Clone GH11210 Report

Search the DGRC for GH11210

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:112
Well:10
Vector:pOT2
Associated Gene/Transcriptcrc-RB
Protein status:GH11210.pep: gold
Preliminary Size:2266
Sequenced Size:2250

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8669 2001-01-01 Release 2 assignment
CG8669 2001-11-09 Blastp of sequenced clone
CG8669 2003-01-01 Sim4 clustering to Release 3
crc 2008-04-29 Release 5.5 accounting
crc 2008-08-15 Release 5.9 accounting
crc 2008-12-18 5.12 accounting

Clone Sequence Records

GH11210.complete Sequence

2250 bp (2250 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069092

> GH11210.complete
AGAATCTTTGCATTGAGCATTAAAGCGGATACCGCTTTCCCACTTTGTGA
AGTTGGCTGGCAGCGAAGGCCATTCGCACCTCTAACTTAAGCCACAGGGG
AAAACAAAACGGCTAGATTCCACTTGAGGTGATCATCGATTGGAAACTAT
ATGTAGCCGAACCTCGGAAAATCTGCAGATTCACGGGACAATCGCGACCA
CCTGAAAGTTCGAGTGCGGGCTCCAAGGACTTTGTTAGCATGATACCACA
CTGTGGATACCGTTACATGTGGAACCGTGAAATTGTGATAAACTCGCAAA
AGTTGGTTAAACGACGCTAAGCAGGAACTTCAGATTTTCAACCACGCCGA
CCACTTTGCGGCAGCAGTTGAATCCTACGGACAGAAATCCAGCAACCGAA
GGACAGACGCACAATAAAAACCAATCACTCAAATCCCTTCATGCAATTTA
AAACTTTTAATACTTTTCATATACGTTTTACCACGTTTTTACCGTTTTTA
CCACGTACCGTTTTTGTTTTTTATTTAATAAGAAAATGTGGTGAACTTAT
ACCAGCCTAACCTACCCATTTTCCAGCTTTTTATTTGTACTTTCTAATTT
GATTCTGTGATTTCTTACTTTCATTTGGAAATTTGATTATACATTACTGC
TAATATTTTTTCTATCTTCATAATATAAGGAATTCTCCTTTTAAATAGCT
ATTGTTTAAAACTCGATTATTGTTAGGTTTAGGTAAGTCTACTCATTTGG
GGGTATATATATACCATTTACCGTCTTAATTTTTTTTTTTAATAAAAACT
TGTGGGTTAACACTTAATATTCGACAAAACGATTCACTGCTGCCGCAAAA
ATGAGCACCTATATATTTATGCAAGCATATGAATGTCTTTTGGACCAAAA
GGCAACGTTGAACTGCATCGATTATGACAGTAACAGCTTTCAGCCGAACA
TTAATGTTATAACTCAGGCCATAGTACCCGCAAACAAAGTACAATTCGGT
GCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCGCTGATTACCAGCTCAA
TGATGGCCCATCCCTTATTCTACAGCAATTAACGCCGCCGCAGTCTCCGC
CTCAATTCGATGCTTACAAACAGGCGGGCGATGCACAGCCAAAACCCGTG
CTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATACTCCTGATGTTACACA
CGCAGCATCTGCCACGCCCTTTAACTTTACCAACTGGGTAGGCGGCAGCG
AAATTGCCCGAGAGAACCAACTGGTCGATGATATCGTCAATATGCGTGCT
AAGGAGCTCGAATTGTCCACGAACTGGCAGCAGCTCAATGAGGACTGCGA
GTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGCACAGGAAGCGGAGTGT
GCAGCAGCATCGCCGACGCCGACGAGGACTGGGTTCCAGAGCTTATCAGC
AGCTCCTCCTCGCCAGCTCCTACAACCATCGAGCAGTCTGCGTCCCAGCC
AAAAAAGCGTACTCGCACTTACGGGCGCGGTGTAGAGGATCGAAAGATCA
GGAAAAAGGAGCAGAACAAGAACGCTGCCACACGATATCGCCAGAAAAAG
AAACTTGAAATGGAGAATGTGCTGGGCGAGGAGCATGTGCTGTCTAAAGA
AAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGGCACAACGAAATGCGCT
ATCTGCGCCAGCTGATTCGAGAGTTCTACCATGAACGCAAGCGCTAGGCT
TTATTTTCTTTGAAATCAATTTTATCGTCGTTTGCAAAGTTATTGTTATA
GTTAAACCCAAGCCTCTTCCATAAACTAATTGTCATCATAATGTTTCAAT
GTAATACTATCAATAACAATCTCCGGGTTGCCCAAAATCTACAAATCACC
AAAGTACGCAGCCTGTCCTTTGTCCTACATTTTTGGCACTAATGACGAGT
CTCTGAATTCGGAAATATTTGTTGCCAGTGGGGCCTAAAGGCGACCCCAT
ATCCCAAGCAGCACGGTCCAATGTAAAAACACATTAATTGAAAAGCTCAT
TGATTTGTTTTTCTGCAAATCGGACAGTGTTGCGGCTGCTGTGCTATTTC
AAAAACACTTATATTTTTAATCTGGTAGCATCTCGAAAGATGTAGATTTA
TTTTAATGTTTCATTATTTTTTTCATATTCAACATTGATCAGTAATAAAT
CAAAGGGTTTTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH11210.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
cryptocephal-RB 2800 cryptocephal-RB 527..2746 1..2220 11100 100 Plus
cryptocephal.s 3189 cryptocephal.s 527..2746 1..2220 11100 100 Plus
cryptocephal-RA 2193 cryptocephal-RA 657..1996 881..2220 6700 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21316980..21318023 1174..2217 5175 99.7 Plus
chr2L 23010047 chr2L 21313154..21314034 1..881 4390 99.9 Plus
chr2L 23010047 chr2L 21316622..21316915 881..1174 1470 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319530 1174..2220 5235 100 Plus
2L 23513712 2L 21314658..21315538 1..881 4405 100 Plus
2L 23513712 2L 21318126..21318419 881..1174 1470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319530 1174..2220 5235 100 Plus
2L 23513712 2L 21314658..21315538 1..881 4405 100 Plus
2L 23513712 2L 21318126..21318419 881..1174 1470 100 Plus
Blast to na_te.dros performed 2019-03-16 13:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 2458..2614 740..578 134 58.2 Minus
micropia 5461 micropia DMDM11 5461bp 4724..4827 2202..2108 128 65.4 Minus
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 792..969 578..740 117 59.1 Plus
blood 7410 blood BLOOD 7410bp 6833..7004 626..796 117 55.7 Plus

