Clone GH11331 Report

Search the DGRC for GH11331

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:113
Well:31
Vector:pOT2
Associated Gene/Transcriptporin-RA
Protein status:GH11331.pep: gold
Preliminary Size:3034
Sequenced Size:3248

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6647 2001-01-01 Release 2 assignment
CG6647 2001-12-12 Blastp of sequenced clone
CG6647 2003-01-01 Sim4 clustering to Release 3
porin 2008-04-29 Release 5.5 accounting
porin 2008-08-15 Release 5.9 accounting
porin 2008-12-18 5.12 accounting

Clone Sequence Records

GH11331.complete Sequence

3248 bp (3248 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070509

> GH11331.complete
CTCTGTTCCTCTGCGTTTCGCATTACACTCTAACCAAACTAAAACTCATC
AAAAGTAAGTAGCTCAGGAGTAAACCCCCTCAAAATTCAGTGAAATGTGA
TGGATACCCCTATGGGTAGAAGGAAAATCAGGATTTTCGGTGCCAGTGAT
TTCATAACCTCGAAATGAAAAAATTGCAAGTAGACACGCGCATGAACGAA
AAGCAAAAGGGCTGAGCACTTTTTTGTTGGATGACGATGGGCGAGCTTCT
TATCACCAAATCACGCAATAATTAATTGATAAATCCGAAATTTAAAGGGG
ATATTAAGCCGGTTAGCTGTCACACACACATCCACACATGAACAGTCCAC
GCACACCAATGCCTTCGCAGTTCATTGGCAGCAGCTGCCGGCGAAAAAAG
GGGGCAAAGAAGCAGAGAGATCGATGGAAAAGTGCCTGGCGAATTTCCGT
TACGTAACGCATGTCGCATCAATTCCGTTCGTTATCGTCATGTTGCCATC
CACCAGCGTGCAGCTCGCTCAATAAACATTTTCGATTTCACTCTTTACCG
TTCTTTATCGTCGTTTTGTTTGTTTGTGGTCATGTGAGGAGGTGGGTGCA
CTTCGCGATTGTGGGTGGTATTTTCGCAGTGACGTCACCTGGAAAATCAA
TAGACCACCTTTTCGGGCAGCTATTCACTTAGCTTTCCACTTTCCCTCAT
CGATTTCCCTGCTGTTATGCAACTGTCGAAAAAATGAGCTGCACATCCAC
CCAACCACCCCCTTTATAATCTGCTTGTCAAGGTCATCGTCAACGAGATG
CTGATTCATTTTCACCGGGACATCCACCTGATAGTATTATTTTCAGCATC
TAGTGACCAGGTTATATCACCTGACTTCCGGAACAATAAGAGCCCATCCC
ATTTAACGTTTGGCTGCCGGCCATAAAGATTTTTGTCTGCTGGCCGCTGC
TTTTCATAATTTTCTGCCTTGATTGCCTTGAGTTTCCCCCCACCAATCCC
CCCGAACACAACATGAAATATTTATATTGTTATATCTATATAATAATTTC
AATTAGATGTTTTGGGTTATTTTTGTTTGATTTTTTTTTATGCTCAATAT
CGGATAGAAATTTATTTATCCGCGACTAATATTCCTACCGCGACTGTGAG
TCGCATTCCTGACGTCACGCAAATAGAAACAGCGAAGCAGTGACCACAGC
AGACGTTGCAAATGTGCAGTTAGCTTCTGAGTCAATGATCGCTAGCCTAA
CGGGACTGAACTGACCAGCAATTAATGCCAGCAAGAACGGAACGTAAACA
TAGAGAGAGGCAAACCTGTGGCCAGATAAATAGGGAAAATCTCAGTATTT
TTATTAAAATTTTAGTTTAAAAAACCTATAAAAATATTTGAAAAATAAAT
TTTGATTTAAATGGTTTTGCATTGGTATAGAAAACCCTTAATTTCTTGGA
GTAAAATAGACTTAGTCACTATTTGTTTTCTATCTTCGCTTCTATTTTTT
GCGCCACTTTATTTTGCCCAGACGTGCATTGACCCCCTCCTCAGTCACTC
AGAATTTTCGCTGCTTCAGTTGGTGATTCTTTGCATGTGGCCGCCTTGAA
CACTAATCTAAATTGATTTCTTTATTTTCGCCGCACAAAATTGACATTTA
GCCAAAGTGAAAATGGGGAAAAAGCCCTCGAAATTCTTGGGACATGTTGA
TGCTGTTTTTTGGCGTCTTTTAGTTTTCACTTTTCATTTGCGGCCGATAG
AACATTTTGAAATCAAGTCGAGCAAAAAGTAATAATCATTATGTTGCTGA
TAAGATTAAACTTATCGTTCGCTAAACGCAATTAATGACCTGGCGAGTGA
AATGATTTCGCAATAAGTATCATCGTCATGATTATCGATTATTCACCAAC
TAATTGAAGGTGCGATTTAATGCATTCCATTTCAATCCATTCCAGATGGC
TCCTCCATCATACAGCGATTTGGGCAAACAGGCTCGCGACATCTTCAGCA
AAGGCTACAACTTTGGCCTGTGGAAGCTCGATCTGAAGACTAAGACCTCG
TCGGGCATTGAGTTCAACACAGCCGGACACTCCAACCAGGAGTCTGGAAA
GGTCTTCGGCTCCCTGGAGACCAAGTACAAGGTCAAGGACTACGGCCTGA
CCCTCACCGAGAAGTGGAACACAGACAACACGCTGTTCACCGAGGTTGCT
GTCCAGGATCAGCTCCTCGAGGGTCTGAAGCTGTCCCTGGAGGGCAACTT
TGCTCCTCAGTCTGGAAACAAGAACGGCAAGTTCAAGGTTGCCTACGGCC
ATGAGAACGTCAAGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCC
TTGATCAATGCCTCTGCCGTGCTTGGCTACCAGGGATGGTTGGCCGGCTA
CCAGACCGCATTTGACACACAACAGTCCAAGCTGACCACCAACAACTTTG
CCCTTGGCTACACCACCAAGGACTTTGTTCTGCACACAGCTGTCAACGAT
GGCCAGGAGTTCAGCGGCTCGATCTTCCAACGCACTTCGGACAAGCTGGA
TGTGGGTGTACAGCTGTCGTGGGCCAGCGGCACCAGCAACACCAAGTTCG
CCATCGGCGCCAAGTATCAGCTGGATGATGATGCCAGCGTGCGCGCTAAG
GTGAACAACGCCAGCCAGGTGGGTCTGGGCTACCAGCAGAAGTTGCGCGA
CGGAGTCACCCTGACCCTGTCCACGCTGGTCGATGGCAAGAACTTCAATG
CCGGCGGCCACAAGATCGGTGTGGGTCTGGAGCTGGAGGCCTAAGTCCGT
GGTTTTCCGCTAGTCGTGAAATCCTTGAACGTTGTCTAACATCCCCACAC
GCCCAACAACAACAACAACAACAATAACAGCAGCCAGACAAGTGCAGAAA
CAACAACAAGATCAAACAAAATAAAAGATACGATATTCTTTAAAAACAAA
CAACACACAGTCAAATATAAAGAGAATCTGCACATCTTAGCGATTCGATT
GGATTGGATTAGTTGTCAGCCGGCCATCACCACATCCGCCCATTCCCTGC
CCCAGCCACGCGAATCTGCAGGAGAGACACTGCCAAACAAACGATGCAGG
GGGATGGATGGGTGGTGCAATCGATGGGTCGGTCAGGTCAGTCCGTCGTC
GTTGGATGTAGCTTTGATTAGTGCATTGAATATTAGCGAAATTGTTGTTG
ACAAAAGTGCAGTAAAAATACATTTACCTATTAAACGAAAAAAAAAAA

