Clone GH11223 Report

Search the DGRC for GH11223

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:112
Well:23
Vector:pOT2
Associated Gene/TranscriptCG33120-RA
Protein status:GH11223.pep: gold
Preliminary Size:2200
Sequenced Size:2296

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10599 2001-01-01 Release 2 assignment
CG33120 2001-09-19 Blastp of sequenced clone
CG33120 2003-01-01 Sim4 clustering to Release 3
CG33120 2008-04-29 Release 5.5 accounting
CG33120 2008-08-15 Release 5.9 accounting
CG33120 2008-12-18 5.12 accounting

Clone Sequence Records

GH11223.complete Sequence

2296 bp (2296 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058338

> GH11223.complete
GAGAATCGAACGTGTGAGCTTCTGGAAAAAAATCCAAGCCAGATCGGGGT
ATCGGAGGTGTACATACTATAGTGCAGCTATAATTCGGATTTCTTAGAAG
GCAGTTTCTGCAAACGAACGAGTCTGGGAAAATGGAAAGTTTCTGGCAGG
AAGTGAAGTCTCTGCTGAAGACCGTCTTCTGCTTTGTGGTGGCTATGATG
CTAGTGCCTTTGCTGATGTTATCATTCCTGTGTGCTCACTTTGGCAACGA
ACTATCCAACTATGTGCTGAGCATCAAGTACCCGAACCTGACCATCTCAA
AGTCGAAGAAGATCCGCACCTTAATCGACACGCCGAAGAATGCGGGCGTA
TTTCACTTCCTGCTGCAAGTGGAGGGCGACTGTGACTTCGAGCGGATACG
GATGGCCTATGCCCAGCATCTGACTGACCTGAGGGACAAGACCGGGATGC
TCAGGTTCCCCAAGCTGCGTCAAAAACTTGTCACCTGTTGGGGGCATTAT
GCGTGGGTGAATGACAGCAGCGGCTTCAACATCAACAACCACGTCTTACT
CAGCACCCACAAGTATCGAGGTCGTCCGGTTAGCGAATCAAATATTCAGG
AGTATGTCAGCGAGCTGGCCACGAAGTACATCCCATCCGATCTCCCCCAG
TGGCAGGTGATCGTGATCCCCAACTCGGATAGCACACAGCCCTACTACAT
ACTCATTAAGCTGCACCACCTGATAATTGCCGAGGAGGAGGATCTGCATG
TGAGTGAGATGCTCCTGCTTCAGGATCCCCATAAGAAAACCACAATGACC
CTAAGCGATGGATTGGATTGGGACAGTTCGAGTCCAAAACTTTCCCGCTT
TGTGCGAAAGCCGGAACACATAAGCAGACTCATCAATCATATAATCCATC
TTATCATTTGCCGTTGGCAAAAGTTCATCTACGAATTTGAATCTCTTGAA
ACCCCCGATGGTTCAACGTCCAGTGATCAGGTTGGAAACCTAAGCCAGTT
GATGTCGTTGGTCGTAATTGTCCTGGTGAATGTAATTTTGGGCTATATAA
GGAGTCGAACTATGCTTAAGAAACTGAAAAGGCGTTCAGTCAGCTACCGC
AATGAAGTGGGTCGTTTTCAAACAATGCGATTGCTGCTGAATAGGGAGTT
AGATCAAAGAAATCTTAATTGGTCGGTTGCCAGAAATGCGATCTATAAGA
GCATGCAGCCAACTAATTTGGCAAAGGCCTTGACACGTTTCCTTTGGCGT
CTAAATCTAAATCATGTTTTGCTCTTACCCTATCACATTTACTGTGAGTT
TTTGGCTTTCGCTGATGTTCTGATCAAAGGTAAAACTTCCCATACTTCCA
CCTATTGCGCCAGGCTGCACTTGTACGTACCCCTTCTACTTTACGCCCAA
TTGGAGTTTTTCAAAATTATATGGGAACTTTTCCAGGCCCCACGAAACAT
TTACGAAGTGCTTTTCGAACAGCCCACAAAGGAGTTAAACATTTTGCATA
AAAAATCCTATGCGGGCAGGAAAATAGTCTCATTTAGCCGATCAATAAAT
GGCGCCCAACTCAGGACCCGTAATCAGGGTAAATTCAATAGTGATCTCCG
AGAATCCGACTTTAGTTTAACTTGCTTGGCAGGGGCTGTTCACGATTACT
TTAATACGTTCTCAGGTGACTTGAAAGTCCCCAATTACTTGAACACCACT
TGTAGGACCATAGATAAAGGGTATTTCACAGATCGCAGTGGGGATAAATC
TGAAAATATCGGGGGTGTTGTCTTTCTGCAATTGCCTCTAAGGCAACCAG
ACGCAAATCACACCAAAGAACTCCATCAGATTGTTGAACGAATCAGAAAG
CAACAGATCATTATTTACTTAGCGTCTATTGGACAGACCAAGTACAGCCT
TCTCACATCCCTTTTGCCTCACGTAATTACCAAAATATTCATCAACTTTT
TCTCATACAACTTTCCAATCACAATCACTGAAATCTACGGAGCGACTGCT
GAGTTTCAAGCGGCCTGGGGTCAGAATGTCCAGGATGTTCTACTTTTCCG
GCCACCACAATCGAAGACCTGCCTTTCCTTAAATCTTCATCGCTTTGGGG
ACAAATACAGACTGGCTGTGATGGCGGATACCCACCTGGCTCCCGATCAC
ACAGTAATCACCAGATCCTTTGAGCGATATATGGAAACCATCACTCTGTA
ACTTCCTTTCCTCTCTTTTAAGACTGGAGGGCAATCTCTATATACATAAT
GTATGCGAAATAAAAACTATTTATCCAGTAAAAAAAAAAAAAAAAA

