BDGP Sequence Production Resources |
Search the DGRC for GH11117
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 111 |
Well: | 17 |
Vector: | pOT2 |
Associated Gene/Transcript | sip3-RA |
Protein status: | GH11117.pep: gold |
Preliminary Size: | 1725 |
Sequenced Size: | 2282 |
Gene | Date | Evidence |
---|---|---|
CG1937 | 2001-01-01 | Release 2 assignment |
CG1937 | 2001-10-10 | Blastp of sequenced clone |
CG1937 | 2003-01-01 | Sim4 clustering to Release 3 |
sip3 | 2008-04-29 | Release 5.5 accounting |
sip3 | 2008-08-15 | Release 5.9 accounting |
sip3 | 2008-12-18 | 5.12 accounting |
2282 bp (2282 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060677
> GH11117.complete CACGACTAAGTTCATACGTGTAATTATCGGTAGTTAAAAATAAAAATATT AATACGCCTTGATAGAGGCAACCCTCAGTTTCAGAGTTGAAAATCTCGAT GGCAATGCAAACAACTTCGTTCGGCTAACAAAACCCGACTAAATTCCAAC GTCAACGAGAGCATAGACGATATTTTCGGTTTCTTCCCAAGTGATACCGA TTCCGAGAGCTACGGCCTTATATGTAGAGTGGGGGCAGGCAGAGATCCCG GCCAAAATTAACATATTCCTGGAGACTATCAGCCAGCTGGCGGCCCTGGC GACCTCGACCGGCATCATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGC TGACCAGCGCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTAT CCTGCGGTGGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATA CATACAATTCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGA TCTTCCTGGGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGC TTTTGGTATGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGA TGACTTCAATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCA AATCATTCCATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCC CCCGTGCTCGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGT GCTAGGCATCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTT TGGTGCGTGGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATC CTTCTGACCGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGC GGAAATGCGCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTAT ATACAGAGCTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTT GTGGTGATCATGGCTAAAATATACGCGCTGCCCATGTTCGTATTCAGGCC TATGTTCTTTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTA TGTCCCGGCGTGCCATTCGCAACATGAATACCCTGTATCCCGACGCCACG CCTGAGGAGCTGCGCCAGTCAGACAACATCTGCATCATTTGTCGCGAGGA CATGGTCAATCACTCAAAGAAACTGCCCTGCGGCCACATCTTCCATACCA CATGCCTGCGCTCGTGGTTTCAGCGCCAGCAGACCTGTCCAACCTGCCGT TTGAACATCCTTCGAACTCCAACCGTGAACTCCACAGCGATGCCACGGCA AGGCGATGAGGCTGTGGCCGCAGCTGCTGGAAATCCCATTCCGGCTGCAG CAGGTGTTCAACCGGCTGGTGGTGTGCCTCCTCCAGCTCCAACTGCCGTA GTTGACGGCAATCAGGCAAGAGCCGACGTCAATGTAGCCGGAGGTCAAGC CTTGCCGCCAAACTTTGCGGATCTCTTCGGTGATGCCAGCGGCTTGCCCA ATGGATTGCCTAACCTGGCTGGTTTGCAGATCCCTCCTCCGCCAGTAATG CCCATGATTTCGCCTTTTATGATACCACCCCACTTCGGCTACCTCACGCC TCTGCCGCCTCCGCCGATTCCACAGGACCTGACCAATTTTACCGACGAAG AACTGCGGGCCATGGAGGGCCTTCAACGTGATCATATTGTGCAGCGTCTA AAGTTGCTGCAAAACATAAACCTAATGCTGGATTCCGCGGGGATAATGAT GTCCCAGTACCAAAGTTTGTCTGCGCGCCTGCAGCTTACTGCAGTGACGC CAGCCACCGCGGTCAACGGATCTGCTGATTCTAGCGTCTACGACATGCCC AGTACCTCGGCCACGGCCATGGCTCAGTTGGAGACTCACCAGGTTACCCC CACAGCAGCAGCCAGCTCAGCGTCTCCGACGATGCCTGCAGAGAAGGTAA CCATTGAGGATTTGGGAGCGGACGCAGACGAGGATGATATACCATCGACG GCCACGGAGGCAGTTAGCATTCCCAACTCCGATGCCGACTTTGAGGAGAA CTCCTCGGAGCTGGGCGAACTAAGGAAGCGCCGTTTGAAGTTCCTTGAAG AGCGGAACAAGTCTGCAGCCACTAATGAACGCACGACAGCGGAATAGACG CCCTACAATCTGATGTCAACACTCCAAAACAAAAAAAACCGGCAGCGACA ACTCTCATCCCAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dSyno-RA | 2341 | dSyno-RA | 81..2341 | 1..2261 | 11305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27595454..27596304 | 689..1539 | 4255 | 100 | Plus |
chr3R | 27901430 | chr3R | 27596631..27597140 | 1752..2261 | 2550 | 100 | Plus |
chr3R | 27901430 | chr3R | 27594595..27595038 | 1..444 | 2220 | 100 | Plus |
chr3R | 27901430 | chr3R | 27596362..27596576 | 1539..1753 | 1075 | 100 | Plus |
chr3R | 27901430 | chr3R | 27595209..27595399 | 498..688 | 955 | 100 | Plus |
