Clone GH11143 Report

Search the DGRC for GH11143

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:43
Vector:pOT2
Associated Gene/TranscriptCG13890-RA
Protein status:GH11143.pep: gold
Preliminary Size:1238
Sequenced Size:1135

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13890 2001-01-01 Release 2 assignment
CG13890 2002-06-12 Blastp of sequenced clone
CG13890 2003-01-01 Sim4 clustering to Release 3
CG13890 2008-04-29 Release 5.5 accounting
CG13890 2008-08-15 Release 5.9 accounting
CG13890 2008-12-18 5.12 accounting

Clone Sequence Records

GH11143.complete Sequence

1135 bp (1135 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122107

> GH11143.complete
CTGGCAGCAAGATGACCTACCAAGGATACAAGGAACTGCTTGTGGAGCAG
CAGGGCAAGCTGCTCGTGGCCAAGTTCAACAATCCGAAGAAGAAGAACTG
CATCAACAGGGTCGCCTACCAGGAGATGACCCGTGTGTTGACCGAGGTCA
ACGACGATGAGGGCGTAACCATTGTGGTTTTCACCGGCGTGGGTGACATC
TTTACGTCCGGCAACGACTTGTCCCAATCCTCCAATACCGATGACATCGA
CGCCTTCTTCAAGCAGTCCAATGCGACTTTCAAGGCCATGGTTCTGAGCT
TCGTCAACTGCAGAAAGATTGTGCTTGCCCTGGTGAACGGACCTGCCATT
GGGATTGGAGCCACCATTGTGGGATTGTGCGATGTGGCTTGGTGCTCCGA
AACGACCTACTTCTACACGCCATTCACCAAACTGGGATTGGTGCCAGAGG
GCGGTTCCTCCTATATGCTGCCCCTCATCTTGGGGCGCTCAAAGGCGTCG
GAAATCCTGCTGCTAAGCGAACCGCTGAGCGCCCAGGAGGCATATCAGTT
CAACTTTGTTTCGAGGATCTTCAAGGCCAGCGAATTGGAGTCGGTGATTT
GGCCCAAATTGCGTCAGTATTCCGAGCTGCCGACGAACTCCCTTCTGCAG
GGGAAACGCCTCGTCAAGGATGGCTTCCTGGAGAATCTCATCAAGGCCAA
CGAGGCGGAGTGCAAGCAGCTGCTCCAACAGTTCCAGCATCCCGAGTTTG
CCCAGGCCATCATAGACTTTGCCAGCCGTAAAAACAAGGCGAAATTATAA
ATACGGCTTAAGTTTATTACCGTCTCAGTGATTTTGTCCGCCTATTTTAA
AACCCAAGAGATATGAATGCTAATTCTTGTGGCACAAACATCAAAGCAAA
TAGACTTCTTAGCGATTAGATTAGGGACATAATGTGTGCCTTTTGCACCA
TAACCATAGGTTAATCTCTTGCACTATCTGTGTATGTACATATGTACCAA
TATATTGCCAAAGTGCTGATTAAAAACAATTGAAGAACGCCACCTACCTG
TTTGTGAATGAATCGCACAGCTGTGGTCAAGATAATAGAATGTGTAATAT
ATGAATAAATATATAAATATATTTTAAAAAAAAAA

GH11143.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-RA 1322 CG13890-RA 178..1305 1..1128 5640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 851755..852476 404..1125 3595 99.9 Plus
chr3L 24539361 chr3L 851234..851518 1..285 1395 99.3 Plus
chr3L 24539361 chr3L 851574..851696 282..404 615 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 851952..852676 404..1128 3625 100 Plus
3L 28110227 3L 851431..851715 1..285 1425 100 Plus
3L 28110227 3L 851771..851893 282..404 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 851952..852676 404..1128 3625 100 Plus
3L 28103327 3L 851431..851715 1..285 1425 100 Plus
3L 28103327 3L 851771..851893 282..404 615 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:13:17 has no hits.

