BDGP Sequence Production Resources |
Search the DGRC for GH11283
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 112 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | Nmda1-RC |
Protein status: | GH11283.pep: gold |
Sequenced Size: | 1522 |
Gene | Date | Evidence |
---|---|---|
CG3798 | 2002-11-11 | Blastp of sequenced clone |
Nmda1 | 2008-04-29 | Release 5.5 accounting |
Nmda1 | 2008-08-15 | Release 5.9 accounting |
Nmda1 | 2008-12-18 | 5.12 accounting |
1522 bp (1522 high quality bases) assembled on 2002-11-11
GenBank Submission: BT001413
> GH11283.complete GCCACAACAAACGAGACGGTGCCGAAGTTTCTCAGGCATTACTATAGTGG CAAATTGATTGATAATTAAAGTTGCATGCCACCAAAGGTGTGCACATTTC TTAGACACTAATTAAATTAGCTAATGATTGCTTATCATCGTGTCTTTGCA GTTTACTCCACAGCGGTTTCGGAATTACATAGAAATCAGAGCGAAGTCCC TCGAGAATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAATACCAAGATCC CAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATG GTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGC TACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGG ACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAAC CACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAG CCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCGGATTCATACG TAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACTTTTGGAGCTG TTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGCCAGGAATAAC ATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTC TATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACGAACTTCATAT TCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCA ACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGC GGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAGTACGACTTTA CTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTC GGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACACTGGTGTACGC CTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTACGACACACAGT TAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGAGGAGTACATC TTTGCGGCACTAAACCTCTACCTGGACATCATCAATATCTTCATGTACAT TCTGACTATAATCGGCGCATCGCGCGACTAAGTTCCGCTCTATTTCCAAA TATTGTTTGCAGCTTAATCGGGTTATTCAGTAACCTGGAATACACGAATA TTGTTGTCGCGTAATCTCATCGGTGTGCTCCCCCAGTGGAGGTAATCTTC AACTAACGAATTACTCAAATACTTACAAATCTATCTACTTCGTGTTGTGT TTGCCCATTTTCCCCGTTTCCTTCTAGTTCTAAATGTCAACTAAGGCTAT ATGAACTACTTACTTTTTGTTATGTATGTTTTATTGTTGCTTAAGTTGAG GCGCAAACCAAGTGGATATTTCCAAATTTAAAAATAAAAAAATTATATAT ATGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nmda1-RE | 1745 | Nmda1-RE | 1..1505 | 1..1505 | 7510 | 99.9 | Plus |
Nmda1-RC | 1945 | Nmda1-RC | 250..1605 | 150..1505 | 6780 | 100 | Plus |
Nmda1-RF | 2246 | Nmda1-RF | 646..1906 | 245..1505 | 6305 | 100 | Plus |
Nmda1-RF | 2246 | Nmda1-RF | 210..306 | 150..246 | 485 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8764631..8765315 | 1504..820 | 3425 | 100 | Minus |
chr2R | 21145070 | chr2R | 8765683..8766011 | 573..245 | 1630 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 8765370..8765621 | 823..572 | 1260 | 100 | Minus |
chr2R | 21145070 | chr2R | 8766516..8766666 | 151..1 | 740 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 8766352..8766441 | 239..150 | 450 | 100 | Minus |
chr2R | 21145070 | chr2R | 8762588..8762934 | 1165..819 | 400 | 74.4 | Minus |
chr3R | 27901430 | chr3R | 9977842..9977979 | 1151..1014 | 240 | 78.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12877331..12878016 | 1505..820 | 3430 | 100 | Minus |
