Clone GH11283 Report

Search the DGRC for GH11283

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:112
Well:83
Vector:pOT2
Associated Gene/TranscriptNmda1-RC
Protein status:GH11283.pep: gold
Sequenced Size:1522

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3798 2002-11-11 Blastp of sequenced clone
Nmda1 2008-04-29 Release 5.5 accounting
Nmda1 2008-08-15 Release 5.9 accounting
Nmda1 2008-12-18 5.12 accounting

Clone Sequence Records

GH11283.complete Sequence

1522 bp (1522 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001413

> GH11283.complete
GCCACAACAAACGAGACGGTGCCGAAGTTTCTCAGGCATTACTATAGTGG
CAAATTGATTGATAATTAAAGTTGCATGCCACCAAAGGTGTGCACATTTC
TTAGACACTAATTAAATTAGCTAATGATTGCTTATCATCGTGTCTTTGCA
GTTTACTCCACAGCGGTTTCGGAATTACATAGAAATCAGAGCGAAGTCCC
TCGAGAATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAATACCAAGATCC
CAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATG
GTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGC
TACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGG
ACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAAC
CACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAG
CCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCGGATTCATACG
TAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACTTTTGGAGCTG
TTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGCCAGGAATAAC
ATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTC
TATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACGAACTTCATAT
TCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCA
ACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGC
GGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAGTACGACTTTA
CTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTC
GGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACACTGGTGTACGC
CTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTACGACACACAGT
TAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGAGGAGTACATC
TTTGCGGCACTAAACCTCTACCTGGACATCATCAATATCTTCATGTACAT
TCTGACTATAATCGGCGCATCGCGCGACTAAGTTCCGCTCTATTTCCAAA
TATTGTTTGCAGCTTAATCGGGTTATTCAGTAACCTGGAATACACGAATA
TTGTTGTCGCGTAATCTCATCGGTGTGCTCCCCCAGTGGAGGTAATCTTC
AACTAACGAATTACTCAAATACTTACAAATCTATCTACTTCGTGTTGTGT
TTGCCCATTTTCCCCGTTTCCTTCTAGTTCTAAATGTCAACTAAGGCTAT
ATGAACTACTTACTTTTTGTTATGTATGTTTTATTGTTGCTTAAGTTGAG
GCGCAAACCAAGTGGATATTTCCAAATTTAAAAATAAAAAAATTATATAT
ATGTAAAAAAAAAAAAAAAAAA

GH11283.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RE 1745 Nmda1-RE 1..1505 1..1505 7510 99.9 Plus
Nmda1-RC 1945 Nmda1-RC 250..1605 150..1505 6780 100 Plus
Nmda1-RF 2246 Nmda1-RF 646..1906 245..1505 6305 100 Plus
Nmda1-RF 2246 Nmda1-RF 210..306 150..246 485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8764631..8765315 1504..820 3425 100 Minus
chr2R 21145070 chr2R 8765683..8766011 573..245 1630 99.7 Minus
chr2R 21145070 chr2R 8765370..8765621 823..572 1260 100 Minus
chr2R 21145070 chr2R 8766516..8766666 151..1 740 99.3 Minus
chr2R 21145070 chr2R 8766352..8766441 239..150 450 100 Minus
chr2R 21145070 chr2R 8762588..8762934 1165..819 400 74.4 Minus
chr3R 27901430 chr3R 9977842..9977979 1151..1014 240 78.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12877331..12878016 1505..820 3430 100 Minus
2R 25286936 2R 12878384..12878712 573..245 1645 100 Minus
2R 25286936 2R 12878071..12878322 823..572 1260 100 Minus
2R 25286936 2R 12879223..12879373 151..1 740 99.3 Minus
2R 25286936 2R 12879052..12879148 246..150 485 100 Minus
2R 25286936 2R 12875289..12875635 1165..819 415 74.6 Minus
3R 32079331 3R 14152992..14153129 1151..1014 240 78.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12878530..12879215 1505..820 3430 100 Minus
2R 25260384 2R 12879583..12879911 573..245 1645 100 Minus
2R 25260384 2R 12879270..12879521 823..572 1260 100 Minus
2R 25260384 2R 12880422..12880572 151..1 740 99.3 Minus
2R 25260384 2R 12880251..12880347 246..150 485 100 Minus
2R 25260384 2R 12876488..12876777 1165..876 400 75.8 Minus
3R 31820162 3R 13893823..13893960 1151..1014 240 78.2 Minus
Blast to na_te.dros performed on 2019-03-16 14:01:52 has no hits.

