMDQAIAYLGRVGCAHHIEFHPKLKGTPVTLPAGKCFVVANS
LAQKNKAASSDYNERVVECRLATRWLAKRKGLINWEDIVRFIDLEEACQM
DNETFEKLIKDNLTKSNYTRADICKELGVTEQELETKFLSANTRHMEQFK
LRQRALHVIQESGRVAKFRKICEELAGGANKEGAKQLGELMRQSHESLRE
LYECSHPDVERLIAISNQQNVSARVTGAGWGGCIVAMCDSIEAADEYIKV
LKRDYYAQLPTHLLERHQPNNFSEVVFATLPGNGAELYIQ*

GH11113.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-PD 490 CG5288-PD 1..490 1..490 2540 100 Plus
Galk-PB 490 CG5288-PB 1..490 1..490 2540 100 Plus
Galk-PA 490 CG5288-PA 1..490 1..490 2540 100 Plus
Galk-PC 490 CG5288-PC 1..490 1..490 2540 100 Plus