GH11143.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:14:39 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 851234..851517 1..284 99 -> Plus
chr3L 851577..851696 285..404 100 -> Plus
chr3L 851756..852442 405..1091 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:57 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 1..789 12..800 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:34 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 1..789 12..800 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:56:57 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 1..789 12..800 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:15 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 1..789 12..800 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:00 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 1..789 12..800 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:50:42 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 113..1237 1..1125 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:34 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 113..1237 1..1125 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:56:57 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 86..1210 1..1125 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:15 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 113..1237 1..1125 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:00 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 86..1210 1..1125 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:39 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 851774..851893 285..404 100 -> Plus
3L 851431..851714 1..284 100 -> Plus
3L 851953..852673 405..1125 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:39 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 851774..851893 285..404 100 -> Plus
3L 851431..851714 1..284 100 -> Plus
3L 851953..852673 405..1125 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:39 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 851774..851893 285..404 100 -> Plus
3L 851431..851714 1..284 100 -> Plus
3L 851953..852673 405..1125 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:56:57 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 851431..851714 1..284 100 -> Plus
arm_3L 851774..851893 285..404 100 -> Plus
arm_3L 851953..852673 405..1125 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:11 Download gff for GH11143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 851431..851714 1..284 100 -> Plus
3L 851774..851893 285..404 100 -> Plus
3L 851953..852673 405..1125 100   Plus

GH11143.hyp Sequence

Translation from 2 to 799

> GH11143.hyp
GSKMTYQGYKELLVEQQGKLLVAKFNNPKKKNCINRVAYQEMTRVLTEVN
DDEGVTIVVFTGVGDIFTSGNDLSQSSNTDDIDAFFKQSNATFKAMVLSF
VNCRKIVLALVNGPAIGIGATIVGLCDVAWCSETTYFYTPFTKLGLVPEG
GSSYMLPLILGRSKASEILLLSEPLSAQEAYQFNFVSRIFKASELESVIW
PKLRQYSELPTNSLLQGKRLVKDGFLENLIKANEAECKQLLQQFQHPEFA
QAIIDFASRKNKAKL*

GH11143.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-PA 262 CG13890-PA 1..262 4..265 1334 100 Plus
CG6543-PA 295 CG6543-PA 40..223 9..195 193 26.1 Plus
CG6543-PB 295 CG6543-PB 40..223 9..195 193 26.1 Plus
CG8778-PA 299 CG8778-PA 27..250 2..222 169 25.5 Plus
CG5844-PA 378 CG5844-PA 47..226 10..189 155 22.8 Plus

GH11143.pep Sequence

Translation from 11 to 799

> GH11143.pep
MTYQGYKELLVEQQGKLLVAKFNNPKKKNCINRVAYQEMTRVLTEVNDDE
GVTIVVFTGVGDIFTSGNDLSQSSNTDDIDAFFKQSNATFKAMVLSFVNC
RKIVLALVNGPAIGIGATIVGLCDVAWCSETTYFYTPFTKLGLVPEGGSS
YMLPLILGRSKASEILLLSEPLSAQEAYQFNFVSRIFKASELESVIWPKL
RQYSELPTNSLLQGKRLVKDGFLENLIKANEAECKQLLQQFQHPEFAQAI
IDFASRKNKAKL*

