Clone GH11218 Report

Search the DGRC for GH11218

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:112
Well:18
Vector:pOT2
Associated Gene/TranscriptCG18266-RA
Protein status:GH11218.pep: gold
Preliminary Size:2200
Sequenced Size:1830

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18266 2001-01-01 Release 2 assignment
CG18266 2002-05-15 Blastp of sequenced clone
CG18266 2003-01-01 Sim4 clustering to Release 3
CG18266 2008-04-29 Release 5.5 accounting
CG18266 2008-08-15 Release 5.9 accounting
CG18266 2008-12-18 5.12 accounting

Clone Sequence Records

GH11218.complete Sequence

1830 bp (1830 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118771

> GH11218.complete
CCGACACGACATATCGTCTCGAAAACTCGAGAGAAATCTTTCCCAATTCA
ATTTCCACATCCCCCACTTTTGTCGATCTTTCGCAGACTGCCGGAATGGC
CTTTGTAGCGCGTCGGAGTAGCGATGGCTCGGTGGTGGATCGTCAGCAGG
TGTCTGGTCGGGAAAAAGTACGTCCAGCTTCCCAGTCGGACATTAGTGAT
GAGGATTCGGAGTCGCTGCTGGGCTATACAAACCACACCTATGGGGCTCC
CACAGTGAGGTATGTTGGCCAGGGTGAAGATCGTGAAGCGGTGGAACCTC
AGCTAGATTATGAGGATTTTGGGGATTCTCTGGGGGATCATGCCGACAAT
TCGGAAAGCGAGACGGATTCCATTTTGAGTTTCTGCAAGGAACTGGATGA
GGAGGAGGCCAACGATGCATTGCTAAATGGCAGAATGAGCTTCACAGACG
AGAAGGCGAAAGTTGAGGATAAAGCGAATGCAGATGATGTGTTTCACCGG
GTCATGAACAAAGGCGATGAGGCGGCTGCCACGGACACGGAGACCGTGAT
GAACTTTGATCACGATGTGCAGAGCCTTAGCTCCTTAGGCAGCTGCACGC
CAACGGTGACGCAACGCGGTGAGGATGTCGACAATTTGGACAATATCAGC
GGCAGGACATTTTTCAAGGAGGAAAAATCGCACAGCATTAACACCAGGAC
CTTTTGCAAGGATAACAATCTGGATGCGCTGAGCGGCAGGACCTTCTACA
AGCAGGCCTCCGTAAAGGAGACTAACCAGGGCCAGATTTCCAGTCGGACA
TACAGCCTGAGTAGCTCGGGCAACAATCAAAACCATGACGCATCCTCGAT
GTCCACCTGCAGCTGGTCGGACATGTACCGCGGTGCTCTGCAGTCCACCG
ATGGATGCACCGGTATGCCCCCTCTGAGCCTGGCCAGCGTCGTCTCTGAC
TCGTCCACGTGCTACAAGCAGCTGGAGGAGCATAAGGAACGCCCTGGCCC
GCAGGCCTTCGAGGACTGGAAGGCGCGAAAGGCCGCCGAGAAGCAGAAGA
ATCTGCTGGCTGCCAAACAGGAGCGCGAAAAGCGGGAGGCGGAGGCAGCA
CTGCGACAGAAATATGCCCAGGAGCACTTCCAGGAGTGGTGTCGTCGCAA
GGAGGAGCAGCAGCAGCAGCAGCGGCAAAAGCAAAAGAAATCCTCGACCT
CTAGCTCCAGTTTGGGATCGGTTTCCAGCTCTAGCACCGCCCCTACAAGG
AAGGTGTCTCCCGAGAACACAAAGAACCGTCTGCAGAAGTGGGAGCAAGC
CAAGCGGGAGCAGCAGCAACAGGAAAAACAACGCCTGATCCGACTGCAGT
GCAACAAGCAGAAACTGGAGGAGGAACGCCGTCAGCGCCGCCAAGGCGCC
TGGCAGAACTGGATGAAACAGGTGGACAAGCGGGCCAAGCCGGTTCCCCT
CAATCAGGGCTTTGACACGCTGCGCGGTACCATATCCAACATCTACATCA
ATCCCGTGCAATGGGTGTCCAATATCGATCCGCAGGATTCGGGGCGCAGT
CGTTAGAATTCCTTGGAGCGCTCTCACATTCGTTAGTCCATCGCCATTTC
ACGCTGAAATGCATGCAAGACCTATGGGGACGACTGGTGCAGGAGGACGG
GAGGAGATCGCCTCGGTTGCTGGGCCCGCAAAATGATTTTAATTCTACTA
CTACACATTATACACGAATTTTGATTAGTGGCGGTGGATCCCACTTTGTT
TTACCTTCGCAAGTTACTCAATAAACTACAAGATCGGCAGCTTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH11218.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 12..1804 1..1793 8965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5595942..5597734 1..1793 8965 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5596844..5598636 1..1793 8965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5596844..5598636 1..1793 8965 100 Plus
Blast to na_te.dros performed 2019-03-16 14:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1171 1276..1394 157 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6859 1273..1394 143 59.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3295..3351 1309..1365 132 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6821 1284..1377 130 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2421 1266..1377 127 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2405 1309..1394 125 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2535 1156..1386 122 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6890 1266..1386 122 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6826 1309..1394 121 65.6 Plus
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 153..221 1207..1140 117 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6914 1266..1386 114 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6925 1273..1388 114 60.3 Plus

