Clone GH11142 Report

Search the DGRC for GH11142

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:42
Vector:pOT2
Associated Gene/TranscriptCG7816-RD
Protein status:GH11142.pep: validated not full length
Preliminary Size:3330
Sequenced Size:3378

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7816 2001-01-01 Release 2 assignment
CG7816 2001-09-19 Blastp of sequenced clone
CG7816 2008-04-29 Release 5.5 accounting
CG7816 2008-08-15 Release 5.9 accounting
CG7816 2008-12-18 5.12 accounting

Clone Sequence Records

GH11142.complete Sequence

3378 bp assembled on 2006-11-09

GenBank Submission: AY060276

> GH11142.complete
CCGACGCGATAACACACGAATTGTGGAGCTTGGAGCATAAATTTCCGCAT
TAGCAACGCTCAAGTGTGATATAGTTTACTGGTATTGTGTTAACAGTTGG
CAGTATACAAATACCTCACGCCACAAATCAACTTTAAATCGCAGAAGAAT
CTATTGTCCTCTAGTCTTCCAGCAAAATAGTGCCACATTATGTTTATTAA
GTACTTGTGCGATTCGCCATATTCGTGAATAACTAACTAACTATCTGAGT
GTAATTGACAGGATTCCCGGAATTAATCTGAACTGTCTTTTCAGTGAAGG
CTCGCCCAAGAAACACAGCAATTAGTGCAACAGCTAAACAGATAATCCCG
AGTTATTGTGCCGAAATTGAATTATTTACTCATCTGATCAAACCGTAAAA
GCAAACTTGAGTGGCTTCCTAGTAGCGATTTTCGACTAATTTAAAAGAAA
CCTGAATCTGAACAAGAAGACTCTCTTTGCTATTGTTGTTTTGCGAATCT
TTAAAGGGCAAATACAGTAGAATAACAATAAAAGCGTGAAACAGTCATAG
TTCGCATAGAGTATTTGTAATATTGGAACAGATGAACTGAATGATAGTTA
ATACAGCCTCCTAGTCTCAGTCTTTAGAGATATTTTGGGTAACTCAAGTA
ATTACACGATGTCTAAATCTAATCTAGCTCATTTGCTTTCTGATAGTTCA
ATGACAACGACACTGCGAAAGATAAGAGTGTAGTATATACGTATATAGTT
ATTGTATAGCCATAGCTTACCGGATTGATTTCGCATCTCGCTACTGAAGT
TCCGAGGCATTCCCATTCTGCCCGTTCTGTCGGGGATTAGACATCATTCG
TCCGCTTCCAAGTTTGATTCCCCAATACACATGCGGAGTATTGCCGCTTA
GCAAAACCGCCGAAATCATGTCACTCCATTGTGCCAGCGCCATCGTAATC
TTATCGCGGCAAAGTGAACAGTTTAAGCTGCATCGTGCACATCAAATCGG
AAATCAAATGGAAACAAAGTATCTTGACGTGGGCGTTCCGAAGCAGCGTC
TCCTGAAAATTCGTTTAGTCTGTTTCTGCACATTGGAAGCGTCGGTTATC
GAGCTTGGAAATTAATTTTCGCCCAATTTACAATCTGTTTTGGTTGGTGG
CAGTGATATAAAAGTAGTTTACGATCGAGAGAAGTTTGATTTACAAGTAG
AATTCTTCTACTAATCGTACAGCAGATTCTAAAATAAAAAATCCTGGAAA
GCAATCACATTCAAACTAACTAACTGCATCTAAATTGCTTATTAATTATG
GAAAAAGCCAATTAATTATTGCTCGAACTCGAACAAGCCATATTGGCAAA
TATATATTTATCATTTAAGTACCTGCATTTTAGATAAAGTCTACCAGGTT
