Clone GH11140 Report

Search the DGRC for GH11140

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:40
Vector:pOT2
Associated Gene/TranscriptCG4525-RA
Protein status:GH11140.pep: gold
Preliminary Size:2200
Sequenced Size:1940

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4525 2001-01-01 Release 2 assignment
CG4525 2001-07-04 Blastp of sequenced clone
CG4525 2003-01-01 Sim4 clustering to Release 3
CG4525 2008-04-29 Release 5.5 accounting
CG4525 2008-08-15 Release 5.9 accounting
CG4525 2008-12-18 5.12 accounting

Clone Sequence Records

GH11140.complete Sequence

1940 bp (1940 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051440

> GH11140.complete
CCGTAACCAAGCGTTGCCGACGAAAACAGAAAAACGCAAAACACACAAGA
CCCAAACACCGAGGAGCCAGCTGGGCAGTAAGGAGCGCAAATCCCGAGAA
AACGAACGGCTGTGCGAAAAAATGATACTTTCGCGCGGAAAAACCGACTC
GGCGAGCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTG
GAAGGCAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATC
ATCAGGCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGA
CGACGAGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGG
ATCAGTGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCG
CTGGCCCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAA
ATTGGATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGG
AGGCCCAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGA
CTCCTCTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCA
GCTGCAGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCC
TGGCTTCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTG
TACAAACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTA
TTTGGCCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGG
TCTTGGATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAAC
CTAAAGGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCA
GGAAATCAAGAATATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGC
GTCACAACTTGGTCGTTTTTCGGAACGGTGAAGGGGCATTGAGAGTCCTG
CCAGGATTATTGAATATCATTCCTGAGGCTCGCTTGAATCTGGCTATATA
CTATCTGAAGCAGGGCGATGTTCAGGAAGCTCATGCTCTGATGAAGGAAC
TACAGCCAACTTCGCCGCATGAGTACATACTCAAAGGAGTGGTCCATGCC
GCCCTGGGCCAGCAATTGGGATCGAAAGAGCACATCAAGACGGCCCAGCA
AAACCTGCATTTGGTGGGCAGTTCGGCAACAGAGTGTGACACTATACCGG
GTCGTCAGAGTATGGCCTCCGCCTTTTTCCTCTACGAGCAATTCGAGGAG
GTGCTGGTCTACATGAACTCCATTCGCAGTTACTTCGTGAACGACGATGT
TTTCAACTATAACTTTGCCCAGGCGAAATGCGCCACAGGATATTACAAGG
AGGCGGAGGAGTTGCTGATGCAGATCTCCGACATGGATATCAAGAACCAG
CATACCTACTGCATGATCCTGGCCAAGTGCCACATACATTGCGGTCACCC
TGAGCTAGCTTGGAATGTATTCATCACCAGGGATACGAATGCGGAGGCAT
TTATCCTGTTGCAACTGATTGCCAATGAGTGTTACAAGTGTGCCGAATTT
TGGGTGGCAGCCAAAGCATTTGATATGCTCGAAAAACTAGATCCCAGTCC
GGAGAATTGGGAGGGCAAAAGGGGCGCCTGCGCCGGAGTTTTGTTCGCCT
TGTGCACCAAGGCACAAAGAGGTCGTCCTGGTGGAGGAATCTCAGAGGTC
ATCGGCATCCTACGCGACTCGTCGAACTCGCAGGCTGAGGCCATGATCAA
AACGATTCGAAAGCACATCAATCATTTTAAATAAATAATAAACTGAAGGC
AAAATTAGATTTTGTTTATGTTAAGGCCAATTTCACACATATTAATACAA
TAAAAAGTTACTTTTCAAAATCAAAAAAAAAAAAAAAAAA

GH11140.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525.a 2226 CG4525.a 303..2226 1..1924 9620 100 Plus
CG4525-RA 1924 CG4525-RA 1..1924 1..1924 9620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11600502..11601388 288..1174 4390 99.7 Plus
chr3R 27901430 chr3R 11601450..11601911 1174..1635 2295 99.8 Plus
chr3R 27901430 chr3R 11601971..11602256 1636..1922 1385 99.7 Plus
chr3R 27901430 chr3R 11599176..11599341 124..289 770 97.6 Plus
chr3R 27901430 chr3R 11598993..11599115 1..124 555 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15775885..15776771 288..1174 4435 100 Plus
3R 32079331 3R 15776833..15777294 1174..1635 2310 100 Plus
3R 32079331 3R 15777354..15777643 1636..1925 1450 100 Plus
3R 32079331 3R 15774559..15774724 124..289 830 100 Plus
3R 32079331 3R 15774375..15774498 1..124 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15516716..15517602 288..1174 4435 100 Plus
3R 31820162 3R 15517664..15518125 1174..1635 2310 100 Plus
3R 31820162 3R 15518185..15518474 1636..1925 1450 100 Plus
3R 31820162 3R 15515390..15515555 124..289 830 100 Plus
3R 31820162 3R 15515206..15515329 1..124 620 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:55:00 has no hits.