GH11283.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:02:28 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8764662..8765313 822..1473 100 <- Minus
chr2R 8765372..8765620 573..821 100 <- Minus
chr2R 8765684..8766011 245..572 99 -> Minus
chr2R 8766346..8766439 152..244 95 <- Minus
chr2R 8766516..8766666 1..151 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:13 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..975 207..1181 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:06:25 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..975 207..1181 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:09 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 1..975 207..1181 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:56:16 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..975 207..1181 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:27:31 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 1..975 207..1181 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:26:03 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..1504 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:06:24 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..1504 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:09 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..1504 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:56:16 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..1504 1..1504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:31 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 1..1504 1..1504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:02:28 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12879223..12879373 1..151 99   Minus
2R 12878385..12878710 247..572 100 <- Minus
2R 12877332..12878014 822..1504 100 <- Minus
2R 12878073..12878321 573..821 100 <- Minus
2R 12879052..12879146 152..246 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:02:28 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12879223..12879373 1..151 99   Minus
2R 12878385..12878710 247..572 100 <- Minus
2R 12877332..12878014 822..1504 100 <- Minus
2R 12878073..12878321 573..821 100 <- Minus
2R 12879052..12879146 152..246 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:02:28 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12879223..12879373 1..151 99   Minus
2R 12878385..12878710 247..572 100 <- Minus
2R 12877332..12878014 822..1504 100 <- Minus
2R 12878073..12878321 573..821 100 <- Minus
2R 12879052..12879146 152..246 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:09 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8764837..8765519 822..1504 100 <- Minus
arm_2R 8765578..8765826 573..821 100 <- Minus
arm_2R 8765890..8766215 247..572 100 <- Minus
arm_2R 8766557..8766651 152..246 100 <- Minus
arm_2R 8766728..8766878 1..151 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:42 Download gff for GH11283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12878531..12879213 822..1504 100 <- Minus
2R 12879272..12879520 573..821 100 <- Minus
2R 12879584..12879909 247..572 100 <- Minus
2R 12880251..12880345 152..246 100 <- Minus
2R 12880422..12880572 1..151 99   Minus

GH11283.pep Sequence

Translation from 206 to 1180

> GH11283.pep
MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP
PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK
NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW
LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK
YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI
VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA
ALNLYLDIINIFMYILTIIGASRD*