2R | 25286936 | 2R | 12878384..12878712 | 573..245 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 12878071..12878322 | 823..572 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12879223..12879373 | 151..1 | 740 | 99.3 | Minus |
2R | 25286936 | 2R | 12879052..12879148 | 246..150 | 485 | 100 | Minus |
2R | 25286936 | 2R | 12875289..12875635 | 1165..819 | 415 | 74.6 | Minus |
3R | 32079331 | 3R | 14152992..14153129 | 1151..1014 | 240 | 78.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12878530..12879215 | 1505..820 | 3430 | 100 | Minus |
2R | 25260384 | 2R | 12879583..12879911 | 573..245 | 1645 | 100 | Minus |
2R | 25260384 | 2R | 12879270..12879521 | 823..572 | 1260 | 100 | Minus |
2R | 25260384 | 2R | 12880422..12880572 | 151..1 | 740 | 99.3 | Minus |
2R | 25260384 | 2R | 12880251..12880347 | 246..150 | 485 | 100 | Minus |
2R | 25260384 | 2R | 12876488..12876777 | 1165..876 | 400 | 75.8 | Minus |
3R | 31820162 | 3R | 13893823..13893960 | 1151..1014 | 240 | 78.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8764662..8765313 | 822..1473 | 100 | <- | Minus |
chr2R | 8765372..8765620 | 573..821 | 100 | <- | Minus |
chr2R | 8765684..8766011 | 245..572 | 99 | -> | Minus |
chr2R | 8766346..8766439 | 152..244 | 95 | <- | Minus |
chr2R | 8766516..8766666 | 1..151 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..975 | 207..1181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..975 | 207..1181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RD | 1..975 | 207..1181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..975 | 207..1181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RD | 1..975 | 207..1181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..1504 | 1..1504 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..1504 | 1..1504 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..1504 | 1..1504 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..1504 | 1..1504 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nmda1-RE | 1..1504 | 1..1504 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12879223..12879373 | 1..151 | 99 | Minus | |
2R | 12878385..12878710 | 247..572 | 100 | <- | Minus |
2R | 12877332..12878014 | 822..1504 | 100 | <- | Minus |
2R | 12878073..12878321 | 573..821 | 100 | <- | Minus |
2R | 12879052..12879146 | 152..246 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12879223..12879373 | 1..151 | 99 | Minus | |
2R | 12878385..12878710 | 247..572 | 100 | <- | Minus |
2R | 12877332..12878014 | 822..1504 | 100 | <- | Minus |
2R | 12878073..12878321 | 573..821 | 100 | <- | Minus |
2R | 12879052..12879146 | 152..246 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12879223..12879373 | 1..151 | 99 | Minus | |
2R | 12878385..12878710 | 247..572 | 100 | <- | Minus |
2R | 12877332..12878014 | 822..1504 | 100 | <- | Minus |
2R | 12878073..12878321 | 573..821 | 100 | <- | Minus |
2R | 12879052..12879146 | 152..246 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8764837..8765519 | 822..1504 | 100 | <- | Minus |
arm_2R | 8765578..8765826 | 573..821 | 100 | <- | Minus |
arm_2R | 8765890..8766215 | 247..572 | 100 | <- | Minus |
arm_2R | 8766557..8766651 | 152..246 | 100 | <- | Minus |
arm_2R | 8766728..8766878 | 1..151 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12878531..12879213 | 822..1504 | 100 | <- | Minus |