GH11218.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:34:43 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5595942..5597734 1..1794 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:06 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 96..1556 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:47 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 96..1556 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:22:48 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 96..1556 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:24 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 96..1556 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:28:51 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 96..1556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:45 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 12..1804 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:47 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 12..1804 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:22:48 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 12..1804 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:24 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 12..1804 1..1793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:51 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 12..1804 1..1793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:43 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5596844..5598636 1..1794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:43 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5596844..5598636 1..1794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:43 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5596844..5598636 1..1794 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:22:48 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5596844..5598636 1..1794 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:45 Download gff for GH11218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5596844..5598636 1..1794 99   Plus

GH11218.hyp Sequence

Translation from 2 to 1555

> GH11218.hyp
DTTYRLENSREIFPNSISTSPTFVDLSQTAGMAFVARRSSDGSVVDRQQV
SGREKVRPASQSDISDEDSESLLGYTNHTYGAPTVRYVGQGEDREAVEPQ
LDYEDFGDSLGDHADNSESETDSILSFCKELDEEEANDALLNGRMSFTDE
KAKVEDKANADDVFHRVMNKGDEAAATDTETVMNFDHDVQSLSSLGSCTP
TVTQRGEDVDNLDNISGRTFFKEEKSHSINTRTFCKDNNLDALSGRTFYK
QASVKETNQGQISSRTYSLSSSGNNQNHDASSMSTCSWSDMYRGALQSTD
GCTGMPPLSLASVVSDSSTCYKQLEEHKERPGPQAFEDWKARKAAEKQKN
LLAAKQEREKREAEAALRQKYAQEHFQEWCRRKEEQQQQQRQKQKKSSTS
SSSLGSVSSSSTAPTRKVSPENTKNRLQKWEQAKREQQQQEKQRLIRLQC
NKQKLEEERRQRRQGAWQNWMKQVDKRAKPVPLNQGFDTLRGTISNIYIN
PVQWVSNIDPQDSGRSR*

GH11218.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 486 CG18266-PA 1..486 32..517 2523 100 Plus
CG14011-PC 388 CG14011-PC 139..388 252..506 333 31.2 Plus
CG14011-PB 388 CG14011-PB 139..388 252..506 333 31.2 Plus
CG14011-PA 388 CG14011-PA 139..388 252..506 333 31.2 Plus
CG7251-PB 321 CG7251-PB 47..316 261..508 311 31.7 Plus

GH11218.pep Sequence

Translation from 95 to 1555

> GH11218.pep
MAFVARRSSDGSVVDRQQVSGREKVRPASQSDISDEDSESLLGYTNHTYG
APTVRYVGQGEDREAVEPQLDYEDFGDSLGDHADNSESETDSILSFCKEL
DEEEANDALLNGRMSFTDEKAKVEDKANADDVFHRVMNKGDEAAATDTET
VMNFDHDVQSLSSLGSCTPTVTQRGEDVDNLDNISGRTFFKEEKSHSINT
RTFCKDNNLDALSGRTFYKQASVKETNQGQISSRTYSLSSSGNNQNHDAS
SMSTCSWSDMYRGALQSTDGCTGMPPLSLASVVSDSSTCYKQLEEHKERP
GPQAFEDWKARKAAEKQKNLLAAKQEREKREAEAALRQKYAQEHFQEWCR
RKEEQQQQQRQKQKKSSTSSSSLGSVSSSSTAPTRKVSPENTKNRLQKWE
QAKREQQQQEKQRLIRLQCNKQKLEEERRQRRQGAWQNWMKQVDKRAKPV
PLNQGFDTLRGTISNIYINPVQWVSNIDPQDSGRSR*