GH11283.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11997-PA 323 GF11997-PA 1..323 1..324 1257 87.8 Plus
Dana\GF11999-PA 247 GF11999-PA 14..247 90..324 888 71.1 Plus
Dana\GF18785-PA 255 GF18785-PA 18..253 87..322 709 56.4 Plus
Dana\GF13645-PA 255 GF13645-PA 26..251 94..319 440 40.3 Plus
Dana\GF15315-PA 226 GF15315-PA 35..225 135..324 346 39.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22542-PA 324 GG22542-PA 1..324 1..324 1640 96.9 Plus
Dere\GG22543-PA 244 GG22543-PA 11..244 90..324 837 71.9 Plus
Dere\GG21447-PA 264 GG21447-PA 29..263 88..322 699 51.1 Plus
Dere\GG23314-PA 274 GG23314-PA 51..270 100..319 400 38.6 Plus
Dere\GG24567-PA 221 GG24567-PA 23..221 124..324 239 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20515-PA 331 GH20515-PA 70..331 62..324 1201 87.5 Plus
Dgri\GH19695-PA 263 GH19695-PA 11..263 75..324 853 65.2 Plus
Dgri\GH20517-PA 246 GH20517-PA 11..245 88..323 851 72.5 Plus
Dgri\GH23740-PA 263 GH23740-PA 20..263 81..324 841 65.6 Plus
Dgri\GH21302-PA 289 GH21302-PA 65..287 98..320 591 49.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-PE 324 CG3798-PE 1..324 1..324 1732 100 Plus
Nmda1-PC 324 CG3798-PC 1..324 1..324 1732 100 Plus
Nmda1-PD 324 CG3798-PD 1..324 1..324 1732 100 Plus
Nmda1-PH 313 CG3798-PH 2..313 13..324 1661 100 Plus
Nmda1-PG 313 CG3798-PG 2..313 13..324 1661 100 Plus
Nmda1-PA 313 CG3798-PA 2..313 13..324 1661 100 Plus
Nmda1-PB 313 CG3798-PB 2..313 13..324 1661 100 Plus
Nmda1-PI 316 CG3798-PI 4..316 12..324 1658 99.4 Plus
Nmda1-PF 316 CG3798-PF 4..316 12..324 1658 99.4 Plus
Lfg-PB 244 CG3814-PB 11..244 90..324 877 71.5 Plus
Lfg-PD 239 CG3814-PD 15..239 100..324 862 72.4 Plus
Lfg-PA 239 CG3814-PA 15..239 100..324 862 72.4 Plus
Lfg-PC 203 CG3814-PC 1..203 122..324 762 70.9 Plus
CG9722-PA 264 CG9722-PA 25..263 87..322 709 55.8 Plus
CG30379-PB 295 CG30379-PB 72..291 100..319 445 37.3 Plus
CG33673-PB 235 CG33673-PB 16..235 104..324 363 36 Plus
CG34430-PA 264 CG34430-PA 34..232 102..308 184 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21061-PA 324 GI21061-PA 80..324 79..324 1119 85.4 Plus
Dmoj\GI24550-PA 263 GI24550-PA 7..263 65..324 962 67.4 Plus
Dmoj\GI21062-PA 244 GI21062-PA 11..244 90..324 879 71.5 Plus
Dmoj\GI19790-PA 285 GI19790-PA 23..279 65..316 593 47.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17450-PA 319 GL17450-PA 1..319 1..324 1251 84.5 Plus
Dper\GL17451-PA 245 GL17451-PA 12..244 90..323 831 71.8 Plus
Dper\GL23305-PA 282 GL23305-PA 13..252 75..316 821 68.2 Plus
Dper\GL11699-PA 304 GL11699-PA 17..300 43..319 529 39 Plus
Dper\GL18462-PA 223 GL18462-PA 23..214 124..315 332 38.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17693-PA 319 GA17693-PA 1..319 1..324 1251 84.5 Plus
Dpse\GA17693-PC 308 GA17693-PC 2..308 13..324 1188 84.2 Plus
Dpse\GA17693-PB 310 GA17693-PB 55..310 69..324 1186 92.2 Plus
Dpse\GA27217-PA 260 GA27217-PA 21..260 87..324 866 71.7 Plus
Dpse\GA17704-PA 245 GA17704-PA 12..245 90..324 834 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20327-PA 324 GM20327-PA 1..324 1..324 1673 99.7 Plus
Dsec\GM20328-PA 244 GM20328-PA 11..244 90..324 834 71.9 Plus
Dsec\GM25879-PA 264 GM25879-PA 10..263 62..322 721 52.1 Plus
Dsec\GM20992-PA 243 GM20992-PA 17..239 52..319 385 34 Plus
Dsec\GM16580-PA 222 GM16580-PA 24..218 120..320 265 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25804-PA 324 GD25804-PA 1..324 1..324 1662 98.8 Plus
Dsim\GD25805-PA 244 GD25805-PA 11..244 90..324 834 71.9 Plus
Dsim\GD20449-PA 262 GD20449-PA 25..261 87..322 723 56.1 Plus
Dsim\GD10521-PA 284 GD10521-PA 13..280 40..319 436 32.9 Plus
Dsim\GD10520-PA 275 GD10520-PA 17..271 52..319 423 34.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21985-PA 333 GJ21985-PA 71..333 53..324 1120 82 Plus
Dvir\GJ22617-PA 262 GJ22617-PA 19..262 81..324 1007 75.4 Plus
Dvir\GJ21986-PA 244 GJ21986-PA 11..244 90..324 889 71.9 Plus
Dvir\GJ15114-PA 302 GJ15114-PA 38..299 57..318 614 48.5 Plus
Dvir\GJ22864-PA 199 GJ22864-PA 3..177 127..302 318 39.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20878-PA 323 GK20878-PA 1..323 1..324 1230 84.3 Plus
Dwil\GK19213-PA 271 GK19213-PA 41..271 93..323 894 68.8 Plus
Dwil\GK20879-PA 244 GK20879-PA 11..244 90..324 873 69.8 Plus
Dwil\GK21973-PA 299 GK21973-PA 72..297 95..320 611 50.4 Plus
Dwil\GK20410-PA 176 GK20410-PA 4..173 128..297 242 30.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13412-PA 324 GE13412-PA 1..324 1..324 1309 95.4 Plus
Dyak\GE13413-PA 244 GE13413-PA 11..244 90..324 838 71.9 Plus
Dyak\GE10054-PA 264 GE10054-PA 29..263 88..322 747 56.6 Plus
Dyak\GE19159-PA 242 GE19159-PA 51..238 100..319 389 39.1 Plus
Dyak\GE15302-PA 223 GE15302-PA 23..222 124..324 257 33.8 Plus

GH11283.hyp Sequence

Translation from 206 to 1180

> GH11283.hyp
MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP
PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK
NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW
LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK
YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI
VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA
ALNLYLDIINIFMYILTIIGASRD*

GH11283.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-PE 324 CG3798-PE 1..324 1..324 1732 100 Plus
Nmda1-PC 324 CG3798-PC 1..324 1..324 1732 100 Plus
Nmda1-PD 324 CG3798-PD 1..324 1..324 1732 100 Plus
Nmda1-PH 313 CG3798-PH 2..313 13..324 1661 100 Plus
Nmda1-PG 313 CG3798-PG 2..313 13..324 1661 100 Plus