CGCTGTGATACGGGTAACAAGTTCCACAACGAACAATTTGATATTTTATT
GGTTATAGTGAGGCAGGACACGCTTACTCATCCTGATGGAGTAGCTATCG
GGCAATGGTCTTAGTTTGATTGACTGCCGTTCCCTATGAAGCCGTCTAGT
CACACTTAAGTTGCCATGATTAAATTTTACAGAGACTCGCTTATCGAACC
TGACAACGAGCGCAGTTGAGAGAGTTTTTCCCTGCCCCTTTATTGATTAT
GGCTGACATTGTCCATATCTAAAGGATTTTCGCATCACCGTCTGTCTGAT
ACTAAGAACCGCATCTAGTTATTCAATGATTTTGTTGCCAGGTGGCGGAT
TTGGGGAAACATTTGCTTAACTGGCTATTTGTATCAAAATTTACGTGTGT
GCTGACATTTCTTAAACCATTTAAATTATATTTTCTTTACTAGCCGAGTC
ATCATCGATCACGGCACATACTCCACCGAAAGTCACTGGACATGAGCAGG
CAGCAGTGACTGAAGAAACCCAACCCAGTTCCAGCACAGAGCAGCGCATA
AGTAGCCGTAAAAAGGCAGCCGAAAATGACCACGAACAGCAGCTTCTTCG
ATGAACACATCGCCATGATATACTCCAACCTGATGGACCAGTACATGCCC
GAGTACTTCAAAAGCTTTGAGTACACGCCATGGGTTTTCTCCCTGCTGGG
ATCGGTGGTAATTGGACTGAGTGGCATATTCCCGCTGATCATCATTCCCA
CGGAGGAGAAAATGGCTAAGGAGGGATACAAAGATCGTAAGTCACATGCG
TACGAAAAGTATATCAATTGAACTTGAATCACATCTCACCCTACAGCTGC
AGATTCAAAACTCCTGCGAGTGCTTCTGAGTTTCGCGGTCGGCGGTCTGC
TGGGCGATGTGTTCCTTCACCTGTTGCCAGAAGCCTGGGAGGGCGATAAT
CAAGATCCTTCTAGTCACCCATCCCTGCGCTCGGGCCTTTGGGTACTTTC
CGGCATACTGATCTTCACGATCGTGGAGAAAATCTTTTCCGGATATGCCA
GCGCGGACGAGGAGAACCCTCAGCCCAAGTGCGTGGAGATAGCCAACTGC
CTGTTGCGTCGACATGGCGGCCAACTACCAGAGGGCGAAACCTCTGAGAG
TTGTGGCGGCGCCTGCGACATCGAAGATGTAGGTAAAGTCTGTTTCCTAC
GCGAGCAGGAACAGAAGTCAAAGGAAAGGAAGGAACAGCCGAAGAAGGTG
GCTGGTTATCTGAACCTCTTGGCCAACTCAATTGACAATTTCACACACGG
TCTAGCCGTGGCTGGATCCTTTTTGGTGTCCTTCAGACACGGCATTCTAG
CCACTTTTGCCATATTGCTTCATGAAATTCCGCACGAGGTGGGGGATTTC
GCAATCCTGCTTCGATCCGGATTCAGTCGCTGGGACGCCGCGCGTGCGCA
ACTACTCACGGCGGGAGCTGGCCTGCTCGGTGCTCTGGTGGCCATCGGAG
GCTCCGGCGTAACGTCGGCCATGGAGGCACGTACTTCGTGGATTATGCCG
TTCACCGCCGGCGGCTTTCTGCACATTGCTCTGGTCACAGTATTACCTGA
TCTCTTGAAGGAGGAGGAGCGCAAGGAGTCCATTAAGCAGCTGCTAGCAC
TGGTATTTGGCATTGCGTTAATGGCCGTGATGACCATGCTATTCGAACAC
TAGGAACTTTAGCTGACAGCAGTATAAGAAGAAAATTGAAAGCAGTTTTT
AGTTTGTTCTAAGATTGTCATTGGCAGTTTTAAATTAACATGAATTTGTT
GTACTTTATGGGATTCGACATCCTGTCTGCGTTATGTAATTATAGCCAAT
ATGAATGATATTTAAACTATTATTAATGATTACGTATTACTGTATCATAC
TTATGAAACGAAAATTCAATAGACATTTAAGGGAGAGTCCTTTGCCCTCC
ACTATCCACGAAAAAAAAAAAAAAAAAA