GH11218.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15574-PA 508 GF15574-PA 1..507 1..485 1202 54.4 Plus
Dana\GF14313-PA 396 GF14313-PA 205..395 273..474 268 33.5 Plus
Dana\GF14312-PA 300 GF14312-PA 44..284 225..473 263 30.5 Plus
Dana\GF14333-PA 314 GF14333-PA 55..310 242..477 206 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25087-PA 512 GG25087-PA 1..512 1..486 1722 70.1 Plus
Dere\GG24293-PA 296 GG24293-PA 180..292 368..478 252 47.8 Plus
Dere\GG24294-PA 400 GG24294-PA 210..399 273..474 227 31.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11037-PA 480 GH11037-PA 1..477 1..482 569 34.3 Plus
Dgri\GH10700-PA 342 GH10700-PA 105..338 253..481 230 32.4 Plus
Dgri\GH10701-PA 394 GH10701-PA 154..390 249..478 222 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 486 CG18266-PA 1..486 1..486 2523 100 Plus
CG14011-PC 388 CG14011-PC 139..388 221..475 333 31.2 Plus
CG14011-PB 388 CG14011-PB 139..388 221..475 333 31.2 Plus
CG14011-PA 388 CG14011-PA 139..388 221..475 333 31.2 Plus
CG7251-PB 321 CG7251-PB 47..316 230..477 311 31.7 Plus
CG7251-PA 321 CG7251-PA 47..316 230..477 311 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17555-PA 515 GI17555-PA 1..512 1..482 726 38 Plus
Dmoj\GI11252-PA 328 GI11252-PA 95..322 253..481 280 33.3 Plus
Dmoj\GI11257-PA 391 GI11257-PA 151..381 249..474 230 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26370-PA 477 GL26370-PA 1..475 1..484 504 35.1 Plus
Dper\GL26645-PA 622 GL26645-PA 388..621 260..474 235 33.3 Plus
Dper\GL26646-PA 362 GL26646-PA 191..361 298..474 211 32.8 Plus
Dper\GL14937-PA 521 GL14937-PA 377..520 337..474 201 36.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14863-PA 477 GA14863-PA 1..475 1..484 505 34.6 Plus
Dpse\GA12696-PA 362 GA12696-PA 191..361 298..474 234 34.6 Plus
Dpse\GA29002-PA 611 GA29002-PA 435..610 305..474 226 36.3 Plus
Dpse\GA22206-PA 510 GA22206-PA 334..509 305..474 224 33.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18563-PA 477 GM18563-PA 1..477 1..486 2146 86.9 Plus
Dsec\GM18011-PA 385 GM18011-PA 165..384 250..474 248 31.3 Plus
Dsec\GM18010-PA 322 GM18010-PA 46..319 229..479 243 32.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23354-PA 485 GD23354-PA 1..485 1..486 2208 88.5 Plus
Dsim\GD22643-PA 321 GD22643-PA 45..316 229..477 238 32.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15552-PA 537 GJ15552-PA 1..530 1..478 714 38.5 Plus
Dvir\GJ12378-PA 403 GJ12378-PA 155..395 249..474 280 36.7 Plus
Dvir\GJ12367-PA 342 GJ12367-PA 94..338 240..479 257 32.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14687-PA 499 GK14687-PA 1..499 1..484 617 37 Plus
Dwil\GK15429-PA 332 GK15429-PA 54..324 224..477 348 33.6 Plus
Dwil\GK14686-PA 385 GK14686-PA 166..384 250..474 294 36.2 Plus
Dwil\GK18131-PA 512 GK18131-PA 41..201 311..473 171 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25537-PA 508 GE25537-PA 1..508 1..486 1645 69.5 Plus
Dyak\GE18990-PA 386 GE18990-PA 159..385 242..474 260 30.3 Plus
Dyak\GE18989-PA 317 GE18989-PA 48..310 232..475 220 32.5 Plus