GH11210.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:51:10 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21313154..21314034 1..881 97 -> Plus
chr2L 21316623..21316915 882..1174 100 -> Plus
chr2L 21316981..21318023 1175..2217 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:05 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1..897 851..1747 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:20 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1..897 851..1747 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:49 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1..897 851..1747 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:55 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1..897 851..1747 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:24:58 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1..897 851..1747 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:23 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 293..2509 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:20 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 293..2509 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:49 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 299..2515 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:56 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 293..2509 1..2217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:58 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 299..2515 1..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:51:10 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21314658..21315538 1..881 100 -> Plus
2L 21318127..21318419 882..1174 100 -> Plus
2L 21318485..21319527 1175..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:51:10 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21314658..21315538 1..881 100 -> Plus
2L 21318127..21318419 882..1174 100 -> Plus
2L 21318485..21319527 1175..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:51:10 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21314658..21315538 1..881 100 -> Plus
2L 21318127..21318419 882..1174 100 -> Plus
2L 21318485..21319527 1175..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:49 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21314658..21315538 1..881 100 -> Plus
arm_2L 21318127..21318419 882..1174 100 -> Plus
arm_2L 21318485..21319527 1175..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:43 Download gff for GH11210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21314658..21315538 1..881 100 -> Plus
2L 21318127..21318419 882..1174 100 -> Plus
2L 21318485..21319527 1175..2217 100   Plus

GH11210.pep Sequence

Translation from 850 to 1746

> GH11210.pep
MSTYIFMQAYECLLDQKATLNCIDYDSNSFQPNINVITQAIVPANKVQFG
ASSDAASLPSAADYQLNDGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPV
LVKAEQKVQCYTPDVTHAASATPFNFTNWVGGSEIARENQLVDDIVNMRA
KELELSTNWQQLNEDCESQASSSLDSRSTGSGVCSSIADADEDWVPELIS
SSSSPAPTTIEQSASQPKKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKK
KLEMENVLGEEHVLSKENEQLRRTLQERHNEMRYLRQLIREFYHERKR*

GH11210.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14324-PA 296 GF14324-PA 1..296 1..298 908 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21297-PA 292 GG21297-PA 1..292 1..298 1372 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13312-PA 319 GH13312-PA 1..313 1..297 693 55.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
crc-PB 298 CG8669-PB 1..298 1..298 1539 100 Plus
crc-PF 372 CG8669-PF 85..372 11..298 1487 100 Plus
crc-PE 381 CG8669-PE 94..381 11..298 1487 100 Plus
crc-PA 381 CG8669-PA 94..381 11..298 1487 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12209-PA 299 GI12209-PA 1..299 1..298 711 55.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26659-PA 308 GL26659-PA 1..308 1..298 850 64.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29007-PA 308 GA29007-PA 1..308 1..298 850 64.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16908-PA 259 GM16908-PA 3..259 42..298 1230 91.1 Plus
Dsec\GM23408-PA 363 GM23408-PA 75..363 1..298 1229 80.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24317-PA 299 GD24317-PA 1..299 1..298 1457 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17848-PA 310 GJ17848-PA 1..310 1..298 734 58.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18737-PA 302 GK18737-PA 1..301 1..297 837 57.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12912-PA 381 GE12912-PA 83..381 1..298 1335 84.6 Plus

GH11210.hyp Sequence

Translation from 850 to 1746

> GH11210.hyp
MSTYIFMQAYECLLDQKATLNCIDYDSNSFQPNINVITQAIVPANKVQFG
ASSDAASLPSAADYQLNDGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPV
LVKAEQKVQCYTPDVTHAASATPFNFTNWVGGSEIARENQLVDDIVNMRA
KELELSTNWQQLNEDCESQASSSLDSRSTGSGVCSSIADADEDWVPELIS
SSSSPAPTTIEQSASQPKKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKK
KLEMENVLGEEHVLSKENEQLRRTLQERHNEMRYLRQLIREFYHERKR*

GH11210.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
crc-PB 298 CG8669-PB 1..298 1..298 1539 100 Plus
crc-PF 372 CG8669-PF 85..372 11..298 1487 100 Plus
crc-PE 381 CG8669-PE 94..381 11..298 1487 100 Plus
crc-PA 381 CG8669-PA 94..381 11..298 1487 100 Plus