GH11142.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7816-RC 1679 CG7816-RC 498..1613 2247..3362 5580 100 Plus
CG7816-RE 1535 CG7816-RE 420..1535 2247..3362 5580 100 Plus
CG7816-RD 1494 CG7816-RD 379..1494 2247..3362 5580 100 Plus
CG7816-RC 1679 CG7816-RC 1..497 1690..2186 2485 100 Plus
CG7816-RE 1535 CG7816-RE 76..419 1843..2186 1720 100 Plus
CG7816-RD 1494 CG7816-RD 36..378 1844..2186 1715 100 Plus
CG7816-RE 1535 CG7816-RE 1..76 1067..1142 380 100 Plus
CG7816-RD 1494 CG7816-RD 1..35 29..63 175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25687372..25689730 2354..1 11430 99.1 Minus
chr3R 27901430 chr3R 25686181..25686620 3360..2924 2120 99.3 Minus
chr3R 27901430 chr3R 25686896..25687312 2768..2352 2025 99 Minus
chr3R 27901430 chr3R 25686678..25686833 2924..2769 780 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:43:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29864889..29867242 2354..1 11770 100 Minus
3R 32079331 3R 29863699..29864137 3362..2924 2195 100 Minus
3R 32079331 3R 29864413..29864829 2768..2352 2085 100 Minus
3R 32079331 3R 29864195..29864350 2924..2769 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29605720..29608073 2354..1 11770 100 Minus
3R 31820162 3R 29604530..29604968 3362..2924 2195 100 Minus
3R 31820162 3R 29605244..29605660 2768..2352 2085 100 Minus
3R 31820162 3R 29605026..29605181 2924..2769 780 100 Minus
Blast to na_te.dros performed 2019-03-16 11:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 135..198 1065..1130 118 66.7 Plus
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 6271..6334 1065..1130 118 66.7 Plus

GH11142.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:42 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25686181..25686619 2925..3360 99 <- Minus
chr3R 25686678..25686833 2769..2924 100 <- Minus
chr3R 25686896..25687309 2355..2768 99 <- Minus
chr3R 25687372..25689730 1..2354 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:56 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 1..211 1976..2186 100 == Plus
CG7816-RD 212..1068 2247..3103 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:20:18 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 1..211 1976..2186 100 == Plus
CG7816-RD 212..1068 2247..3103 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:07 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RH 1..211 1976..2186 100 == Plus
CG7816-RH 212..1068 2247..3103 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:37:11 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 1..211 1976..2186 100 == Plus
CG7816-RD 212..1068 2247..3103 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:08 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
Zip99C-RH 1..211 1976..2186 100 == Plus
Zip99C-RH 212..1068 2247..3103 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:48:34 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RE 72..419 1836..2186 99 == Plus
CG7816-RE 420..1533 2247..3360 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:20:18 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 36..378 1844..2186 100 == Plus
CG7816-RD 379..1492 2247..3360 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:07 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RH 15..362 1838..2186 99 == Plus
CG7816-RH 363..1476 2247..3360 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:37:12 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 36..378 1844..2186 100 == Plus
CG7816-RD 379..1492 2247..3360 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:08 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
Zip99C-RH 15..362 1838..2186 99 == Plus
Zip99C-RH 363..1476 2247..3360 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:42 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29863701..29864136 2925..3360 100 <- Minus
3R 29864195..29864350 2769..2924 100 <- Minus
3R 29864413..29864826 2355..2768 100 <- Minus
3R 29864889..29867242 1..2354 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:42 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29863701..29864136 2925..3360 100 <- Minus
3R 29864195..29864350 2769..2924 100 <- Minus
3R 29864413..29864826 2355..2768 100 <- Minus
3R 29864889..29867242 1..2354 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:42 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29863701..29864136 2925..3360 100 <- Minus
3R 29864195..29864350 2769..2924 100 <- Minus
3R 29864413..29864826 2355..2768 100 <- Minus
3R 29864889..29867242 1..2354 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:07 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25689423..25689858 2925..3360 100 <- Minus
arm_3R 25689917..25690072 2769..2924 100 <- Minus
arm_3R 25690135..25690548 2355..2768 100 <- Minus
arm_3R 25690611..25692964 1..2354 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:49:21 Download gff for GH11142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29604532..29604967 2925..3360 100 <- Minus
3R 29605026..29605181 2769..2924 100 <- Minus
3R 29605244..29605657 2355..2768 100 <- Minus
3R 29605720..29608073 1..2354 100   Minus