GH11143.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24414-PA 260 GF24414-PA 1..259 1..259 1128 78.8 Plus
Dana\GF21279-PA 260 GF21279-PA 33..251 32..240 191 26.6 Plus
Dana\GF11161-PA 293 GF11161-PA 43..221 11..192 187 27.2 Plus
Dana\GF11465-PA 299 GF11465-PA 36..250 8..219 172 25.3 Plus
Dana\GF20237-PA 318 GF20237-PA 62..243 21..191 171 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14742-PA 262 GG14742-PA 1..262 1..262 1330 94.3 Plus
Dere\GG22466-PA 294 GG22466-PA 51..222 17..192 189 25 Plus
Dere\GG22562-PA 299 GG22562-PA 31..250 3..219 171 25.6 Plus
Dere\GG12699-PA 260 GG12699-PA 10..254 6..243 157 23.2 Plus
Dere\GG20659-PA 285 GG20659-PA 34..217 9..196 152 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16867-PA 259 GH16867-PA 2..258 3..259 927 64.6 Plus
Dgri\GH11876-PA 272 GH11876-PA 10..272 3..262 494 37.6 Plus
Dgri\GH20865-PA 293 GH20865-PA 42..221 8..192 191 27 Plus
Dgri\GH22640-PA 298 GH22640-PA 35..249 8..219 156 24 Plus
Dgri\GH21207-PA 382 GH21207-PA 46..228 4..186 155 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dci-PA 262 CG13890-PA 1..262 1..262 1334 100 Plus
Echs1-PA 295 CG6543-PA 40..223 6..192 193 26.1 Plus
Echs1-PB 295 CG6543-PB 40..223 6..192 193 26.1 Plus
CG8778-PA 299 CG8778-PA 36..250 8..219 168 25.7 Plus
CG5844-PA 378 CG5844-PA 47..226 7..186 155 22.8 Plus
CG9577-PA 312 CG9577-PA 56..233 21..187 152 24.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11426-PA 260 GI11426-PA 1..259 1..259 911 62.9 Plus
Dmoj\GI15664-PA 275 GI15664-PA 16..272 3..256 481 37.7 Plus
Dmoj\GI20973-PA 293 GI20973-PA 50..223 17..194 197 27.5 Plus
Dmoj\GI21154-PA 301 GI21154-PA 38..252 8..219 174 25.3 Plus
Dmoj\GI18602-PA 283 GI18602-PA 45..214 24..196 164 25 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16867-PA 261 GL16867-PA 3..260 2..259 976 72.1 Plus
Dper\GL16855-PA 154 GL16855-PA 1..154 1..154 555 66.9 Plus
Dper\GL14379-PA 268 GL14379-PA 30..246 6..227 256 30.5 Plus
Dper\GL16995-PA 296 GL16995-PA 72..224 36..192 177 25.5 Plus
Dper\GL13079-PA 319 GL13079-PA 63..244 21..191 165 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23791-PA 261 GA23791-PA 3..260 2..259 976 72.1 Plus
Dpse\GA12604-PA 260 GA12604-PA 1..259 1..259 962 67.6 Plus
Dpse\GA13245-PA 252 GA13245-PA 14..243 6..240 255 30.1 Plus
Dpse\GA19673-PB 296 GA19673-PB 53..224 17..192 193 26.1 Plus
Dpse\GA19673-PA 296 GA19673-PA 53..224 17..192 193 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14360-PA 262 GM14360-PA 1..262 1..262 1298 92.7 Plus
Dsec\GM20252-PA 294 GM20252-PA 39..222 6..192 192 26.1 Plus
Dsec\GM23012-PA 312 GM23012-PA 56..237 21..191 156 24.2 Plus
Dsec\GM24034-PA 374 GM24034-PA 47..226 7..186 152 22.8 Plus
Dsec\GM21756-PA 285 GM21756-PA 34..217 9..196 151 25.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13579-PA 262 GD13579-PA 1..262 1..262 1323 94.3 Plus
Dsim\GD25738-PA 294 GD25738-PA 39..222 6..192 192 26.1 Plus
Dsim\GD25824-PA 299 GD25824-PA 31..250 3..219 169 25.6 Plus
Dsim\GD18835-PA 378 GD18835-PA 47..226 7..186 151 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13621-PA 260 GJ13621-PA 1..259 1..259 985 69.1 Plus
Dvir\GJ19197-PA 274 GJ19197-PA 15..271 3..256 479 37.3 Plus
Dvir\GJ20693-PA 293 GJ20693-PA 36..221 3..192 199 26.3 Plus
Dvir\GJ21004-PA 281 GJ21004-PA 18..232 8..219 180 25.8 Plus
Dvir\GJ23164-PA 385 GJ23164-PA 47..226 7..186 158 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17361-PA 262 GK17361-PA 1..261 1..259 967 67.8 Plus
Dwil\GK17937-PA 295 GK17937-PA 52..223 17..192 191 25.6 Plus
Dwil\GK25674-PA 247 GK25674-PA 6..230 3..229 186 28.9 Plus
Dwil\GK15915-PA 302 GK15915-PA 39..253 8..219 176 25.3 Plus
Dwil\GK14405-PA 390 GK14405-PA 49..228 7..186 165 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21104-PA 262 GE21104-PA 1..262 1..262 1312 92.4 Plus
Dyak\GE13337-PA 294 GE13337-PA 51..222 17..192 191 25.6 Plus
Dyak\GE13432-PA 299 GE13432-PA 31..250 3..219 165 25.1 Plus
Dyak\GE15891-PA 314 GE15891-PA 58..239 21..191 156 24.2 Plus
Dyak\GE11645-PA 285 GE11645-PA 34..217 9..196 154 25.1 Plus