Clone GH11150 Report

Search the DGRC for GH11150

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:111
Well:50
Vector:pOT2
Associated Gene/TranscriptTfIIEalpha-RA
Protein status:GH11150.pep: gold
Preliminary Size:1242
Sequenced Size:1634

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10415 2001-01-01 Release 2 assignment
CG10415 2002-06-07 Blastp of sequenced clone
CG10415 2003-01-01 Sim4 clustering to Release 3
TfIIEalpha 2008-04-29 Release 5.5 accounting
TfIIEalpha 2008-08-15 Release 5.9 accounting
TfIIEalpha 2008-12-18 5.12 accounting

Clone Sequence Records

GH11150.complete Sequence

1634 bp (1634 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119499

> GH11150.complete
CTGCACAAAGAAGAATTTGGCGGTGGAAATTTTATTTTTGCCGTGGAAAA
TCATACGAAATACGGGCAAACAGCGAGCAGATGACTGCCGGTAGACCCAT
GAAGATCCACGGACCCACTGCCTGCATTGAATAACCGCAAAGTGCTCTGC
TTCCGGAGTTCCGGTTTCGAGAGTCTGATAAACACACAATGTCGTCGACA
TCGACGGCTGCAGCGAACGCAGCGCCAGCGAAGACGGAGGTGCGGTACGT
GACCGAGGTGCCCAGCAGTCTGAAGCAACTGGCGCGCCTCGTGGTCCGTG
GATTCTATTCCCTGGAGGATGCGCTTATCATCGACATGCTGGTGCGGAAT
CCCTGCATGAAGGAGGACGACATCGGCGAGCTGTTGCGCTTCGAGAAGAA
GCAGTTAAGGGCCCGGATAACCACGCTGCGCACCGACAAGTTCATCCAGA
TCAGGCTTAAAATGGAAACGGGGCCGGATGGTAAGGCGCAGAAGGTCAAT
TACTACTTCATCAACTACAAGACCTTCGTGAACGTGGTGAAGTACAAGCT
GGATCTCATGCGCAAGCGTATGGAGACGGAGGAGCGTGATGCCACCAGTA
GAGCAAGTTTTAAGTGCTCTTCGTGTTCCAAAACATTCACGGACCTCGAA
GCGGACCAGCTGTTCGACATGGCCACGCTGGAGTTCCGGTGCACCTTCTG
CGGCAGTTCCGTGGAGGAGGACAGCGCCGCCATGCCCAAGAAAGACTCCC
GCCTAATGCTAGCGCACTTCAACGAGCAGCTGCAGCCACTGTACGACCTG
CTCCGTGAGGTGGAGGGCATCAAGCTGGCGCCAGAGGTGCTCGAACCGGA
GCCCGTGGACATCGACACCATTCGAGGACTGAACAAACCCAACGCCACGC
GACCGGACGGCATGGCGTGGTCGGGTGAGGCGACGAGAAACCAGGGCTTT
GCCGTGGAGGAAACTCGTGTGGACGTCACCATTGGCGGCGACGACACCTC
GGATGCGGTGATTGAGCGCAAGTCGCGCCCCATTTGGATGACAGAGAGCA
CTGTGATAACCGACACGGATGCTGCCGATGGCGCGGCCGATGCGGTGCAG
ACGGCAAGCGGATCTGGGCATCGCAACCGAAAGGAAAACGAGGACATCAT
GTCCGTGCTGCTGCAGCATGAGAAGCAGCCGGGCCAGAAGGAGCCGCATA
TGAAGGGTATGCGAGTGGGCTCATCGAACGCCAACTCTAGCGATTCCAGC
GACGACGAAAAGGACATCGAAAATTCCAAGATTCCTGATGTCGACTTCGA
CAATTATATCAACTCAGATTCCGCGGAGGAGGACGACGATGTGCCCACTG
TGCTAGTGGCTGGACGACCGCATCCGCTCGACCAACTGGACGACAACCTG
ATAGCCCAGATGACGCCGCAGGAGAAGGAGAACTACATACACGTATACCA
GCAGCACTACAGCCATATATTCGAATGAGGGCGTCTGCAATTAGCCACGA
TTTCTACGTTTTCCACGAGTTTCCCATCTCACGCATAGAGTCATTGTAAT
TTAAGTTACCCACTAGTTCGAGCGAATGTGTACAAATGAAATGCGTATAA
AAATGTGCATAAACAAAAAAAAAAAAAAAAAAAA

GH11150.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEalpha-RA 1791 TfIIEalpha-RA 25..1641 1..1617 8085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11673194..11674301 177..1284 5405 99.2 Plus
chr3L 24539361 chr3L 11674370..11674699 1285..1614 1650 100 Plus
chr3L 24539361 chr3L 11672940..11673120 1..181 875 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11682300..11683407 177..1284 5540 100 Plus
3L 28110227 3L 11683476..11683808 1285..1617 1665 100 Plus
3L 28110227 3L 11682046..11682226 1..181 890 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11675400..11676507 177..1284 5540 100 Plus
3L 28103327 3L 11676576..11676908 1285..1617 1665 100 Plus
3L 28103327 3L 11675146..11675326 1..181 890 99.4 Plus
Blast to na_te.dros performed 2019-03-15 12:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 1844..1908 421..359 113 66.2 Minus