2R | 12879272..12879520 | 573..821 | 100 | <- | Minus |
2R | 12879584..12879909 | 247..572 | 100 | <- | Minus |
2R | 12880251..12880345 | 152..246 | 100 | <- | Minus |
2R | 12880422..12880572 | 1..151 | 99 | Minus |
Translation from 206 to 1180
> GH11283.pep MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA ALNLYLDIINIFMYILTIIGASRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11997-PA | 323 | GF11997-PA | 1..323 | 1..324 | 1257 | 87.8 | Plus |
Dana\GF11999-PA | 247 | GF11999-PA | 14..247 | 90..324 | 888 | 71.1 | Plus |
Dana\GF18785-PA | 255 | GF18785-PA | 18..253 | 87..322 | 709 | 56.4 | Plus |
Dana\GF13645-PA | 255 | GF13645-PA | 26..251 | 94..319 | 440 | 40.3 | Plus |
Dana\GF15315-PA | 226 | GF15315-PA | 35..225 | 135..324 | 346 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22542-PA | 324 | GG22542-PA | 1..324 | 1..324 | 1640 | 96.9 | Plus |
Dere\GG22543-PA | 244 | GG22543-PA | 11..244 | 90..324 | 837 | 71.9 | Plus |
Dere\GG21447-PA | 264 | GG21447-PA | 29..263 | 88..322 | 699 | 51.1 | Plus |
Dere\GG23314-PA | 274 | GG23314-PA | 51..270 | 100..319 | 400 | 38.6 | Plus |
Dere\GG24567-PA | 221 | GG24567-PA | 23..221 | 124..324 | 239 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20515-PA | 331 | GH20515-PA | 70..331 | 62..324 | 1201 | 87.5 | Plus |
Dgri\GH19695-PA | 263 | GH19695-PA | 11..263 | 75..324 | 853 | 65.2 | Plus |
Dgri\GH20517-PA | 246 | GH20517-PA | 11..245 | 88..323 | 851 | 72.5 | Plus |
Dgri\GH23740-PA | 263 | GH23740-PA | 20..263 | 81..324 | 841 | 65.6 | Plus |
Dgri\GH21302-PA | 289 | GH21302-PA | 65..287 | 98..320 | 591 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nmda1-PE | 324 | CG3798-PE | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PC | 324 | CG3798-PC | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PD | 324 | CG3798-PD | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 2..313 | 13..324 | 1661 | 100 | Plus |
Nmda1-PG | 313 | CG3798-PG | 2..313 | 13..324 | 1661 | 100 | Plus |
Nmda1-PA | 313 | CG3798-PA | 2..313 | 13..324 | 1661 | 100 | Plus |
Nmda1-PB | 313 | CG3798-PB | 2..313 | 13..324 | 1661 | 100 | Plus |
Nmda1-PI | 316 | CG3798-PI | 4..316 | 12..324 | 1658 | 99.4 | Plus |
Nmda1-PF | 316 | CG3798-PF | 4..316 | 12..324 | 1658 | 99.4 | Plus |
Lfg-PB | 244 | CG3814-PB | 11..244 | 90..324 | 877 | 71.5 | Plus |
Lfg-PD | 239 | CG3814-PD | 15..239 | 100..324 | 862 | 72.4 | Plus |
Lfg-PA | 239 | CG3814-PA | 15..239 | 100..324 | 862 | 72.4 | Plus |
Lfg-PC | 203 | CG3814-PC | 1..203 | 122..324 | 762 | 70.9 | Plus |
CG9722-PA | 264 | CG9722-PA | 25..263 | 87..322 | 709 | 55.8 | Plus |
CG30379-PB | 295 | CG30379-PB | 72..291 | 100..319 | 445 | 37.3 | Plus |
CG33673-PB | 235 | CG33673-PB | 16..235 | 104..324 | 363 | 36 | Plus |
CG34430-PA | 264 | CG34430-PA | 34..232 | 102..308 | 184 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21061-PA | 324 | GI21061-PA | 80..324 | 79..324 | 1119 | 85.4 | Plus |
Dmoj\GI24550-PA | 263 | GI24550-PA | 7..263 | 65..324 | 962 | 67.4 | Plus |
Dmoj\GI21062-PA | 244 | GI21062-PA | 11..244 | 90..324 | 879 | 71.5 | Plus |
Dmoj\GI19790-PA | 285 | GI19790-PA | 23..279 | 65..316 | 593 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17450-PA | 319 | GL17450-PA | 1..319 | 1..324 | 1251 | 84.5 | Plus |
