Clone GH11117 Report

Search the DGRC for GH11117

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:17
Vector:pOT2
Associated Gene/Transcriptsip3-RA
Protein status:GH11117.pep: gold
Preliminary Size:1725
Sequenced Size:2282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1937 2001-01-01 Release 2 assignment
CG1937 2001-10-10 Blastp of sequenced clone
CG1937 2003-01-01 Sim4 clustering to Release 3
sip3 2008-04-29 Release 5.5 accounting
sip3 2008-08-15 Release 5.9 accounting
sip3 2008-12-18 5.12 accounting

Clone Sequence Records

GH11117.complete Sequence

2282 bp (2282 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060677

> GH11117.complete
CACGACTAAGTTCATACGTGTAATTATCGGTAGTTAAAAATAAAAATATT
AATACGCCTTGATAGAGGCAACCCTCAGTTTCAGAGTTGAAAATCTCGAT
GGCAATGCAAACAACTTCGTTCGGCTAACAAAACCCGACTAAATTCCAAC
GTCAACGAGAGCATAGACGATATTTTCGGTTTCTTCCCAAGTGATACCGA
TTCCGAGAGCTACGGCCTTATATGTAGAGTGGGGGCAGGCAGAGATCCCG
GCCAAAATTAACATATTCCTGGAGACTATCAGCCAGCTGGCGGCCCTGGC
GACCTCGACCGGCATCATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGC
TGACCAGCGCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTAT
CCTGCGGTGGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATA
CATACAATTCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGA
TCTTCCTGGGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGC
TTTTGGTATGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGA
TGACTTCAATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCA
AATCATTCCATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCC
CCCGTGCTCGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGT
GCTAGGCATCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTT
TGGTGCGTGGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATC
CTTCTGACCGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGC
GGAAATGCGCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTAT
ATACAGAGCTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTT
GTGGTGATCATGGCTAAAATATACGCGCTGCCCATGTTCGTATTCAGGCC
TATGTTCTTTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTA
TGTCCCGGCGTGCCATTCGCAACATGAATACCCTGTATCCCGACGCCACG
CCTGAGGAGCTGCGCCAGTCAGACAACATCTGCATCATTTGTCGCGAGGA
CATGGTCAATCACTCAAAGAAACTGCCCTGCGGCCACATCTTCCATACCA
CATGCCTGCGCTCGTGGTTTCAGCGCCAGCAGACCTGTCCAACCTGCCGT
TTGAACATCCTTCGAACTCCAACCGTGAACTCCACAGCGATGCCACGGCA
AGGCGATGAGGCTGTGGCCGCAGCTGCTGGAAATCCCATTCCGGCTGCAG
CAGGTGTTCAACCGGCTGGTGGTGTGCCTCCTCCAGCTCCAACTGCCGTA
GTTGACGGCAATCAGGCAAGAGCCGACGTCAATGTAGCCGGAGGTCAAGC
CTTGCCGCCAAACTTTGCGGATCTCTTCGGTGATGCCAGCGGCTTGCCCA
ATGGATTGCCTAACCTGGCTGGTTTGCAGATCCCTCCTCCGCCAGTAATG
CCCATGATTTCGCCTTTTATGATACCACCCCACTTCGGCTACCTCACGCC
TCTGCCGCCTCCGCCGATTCCACAGGACCTGACCAATTTTACCGACGAAG
AACTGCGGGCCATGGAGGGCCTTCAACGTGATCATATTGTGCAGCGTCTA
AAGTTGCTGCAAAACATAAACCTAATGCTGGATTCCGCGGGGATAATGAT
GTCCCAGTACCAAAGTTTGTCTGCGCGCCTGCAGCTTACTGCAGTGACGC
CAGCCACCGCGGTCAACGGATCTGCTGATTCTAGCGTCTACGACATGCCC
AGTACCTCGGCCACGGCCATGGCTCAGTTGGAGACTCACCAGGTTACCCC
CACAGCAGCAGCCAGCTCAGCGTCTCCGACGATGCCTGCAGAGAAGGTAA
CCATTGAGGATTTGGGAGCGGACGCAGACGAGGATGATATACCATCGACG
GCCACGGAGGCAGTTAGCATTCCCAACTCCGATGCCGACTTTGAGGAGAA
CTCCTCGGAGCTGGGCGAACTAAGGAAGCGCCGTTTGAAGTTCCTTGAAG
AGCGGAACAAGTCTGCAGCCACTAATGAACGCACGACAGCGGAATAGACG
CCCTACAATCTGATGTCAACACTCCAAAACAAAAAAAACCGGCAGCGACA
ACTCTCATCCCAAAAAAAAAAAAAAAAAAAAA