chr3R | 27901430 | chr3R | 27595098..27595155 | 442..499 | 290 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31773097..31773947 | 689..1539 | 4255 | 100 | Plus |
3R | 32079331 | 3R | 31774274..31774797 | 1752..2275 | 2620 | 100 | Plus |
3R | 32079331 | 3R | 31772238..31772681 | 1..444 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 31774005..31774219 | 1539..1753 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 31772852..31773042 | 498..688 | 955 | 100 | Plus |
3R | 32079331 | 3R | 31772741..31772798 | 442..499 | 290 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 31513928..31514778 | 689..1539 | 4255 | 100 | Plus |
3R | 31820162 | 3R | 31515105..31515628 | 1752..2275 | 2620 | 100 | Plus |
3R | 31820162 | 3R | 31513069..31513512 | 1..444 | 2220 | 100 | Plus |
3R | 31820162 | 3R | 31514836..31515050 | 1539..1753 | 1075 | 100 | Plus |
3R | 31820162 | 3R | 31513683..31513873 | 498..688 | 955 | 100 | Plus |
3R | 31820162 | 3R | 31513572..31513629 | 442..499 | 290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27594595..27595036 | 1..442 | 95 | -> | Plus |
chr3R | 27595099..27595155 | 443..499 | 100 | -> | Plus |
chr3R | 27595211..27595399 | 500..688 | 100 | -> | Plus |
chr3R | 27595454..27596303 | 689..1538 | 100 | -> | Plus |
chr3R | 27596362..27596576 | 1539..1753 | 100 | -> | Plus |
chr3R | 27596633..27597140 | 1754..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 1..1881 | 317..2197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 1..1881 | 317..2197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 1..1881 | 317..2197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 1..1881 | 317..2197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 1..1881 | 317..2197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 23..2283 | 1..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 23..2283 | 1..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 20..2280 | 1..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 23..2283 | 1..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip3-RA | 20..2280 | 1..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31772742..31772798 | 443..499 | 100 | -> | Plus |
3R | 31772238..31772679 | 1..442 | 100 | -> | Plus |
3R | 31772854..31773042 | 500..688 | 100 | -> | Plus |
3R | 31773097..31773946 | 689..1538 | 100 | -> | Plus |
3R | 31774005..31774219 | 1539..1753 | 100 | -> | Plus |
3R | 31774276..31774783 | 1754..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31772742..31772798 | 443..499 | 100 | -> | Plus |
3R | 31772238..31772679 | 1..442 | 100 | -> | Plus |
3R | 31772854..31773042 | 500..688 | 100 | -> | Plus |
3R | 31773097..31773946 | 689..1538 | 100 | -> | Plus |
3R | 31774005..31774219 | 1539..1753 | 100 | -> | Plus |
3R | 31774276..31774783 | 1754..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31772742..31772798 | 443..499 | 100 | -> | Plus |
3R | 31772238..31772679 | 1..442 | 100 | -> | Plus |
3R | 31772854..31773042 | 500..688 | 100 | -> | Plus |
3R | 31773097..31773946 | 689..1538 | 100 | -> | Plus |
3R | 31774005..31774219 | 1539..1753 | 100 | -> | Plus |
3R | 31774276..31774783 | 1754..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27597960..27598401 | 1..442 | 100 | -> | Plus |
arm_3R | 27598464..27598520 | 443..499 | 100 | -> | Plus |
arm_3R | 27598576..27598764 | 500..688 | 100 | -> | Plus |
arm_3R | 27598819..27599668 | 689..1538 | 100 | -> | Plus |
arm_3R | 27599727..27599941 | 1539..1753 | 100 | -> | Plus |
arm_3R | 27599998..27600505 | 1754..2261 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31513069..31513510 | 1..442 | 100 | -> | Plus |
3R | 31513573..31513629 | 443..499 | 100 | -> | Plus |
3R | 31513685..31513873 | 500..688 | 100 | -> | Plus |
3R | 31513928..31514777 | 689..1538 | 100 | -> | Plus |