GH11223.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33120-RA 2388 CG33120-RA 54..2333 1..2280 11385 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18840157..18841919 2279..517 8800 99.9 Minus
chr2L 23010047 chr2L 18841976..18842264 520..232 1445 100 Minus
chr2L 23010047 chr2L 18843177..18843315 139..1 680 99.3 Minus
chr2L 23010047 chr2L 18843014..18843109 233..138 480 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18841399..18843162 2280..517 8820 100 Minus
2L 23513712 2L 18843219..18843507 520..232 1445 100 Minus
2L 23513712 2L 18844419..18844557 139..1 680 99.3 Minus
2L 23513712 2L 18844256..18844351 233..138 480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18841399..18843162 2280..517 8820 100 Minus
2L 23513712 2L 18843219..18843507 520..232 1445 100 Minus
2L 23513712 2L 18844419..18844557 139..1 680 99.2 Minus
2L 23513712 2L 18844256..18844351 233..138 480 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:57:35 has no hits.

GH11223.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:58:54 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18840157..18841915 521..2279 99 <- Minus
chr2L 18841976..18842264 232..520 100 <- Minus
chr2L 18843016..18843107 140..231 100 <- Minus
chr2L 18843177..18843315 1..139 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:07 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2070 132..2201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:22 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2070 132..2201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:54:33 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2070 132..2201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:07 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2070 132..2201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:19 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2070 132..2201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:47 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2279 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:22 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2279 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:33 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 23..2301 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:08 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 1..2279 1..2279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:19 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG33120-RA 23..2301 1..2279 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:54 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18841400..18843158 521..2279 100 <- Minus
2L 18843219..18843507 232..520 100 <- Minus
2L 18844258..18844349 140..231 100 <- Minus
2L 18844419..18844557 1..139 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:54 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18841400..18843158 521..2279 100 <- Minus
2L 18843219..18843507 232..520 100 <- Minus
2L 18844258..18844349 140..231 100 <- Minus
2L 18844419..18844557 1..139 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:54 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18841400..18843158 521..2279 100 <- Minus
2L 18843219..18843507 232..520 100 <- Minus
2L 18844258..18844349 140..231 100 <- Minus
2L 18844419..18844557 1..139 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:33 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18844258..18844349 140..231 100 <- Minus
arm_2L 18844419..18844557 1..139 99   Minus
arm_2L 18841400..18843158 521..2279 100 <- Minus
arm_2L 18843219..18843507 232..520 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:35 Download gff for GH11223.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18841400..18843158 521..2279 100 <- Minus
2L 18843219..18843507 232..520 100 <- Minus
2L 18844258..18844349 140..231 100 <- Minus
2L 18844419..18844557 1..139 99   Minus