GH11117.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
dSyno-RA 2341 dSyno-RA 81..2341 1..2261 11305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27595454..27596304 689..1539 4255 100 Plus
chr3R 27901430 chr3R 27596631..27597140 1752..2261 2550 100 Plus
chr3R 27901430 chr3R 27594595..27595038 1..444 2220 100 Plus
chr3R 27901430 chr3R 27596362..27596576 1539..1753 1075 100 Plus
chr3R 27901430 chr3R 27595209..27595399 498..688 955 100 Plus
chr3R 27901430 chr3R 27595098..27595155 442..499 290 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31773097..31773947 689..1539 4255 100 Plus
3R 32079331 3R 31774274..31774797 1752..2275 2620 100 Plus
3R 32079331 3R 31772238..31772681 1..444 2220 100 Plus
3R 32079331 3R 31774005..31774219 1539..1753 1075 100 Plus
3R 32079331 3R 31772852..31773042 498..688 955 100 Plus
3R 32079331 3R 31772741..31772798 442..499 290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31513928..31514778 689..1539 4255 100 Plus
3R 31820162 3R 31515105..31515628 1752..2275 2620 100 Plus
3R 31820162 3R 31513069..31513512 1..444 2220 100 Plus
3R 31820162 3R 31514836..31515050 1539..1753 1075 100 Plus
3R 31820162 3R 31513683..31513873 498..688 955 100 Plus
3R 31820162 3R 31513572..31513629 442..499 290 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:41:58 has no hits.

GH11117.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:42:47 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27594595..27595036 1..442 95 -> Plus
chr3R 27595099..27595155 443..499 100 -> Plus
chr3R 27595211..27595399 500..688 100 -> Plus
chr3R 27595454..27596303 689..1538 100 -> Plus
chr3R 27596362..27596576 1539..1753 100 -> Plus
chr3R 27596633..27597140 1754..2261 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:52 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1..1881 317..2197 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:48 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1..1881 317..2197 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:15 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1..1881 317..2197 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:51 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1..1881 317..2197 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:29 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1..1881 317..2197 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:22 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 23..2283 1..2261 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:48 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 23..2283 1..2261 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:15 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 20..2280 1..2261 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:52 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 23..2283 1..2261 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:29 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 20..2280 1..2261 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:47 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31772742..31772798 443..499 100 -> Plus
3R 31772238..31772679 1..442 100 -> Plus
3R 31772854..31773042 500..688 100 -> Plus
3R 31773097..31773946 689..1538 100 -> Plus
3R 31774005..31774219 1539..1753 100 -> Plus
3R 31774276..31774783 1754..2261 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:47 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31772742..31772798 443..499 100 -> Plus
3R 31772238..31772679 1..442 100 -> Plus
3R 31772854..31773042 500..688 100 -> Plus
3R 31773097..31773946 689..1538 100 -> Plus
3R 31774005..31774219 1539..1753 100 -> Plus
3R 31774276..31774783 1754..2261 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:47 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31772742..31772798 443..499 100 -> Plus
3R 31772238..31772679 1..442 100 -> Plus
3R 31772854..31773042 500..688 100 -> Plus
3R 31773097..31773946 689..1538 100 -> Plus
3R 31774005..31774219 1539..1753 100 -> Plus
3R 31774276..31774783 1754..2261 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:15 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27597960..27598401 1..442 100 -> Plus
arm_3R 27598464..27598520 443..499 100 -> Plus
arm_3R 27598576..27598764 500..688 100 -> Plus
arm_3R 27598819..27599668 689..1538 100 -> Plus
arm_3R 27599727..27599941 1539..1753 100 -> Plus
arm_3R 27599998..27600505 1754..2261 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:00 Download gff for GH11117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31513069..31513510 1..442 100 -> Plus
3R 31513573..31513629 443..499 100 -> Plus
3R 31513685..31513873 500..688 100 -> Plus
3R 31513928..31514777 689..1538 100 -> Plus
3R 31514836..31515050 1539..1753 100 -> Plus
3R 31515107..31515614 1754..2261 100   Plus