Dper\GL17451-PA | 245 | GL17451-PA | 12..244 | 90..323 | 831 | 71.8 | Plus |
Dper\GL23305-PA | 282 | GL23305-PA | 13..252 | 75..316 | 821 | 68.2 | Plus |
Dper\GL11699-PA | 304 | GL11699-PA | 17..300 | 43..319 | 529 | 39 | Plus |
Dper\GL18462-PA | 223 | GL18462-PA | 23..214 | 124..315 | 332 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17693-PA | 319 | GA17693-PA | 1..319 | 1..324 | 1251 | 84.5 | Plus |
Dpse\GA17693-PC | 308 | GA17693-PC | 2..308 | 13..324 | 1188 | 84.2 | Plus |
Dpse\GA17693-PB | 310 | GA17693-PB | 55..310 | 69..324 | 1186 | 92.2 | Plus |
Dpse\GA27217-PA | 260 | GA27217-PA | 21..260 | 87..324 | 866 | 71.7 | Plus |
Dpse\GA17704-PA | 245 | GA17704-PA | 12..245 | 90..324 | 834 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20327-PA | 324 | GM20327-PA | 1..324 | 1..324 | 1673 | 99.7 | Plus |
Dsec\GM20328-PA | 244 | GM20328-PA | 11..244 | 90..324 | 834 | 71.9 | Plus |
Dsec\GM25879-PA | 264 | GM25879-PA | 10..263 | 62..322 | 721 | 52.1 | Plus |
Dsec\GM20992-PA | 243 | GM20992-PA | 17..239 | 52..319 | 385 | 34 | Plus |
Dsec\GM16580-PA | 222 | GM16580-PA | 24..218 | 120..320 | 265 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25804-PA | 324 | GD25804-PA | 1..324 | 1..324 | 1662 | 98.8 | Plus |
Dsim\GD25805-PA | 244 | GD25805-PA | 11..244 | 90..324 | 834 | 71.9 | Plus |
Dsim\GD20449-PA | 262 | GD20449-PA | 25..261 | 87..322 | 723 | 56.1 | Plus |
Dsim\GD10521-PA | 284 | GD10521-PA | 13..280 | 40..319 | 436 | 32.9 | Plus |
Dsim\GD10520-PA | 275 | GD10520-PA | 17..271 | 52..319 | 423 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21985-PA | 333 | GJ21985-PA | 71..333 | 53..324 | 1120 | 82 | Plus |
Dvir\GJ22617-PA | 262 | GJ22617-PA | 19..262 | 81..324 | 1007 | 75.4 | Plus |
Dvir\GJ21986-PA | 244 | GJ21986-PA | 11..244 | 90..324 | 889 | 71.9 | Plus |
Dvir\GJ15114-PA | 302 | GJ15114-PA | 38..299 | 57..318 | 614 | 48.5 | Plus |
Dvir\GJ22864-PA | 199 | GJ22864-PA | 3..177 | 127..302 | 318 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20878-PA | 323 | GK20878-PA | 1..323 | 1..324 | 1230 | 84.3 | Plus |
Dwil\GK19213-PA | 271 | GK19213-PA | 41..271 | 93..323 | 894 | 68.8 | Plus |
Dwil\GK20879-PA | 244 | GK20879-PA | 11..244 | 90..324 | 873 | 69.8 | Plus |
Dwil\GK21973-PA | 299 | GK21973-PA | 72..297 | 95..320 | 611 | 50.4 | Plus |
Dwil\GK20410-PA | 176 | GK20410-PA | 4..173 | 128..297 | 242 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13412-PA | 324 | GE13412-PA | 1..324 | 1..324 | 1309 | 95.4 | Plus |
Dyak\GE13413-PA | 244 | GE13413-PA | 11..244 | 90..324 | 838 | 71.9 | Plus |
Dyak\GE10054-PA | 264 | GE10054-PA | 29..263 | 88..322 | 747 | 56.6 | Plus |
Dyak\GE19159-PA | 242 | GE19159-PA | 51..238 | 100..319 | 389 | 39.1 | Plus |
Dyak\GE15302-PA | 223 | GE15302-PA | 23..222 | 124..324 | 257 | 33.8 | Plus |
Translation from 206 to 1180
> GH11283.hyp MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA ALNLYLDIINIFMYILTIIGASRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nmda1-PE | 324 | CG3798-PE | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PC | 324 | CG3798-PC | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PD | 324 | CG3798-PD | 1..324 | 1..324 | 1732 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 2..313 | 13..324 | 1661 | 100 | Plus |
Nmda1-PG | 313 | CG3798-PG | 2..313 | 13..324 | 1661 | 100 | Plus |