GH11142.pep Sequence

Translation from 1975 to 2220

> GH11142.pep
MTTNSSFFDEHIAMIYSNLMDQYMPEYFKSFEYTPWVFSLLGSVVIGLSG
IFPLIIIPTEEKMAKEGYKDRKSHAYEKYIN*

GH11142.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16226-PA 357 GF16226-PA 1..72 1..70 342 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11991-PA 355 GG11991-PA 1..70 1..70 366 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13993-PA 355 GH13993-PA 1..70 1..70 295 71.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Zip99C-PJ 355 CG7816-PJ 1..70 1..70 368 100 Plus
Zip99C-PI 355 CG7816-PI 1..70 1..70 368 100 Plus
Zip99C-PH 355 CG7816-PH 1..70 1..70 368 100 Plus
Zip99C-PC 355 CG7816-PC 1..70 1..70 368 100 Plus
Zip99C-PE 355 CG7816-PE 1..70 1..70 368 100 Plus
Zip99C-PA 355 CG7816-PA 1..70 1..70 368 100 Plus
Zip99C-PD 355 CG7816-PD 1..70 1..70 368 100 Plus
Zip99C-PF 355 CG7816-PF 1..70 1..70 368 100 Plus
Zip99C-PG 355 CG7816-PG 1..70 1..70 368 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22338-PA 354 GI22338-PA 1..70 1..70 301 74.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13475-PA 360 GL13475-PA 1..70 1..70 337 81.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20606-PB 360 GA20606-PB 1..70 1..70 337 81.4 Plus
Dpse\GA20606-PA 360 GA20606-PA 1..70 1..70 337 81.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12209-PA 355 GM12209-PA 1..70 1..70 373 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17600-PA 355 GD17600-PA 1..70 1..70 373 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10525-PA 355 GJ10525-PA 1..70 1..70 310 74.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13376-PA 355 GK13376-PA 1..71 1..70 320 81.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10416-PA 355 GE10416-PA 1..70 1..70 379 98.6 Plus

GH11142.hyp Sequence

Translation from 1975 to 2220

> GH11142.hyp
MTTNSSFFDEHIAMIYSNLMDQYMPEYFKSFEYTPWVFSLLGSVVIGLSG
IFPLIIIPTEEKMAKEGYKDRKSHAYEKYIN*

GH11142.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Zip99C-PJ 355 CG7816-PJ 1..70 1..70 368 100 Plus
Zip99C-PI 355 CG7816-PI 1..70 1..70 368 100 Plus
Zip99C-PH 355 CG7816-PH 1..70 1..70 368 100 Plus
Zip99C-PC 355 CG7816-PC 1..70 1..70 368 100 Plus
Zip99C-PE 355 CG7816-PE 1..70 1..70 368 100 Plus