GH11117.hyp Sequence

Translation from 316 to 2196

> GH11117.hyp
MQLLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFV
IVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPR
FVALFTVLLFLKSFHWLAEERVDFMERSPVLGWLFHIRVGSLLTVLGILD
YVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTD
TPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI
RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHS
KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV
AAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNF
ADLFGDASGLPNGLPNLAGLQIPPPPVMPMISPFMIPPHFGYLTPLPPPP
IPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS
LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTPTAAAS
SASPTMPAEKVTIEDLGADADEDDIPSTATEAVSIPNSDADFEENSSELG
ELRKRRLKFLEERNKSAATNERTTAE*

GH11117.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-PB 626 CG1937-PB 1..626 1..626 3216 100 Plus
sip3-PA 626 CG1937-PA 1..626 1..626 3216 100 Plus
Trc8-PE 804 CG2304-PE 458..777 136..425 210 24.8 Plus
Trc8-PA 804 CG2304-PA 458..777 136..425 210 24.8 Plus
Trc8-PB 804 CG2304-PB 458..777 136..425 210 24.8 Plus

GH11117.pep Sequence

Translation from 316 to 2196

> GH11117.pep
MQLLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFV
IVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPR
FVALFTVLLFLKSFHWLAEERVDFMERSPVLGWLFHIRVGSLLTVLGILD
YVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTD
TPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI
RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHS
KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV
AAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNF
ADLFGDASGLPNGLPNLAGLQIPPPPVMPMISPFMIPPHFGYLTPLPPPP
IPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS
LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTPTAAAS
SASPTMPAEKVTIEDLGADADEDDIPSTATEAVSIPNSDADFEENSSELG
ELRKRRLKFLEERNKSAATNERTTAE*

GH11117.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22986-PA 633 GF22986-PA 1..633 1..626 2431 79.6 Plus
Dana\GF22884-PA 815 GF22884-PA 476..672 136..328 182 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11831-PA 604 GG11831-PA 1..604 1..626 2888 91.4 Plus
Dere\GG12015-PA 811 GG12015-PA 469..665 136..328 169 26.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14198-PA 663 GH14198-PA 1..643 1..616 2107 69.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-PB 626 CG1937-PB 1..626 1..626 3216 100 Plus
sip3-PA 626 CG1937-PA 1..626 1..626 3216 100 Plus
Trc8-PE 804 CG2304-PE 458..777 136..425 210 24.8 Plus
Trc8-PA 804 CG2304-PA 458..777 136..425 210 24.8 Plus
Trc8-PB 804 CG2304-PB 458..777 136..425 210 24.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22108-PA 635 GI22108-PA 1..634 1..623 2204 71.8 Plus
Dmoj\GI24463-PA 811 GI24463-PA 470..738 136..399 185 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23355-PA 662 GL23355-PA 1..662 1..626 2339 73.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15139-PA 662 GA15139-PA 1..662 1..626 2313 72.9 Plus
Dpse\GA15345-PA 801 GA15345-PA 503..719 171..384 177 27.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16451-PA 626 GM16451-PA 1..626 1..626 3028 95.5 Plus
Dsec\GM12240-PA 817 GM12240-PA 467..668 136..328 172 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21603-PA 626 GD21603-PA 1..626 1..626 3067 96 Plus
Dsim\GD17753-PA 462 GD17753-PA 117..312 136..327 177 27.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24224-PA 632 GJ24224-PA 1..631 1..623 2261 72.1 Plus
Dvir\GJ10556-PA 810 GJ10556-PA 470..666 136..328 181 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13173-PA 619 GK13173-PA 1..615 1..624 2301 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10965-PA 623 GE10965-PA 1..623 1..626 2928 92 Plus
Dyak\GE10451-PA 812 GE10451-PA 466..690 136..358 192 26.9 Plus