GH11140.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:55:41 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11601971..11602256 1636..1922 99   Plus
chr3R 11598993..11599115 1..124 98 -> Plus
chr3R 11599177..11599341 125..289 97 -> Plus
chr3R 11600504..11601388 290..1174 99 -> Plus
chr3R 11601451..11601911 1175..1635 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:55 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 122..1834 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:01 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 122..1834 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:32 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 122..1834 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:20 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 122..1834 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:48 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 122..1834 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:46 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1922 1..1922 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:01 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1922 1..1922 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:32 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1922 1..1922 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:21 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1922 1..1922 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:48 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1881 42..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:41 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15774375..15774498 1..124 100 -> Plus
3R 15774560..15774724 125..289 100 -> Plus
3R 15775887..15776771 290..1174 100 -> Plus
3R 15776834..15777294 1175..1635 100 -> Plus
3R 15777354..15777640 1636..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:41 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15774375..15774498 1..124 100 -> Plus
3R 15774560..15774724 125..289 100 -> Plus
3R 15775887..15776771 290..1174 100 -> Plus
3R 15776834..15777294 1175..1635 100 -> Plus
3R 15777354..15777640 1636..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:41 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15774375..15774498 1..124 100 -> Plus
3R 15774560..15774724 125..289 100 -> Plus
3R 15775887..15776771 290..1174 100 -> Plus
3R 15776834..15777294 1175..1635 100 -> Plus
3R 15777354..15777640 1636..1922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:32 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11600097..11600220 1..124 100 -> Plus
arm_3R 11600282..11600446 125..289 100 -> Plus
arm_3R 11601609..11602493 290..1174 100 -> Plus
arm_3R 11602556..11603016 1175..1635 100 -> Plus
arm_3R 11603076..11603362 1636..1922 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:13 Download gff for GH11140.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15516718..15517602 290..1174 100 -> Plus
3R 15517665..15518125 1175..1635 100 -> Plus
3R 15518185..15518471 1636..1922 100   Plus
3R 15515206..15515329 1..124 100 -> Plus
3R 15515391..15515555 125..289 100 -> Plus

GH11140.hyp Sequence

Translation from 1 to 1833

> GH11140.hyp
RNQALPTKTEKRKTHKTQTPRSQLGSKERKSRENERLCEKMILSRGKTDS
ASSRNASGGPGSGLGVGRQARKTPAPASLEDFIIRRDYTGARAFLEFAND
DEDEEEGAHGSKQSQVDQWIAFCNFHLGDYQQALAQYKAIQQGSSTPDGK
LDLNLAVCMFYLGLYEEAQQLMANAADNPLKQRLLFHLAHKLGNEEEWSQ
LQEELQDSSSLEQQLSLASMHYMRAHYQEAIDVYKRVLVDNKEYQAINVY
LALCFYKLDYYDMSQEVLDVYLSQHGDSTIAINLKACNRFRLFNGRVAEQ
EIKNIADNGTFGADLLRHNLVVFRNGEGALRVLPGLLNIIPEARLNLAIY
YLKQGDVQEAHALMKELQPTSPHEYILKGVVHAALGQQLGSKEHIKTAQQ
NLHLVGSSATECDTIPGRQSMASAFFLYEQFEEVLVYMNSIRSYFVNDDV
FNYNFAQAKCATGYYKEAEELLMQISDMDIKNQHTYCMILAKCHIHCGHP
ELAWNVFITRDTNAEAFILLQLIANECYKCAEFWVAAKAFDMLEKLDPSP
ENWEGKRGACAGVLFALCTKAQRGRPGGGISEVIGILRDSSNSQAEAMIK
TIRKHINHFK*

GH11140.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 570 CG4525-PA 1..570 41..610 2979 100 Plus

GH11140.pep Sequence

Translation from 121 to 1833

> GH11140.pep
MILSRGKTDSASSRNASGGPGSGLGVGRQARKTPAPASLEDFIIRRDYTG
ARAFLEFANDDEDEEEGAHGSKQSQVDQWIAFCNFHLGDYQQALAQYKAI
QQGSSTPDGKLDLNLAVCMFYLGLYEEAQQLMANAADNPLKQRLLFHLAH
KLGNEEEWSQLQEELQDSSSLEQQLSLASMHYMRAHYQEAIDVYKRVLVD
NKEYQAINVYLALCFYKLDYYDMSQEVLDVYLSQHGDSTIAINLKACNRF
RLFNGRVAEQEIKNIADNGTFGADLLRHNLVVFRNGEGALRVLPGLLNII
PEARLNLAIYYLKQGDVQEAHALMKELQPTSPHEYILKGVVHAALGQQLG
SKEHIKTAQQNLHLVGSSATECDTIPGRQSMASAFFLYEQFEEVLVYMNS
IRSYFVNDDVFNYNFAQAKCATGYYKEAEELLMQISDMDIKNQHTYCMIL
AKCHIHCGHPELAWNVFITRDTNAEAFILLQLIANECYKCAEFWVAAKAF
DMLEKLDPSPENWEGKRGACAGVLFALCTKAQRGRPGGGISEVIGILRDS
SNSQAEAMIKTIRKHINHFK*

GH11140.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18537-PA 571 GF18537-PA 1..571 1..570 2875 92.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16947-PA 570 GG16947-PA 1..570 1..570 3034 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18216-PA 544 GH18216-PA 2..544 28..570 2530 85.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc26-PA 570 CG4525-PA 1..570 1..570 2979 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10170-PA 563 GI10170-PA 1..563 1..570 2658 86 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12705-PA 577 GL12705-PA 1..577 1..570 2619 85.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18233-PA 577 GA18233-PA 1..577 1..570 2619 85.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24254-PA 570 GM24254-PA 1..570 1..570 3022 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19043-PA 570 GD19043-PA 1..570 1..570 3055 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10871-PA 563 GJ10871-PA 1..563 1..570 2592 84.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11415-PA 576 GK11415-PA 3..576 2..570 2621 85.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24333-PA 570 GE24333-PA 1..570 1..570 3027 98.2 Plus