GH11150.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:35:05 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11672940..11673116 1..177 99 -> Plus
chr3L 11673195..11674301 178..1284 99 -> Plus
chr3L 11674370..11674699 1285..1614 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:34:59 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 1..1290 189..1478 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:58 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 1..1290 189..1478 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:07 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 1..1290 189..1478 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:17 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 1..1290 189..1478 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:04:21 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 1..1290 189..1478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:58:05 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 21..1634 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:58 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 21..1634 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:07 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 9..1622 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:17 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 10..1623 1..1614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:04:21 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEalpha-RA 9..1622 1..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:05 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11683476..11683805 1285..1614 100   Plus
3L 11682046..11682222 1..177 100 -> Plus
3L 11682301..11683407 178..1284 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:05 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11683476..11683805 1285..1614 100   Plus
3L 11682046..11682222 1..177 100 -> Plus
3L 11682301..11683407 178..1284 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:05 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11683476..11683805 1285..1614 100   Plus
3L 11682046..11682222 1..177 100 -> Plus
3L 11682301..11683407 178..1284 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:07 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11675146..11675322 1..177 100 -> Plus
arm_3L 11675401..11676507 178..1284 100 -> Plus
arm_3L 11676576..11676905 1285..1614 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:50 Download gff for GH11150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11675401..11676507 178..1284 100 -> Plus
3L 11676576..11676905 1285..1614 100   Plus
3L 11675146..11675322 1..177 100 -> Plus

GH11150.hyp Sequence

Translation from 188 to 1477

> GH11150.hyp
MSSTSTAAANAAPAKTEVRYVTEVPSSLKQLARLVVRGFYSLEDALIIDM
LVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKA
QKVNYYFINYKTFVNVVKYKLDLMRKRMETEERDATSRASFKCSSCSKTF
TDLEADQLFDMATLEFRCTFCGSSVEEDSAAMPKKDSRLMLAHFNEQLQP
LYDLLREVEGIKLAPEVLEPEPVDIDTIRGLNKPNATRPDGMAWSGEATR
NQGFAVEETRVDVTIGGDDTSDAVIERKSRPIWMTESTVITDTDAADGAA
DAVQTASGSGHRNRKENEDIMSVLLQHEKQPGQKEPHMKGMRVGSSNANS
SDSSDDEKDIENSKIPDVDFDNYINSDSAEEDDDVPTVLVAGRPHPLDQL
DDNLIAQMTPQEKENYIHVYQQHYSHIFE*

GH11150.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEalpha-PA 429 CG10415-PA 1..429 1..429 2208 100 Plus

GH11150.pep Sequence

Translation from 188 to 1477

> GH11150.pep
MSSTSTAAANAAPAKTEVRYVTEVPSSLKQLARLVVRGFYSLEDALIIDM
LVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKA
QKVNYYFINYKTFVNVVKYKLDLMRKRMETEERDATSRASFKCSSCSKTF
TDLEADQLFDMATLEFRCTFCGSSVEEDSAAMPKKDSRLMLAHFNEQLQP
LYDLLREVEGIKLAPEVLEPEPVDIDTIRGLNKPNATRPDGMAWSGEATR
NQGFAVEETRVDVTIGGDDTSDAVIERKSRPIWMTESTVITDTDAADGAA
DAVQTASGSGHRNRKENEDIMSVLLQHEKQPGQKEPHMKGMRVGSSNANS
SDSSDDEKDIENSKIPDVDFDNYINSDSAEEDDDVPTVLVAGRPHPLDQL
DDNLIAQMTPQEKENYIHVYQQHYSHIFE*

GH11150.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25281-PA 429 GF25281-PA 1..429 1..429 2068 91.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15520-PA 429 GG15520-PA 1..429 1..429 2279 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14864-PA 438 GH14864-PA 17..438 15..429 1931 90.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEalpha-PA 429 CG10415-PA 1..429 1..429 2208 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13717-PA 431 GI13717-PA 15..431 15..429 1970 91.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16279-PA 303 GL16279-PA 1..303 128..429 1405 90.4 Plus
Dper\GL16278-PA 88 GL16278-PA 16..62 17..63 239 95.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10304-PA 429 GA10304-PA 16..429 17..429 2003 93 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25289-PA 429 GM25289-PA 1..429 1..429 2300 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14320-PA 429 GD14320-PA 1..429 1..429 2300 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14060-PA 431 GJ14060-PA 15..431 15..429 1949 89 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10470-PA 432 GK10470-PA 18..432 15..429 1915 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21836-PA 429 GE21836-PA 1..429 1..429 2279 97.9 Plus