GH11223.pep Sequence

Translation from 131 to 2200

> GH11223.pep
MESFWQEVKSLLKTVFCFVVAMMLVPLLMLSFLCAHFGNELSNYVLSIKY
PNLTISKSKKIRTLIDTPKNAGVFHFLLQVEGDCDFERIRMAYAQHLTDL
RDKTGMLRFPKLRQKLVTCWGHYAWVNDSSGFNINNHVLLSTHKYRGRPV
SESNIQEYVSELATKYIPSDLPQWQVIVIPNSDSTQPYYILIKLHHLIIA
EEEDLHVSEMLLLQDPHKKTTMTLSDGLDWDSSSPKLSRFVRKPEHISRL
INHIIHLIICRWQKFIYEFESLETPDGSTSSDQVGNLSQLMSLVVIVLVN
VILGYIRSRTMLKKLKRRSVSYRNEVGRFQTMRLLLNRELDQRNLNWSVA
RNAIYKSMQPTNLAKALTRFLWRLNLNHVLLLPYHIYCEFLAFADVLIKG
KTSHTSTYCARLHLYVPLLLYAQLEFFKIIWELFQAPRNIYEVLFEQPTK
ELNILHKKSYAGRKIVSFSRSINGAQLRTRNQGKFNSDLRESDFSLTCLA
GAVHDYFNTFSGDLKVPNYLNTTCRTIDKGYFTDRSGDKSENIGGVVFLQ
LPLRQPDANHTKELHQIVERIRKQQIIIYLASIGQTKYSLLTSLLPHVIT
KIFINFFSYNFPITITEIYGATAEFQAAWGQNVQDVLLFRPPQSKTCLSL
NLHRFGDKYRLAVMADTHLAPDHTVITRSFERYMETITL*

GH11223.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20680-PA 692 GF20680-PA 1..692 1..689 3106 84.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21679-PA 428 GG21679-PA 1..325 1..326 1509 94.2 Plus
Dere\GG21679-PA 428 GG21679-PA 323..428 584..689 549 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11569-PA 686 GH11569-PA 1..686 1..689 2733 75.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33120-PA 689 CG33120-PA 1..689 1..689 3593 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17060-PA 690 GI17060-PA 1..690 1..689 2667 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18828-PA 690 GL18828-PA 1..690 1..689 2960 81.7 Plus
Dper\GL19296-PA 289 GL19296-PA 3..287 380..664 1285 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17298-PA 690 GA17298-PA 1..690 1..689 2957 81.4 Plus
Dpse\GA25904-PA 317 GA25904-PA 1..301 358..675 1322 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17057-PA 429 GM17057-PA 1..325 1..325 1710 97.5 Plus
Dsec\GM17057-PA 429 GM17057-PA 324..429 584..689 550 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21804-PA 577 GD21804-PA 1..400 1..400 2097 97.2 Plus
Dsim\GD21804-PA 577 GD21804-PA 400..577 512..689 946 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17312-PA 691 GJ17312-PA 1..691 1..689 2708 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23898-PA 698 GK23898-PA 1..698 1..689 2727 76.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12700-PA 386 GE12700-PA 1..303 1..305 1371 88.9 Plus
Dyak\GE12700-PA 386 GE12700-PA 278..386 581..689 544 93.6 Plus

GH11223.hyp Sequence

Translation from 131 to 2200

> GH11223.hyp
MESFWQEVKSLLKTVFCFVVAMMLVPLLMLSFLCAHFGNELSNYVLSIKY
PNLTISKSKKIRTLIDTPKNAGVFHFLLQVEGDCDFERIRMAYAQHLTDL
RDKTGMLRFPKLRQKLVTCWGHYAWVNDSSGFNINNHVLLSTHKYRGRPV
SESNIQEYVSELATKYIPSDLPQWQVIVIPNSDSTQPYYILIKLHHLIIA
EEEDLHVSEMLLLQDPHKKTTMTLSDGLDWDSSSPKLSRFVRKPEHISRL
INHIIHLIICRWQKFIYEFESLETPDGSTSSDQVGNLSQLMSLVVIVLVN
VILGYIRSRTMLKKLKRRSVSYRNEVGRFQTMRLLLNRELDQRNLNWSVA
RNAIYKSMQPTNLAKALTRFLWRLNLNHVLLLPYHIYCEFLAFADVLIKG
KTSHTSTYCARLHLYVPLLLYAQLEFFKIIWELFQAPRNIYEVLFEQPTK
ELNILHKKSYAGRKIVSFSRSINGAQLRTRNQGKFNSDLRESDFSLTCLA
GAVHDYFNTFSGDLKVPNYLNTTCRTIDKGYFTDRSGDKSENIGGVVFLQ
LPLRQPDANHTKELHQIVERIRKQQIIIYLASIGQTKYSLLTSLLPHVIT
KIFINFFSYNFPITITEIYGATAEFQAAWGQNVQDVLLFRPPQSKTCLSL
NLHRFGDKYRLAVMADTHLAPDHTVITRSFERYMETITL*

GH11223.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33120-PA 689 CG33120-PA 1..689 1..689 3593 100 Plus