3R | 31514836..31515050 | 1539..1753 | 100 | -> | Plus |
3R | 31515107..31515614 | 1754..2261 | 100 | Plus |
Translation from 316 to 2196
> GH11117.hyp MQLLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFV IVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPR FVALFTVLLFLKSFHWLAEERVDFMERSPVLGWLFHIRVGSLLTVLGILD YVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTD TPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHS KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV AAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNF ADLFGDASGLPNGLPNLAGLQIPPPPVMPMISPFMIPPHFGYLTPLPPPP IPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTPTAAAS SASPTMPAEKVTIEDLGADADEDDIPSTATEAVSIPNSDADFEENSSELG ELRKRRLKFLEERNKSAATNERTTAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sip3-PB | 626 | CG1937-PB | 1..626 | 1..626 | 3216 | 100 | Plus |
sip3-PA | 626 | CG1937-PA | 1..626 | 1..626 | 3216 | 100 | Plus |
Trc8-PE | 804 | CG2304-PE | 458..777 | 136..425 | 210 | 24.8 | Plus |
Trc8-PA | 804 | CG2304-PA | 458..777 | 136..425 | 210 | 24.8 | Plus |
Trc8-PB | 804 | CG2304-PB | 458..777 | 136..425 | 210 | 24.8 | Plus |
Translation from 316 to 2196
> GH11117.pep MQLLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFV IVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPR FVALFTVLLFLKSFHWLAEERVDFMERSPVLGWLFHIRVGSLLTVLGILD YVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTD TPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHS KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV AAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNF ADLFGDASGLPNGLPNLAGLQIPPPPVMPMISPFMIPPHFGYLTPLPPPP IPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTPTAAAS SASPTMPAEKVTIEDLGADADEDDIPSTATEAVSIPNSDADFEENSSELG ELRKRRLKFLEERNKSAATNERTTAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22986-PA | 633 | GF22986-PA | 1..633 | 1..626 | 2431 | 79.6 | Plus |
Dana\GF22884-PA | 815 | GF22884-PA | 476..672 | 136..328 | 182 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11831-PA | 604 | GG11831-PA | 1..604 | 1..626 | 2888 | 91.4 | Plus |
Dere\GG12015-PA | 811 | GG12015-PA | 469..665 | 136..328 | 169 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14198-PA | 663 | GH14198-PA | 1..643 | 1..616 | 2107 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sip3-PB | 626 | CG1937-PB | 1..626 | 1..626 | 3216 | 100 | Plus |
sip3-PA | 626 | CG1937-PA | 1..626 | 1..626 | 3216 | 100 | Plus |
Trc8-PE | 804 | CG2304-PE | 458..777 | 136..425 | 210 | 24.8 | Plus |
Trc8-PA | 804 | CG2304-PA | 458..777 | 136..425 | 210 | 24.8 | Plus |
Trc8-PB | 804 | CG2304-PB | 458..777 | 136..425 | 210 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22108-PA | 635 | GI22108-PA | 1..634 | 1..623 | 2204 | 71.8 | Plus |
Dmoj\GI24463-PA | 811 | GI24463-PA | 470..738 | 136..399 | 185 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23355-PA | 662 | GL23355-PA | 1..662 | 1..626 | 2339 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15139-PA | 662 | GA15139-PA | 1..662 | 1..626 | 2313 | 72.9 | Plus |
Dpse\GA15345-PA | 801 | GA15345-PA | 503..719 | 171..384 | 177 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16451-PA | 626 | GM16451-PA | 1..626 | 1..626 | 3028 | 95.5 | Plus |
Dsec\GM12240-PA | 817 | GM12240-PA | 467..668 | 136..328 | 172 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21603-PA | 626 | GD21603-PA | 1..626 | 1..626 | 3067 | 96 | Plus |
Dsim\GD17753-PA | 462 | GD17753-PA | 117..312 | 136..327 | 177 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24224-PA | 632 | GJ24224-PA | 1..631 | 1..623 | 2261 | 72.1 | Plus |
Dvir\GJ10556-PA | 810 | GJ10556-PA | 470..666 | 136..328 | 181 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13173-PA | 619 | GK13173-PA | 1..615 | 1..624 | 2301 | 76.2 | Plus |