GH11331.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RC 3310 porin-RC 63..3309 1..3248 16200 99.9 Plus
porin.c 3631 porin.c 63..3309 1..3248 16200 99.9 Plus
porin.b 1849 porin.b 225..1527 1946..3248 6515 100 Plus
porin.b 1849 porin.b 1..224 230..453 1120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10847314..10849577 2265..1 11275 100 Minus
chr2L 23010047 chr2L 10846195..10846938 3237..2494 3720 100 Minus
chr2L 23010047 chr2L 10847011..10847239 2493..2265 1145 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10850807 2265..1 11275 100 Minus
2L 23513712 2L 10847414..10848168 3248..2494 3775 100 Minus
2L 23513712 2L 10848241..10848469 2493..2265 1145 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10850807 2265..1 11285 99.9 Minus
2L 23513712 2L 10847414..10848168 3248..2494 3775 100 Minus
2L 23513712 2L 10848241..10848469 2493..2265 1145 100 Minus
2L 23513712 2L 10846659..10846731 2179..2107 155 80.8 Minus
Blast to na_te.dros performed on 2019-03-16 16:15:29 has no hits.

GH11331.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:16:12 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10846195..10846938 2494..3237 96 <- Minus
chr2L 10847011..10847238 2266..2493 100 <- Minus
chr2L 10847314..10848166 1413..2265 100 == Minus
chr2L 10848234..10849577 1..1345 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:18 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 1946..2794 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:35 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 1946..2794 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:41 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 1946..2794 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:39 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 1946..2794 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:24:24 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 1946..2794 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:17 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 62..3297 1..3237 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:35 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 62..3297 1..3237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 17:06:41 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:39 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 62..3297 1..3237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 12:24:24 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:16:12 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10847425..10848168 2494..3237 100 <- Minus
2L 10848241..10848468 2266..2493 100 <- Minus
2L 10848544..10850807 1..2265 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:16:12 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10847425..10848168 2494..3237 100 <- Minus
2L 10848241..10848468 2266..2493 100 <- Minus
2L 10848544..10850807 1..2265 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:16:12 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10847425..10848168 2494..3237 100 <- Minus
2L 10848241..10848468 2266..2493 100 <- Minus
2L 10848544..10850807 1..2265 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:41 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10847425..10848168 2494..3237 100 <- Minus
arm_2L 10848241..10848468 2266..2493 100 <- Minus
arm_2L 10848544..10850807 1..2265 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:53 Download gff for GH11331.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10847425..10848168 2494..3237 100 <- Minus
2L 10848241..10848468 2266..2493 100 <- Minus
2L 10848544..10850807 1..2265 99   Minus

GH11331.pep Sequence

Translation from 1945 to 2793

> GH11331.pep
MAPPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQES
GKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEG
NFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLA
GYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDK
LDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKL
RDGVTLTLSTLVDGKNFNAGGHKIGVGLELEA*

GH11331.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14059-PA 315 GF14059-PA 34..315 1..282 1462 99.6 Plus
Dana\GF14060-PA 301 GF14060-PA 9..301 2..282 603 40.8 Plus
Dana\GF14061-PA 333 GF14061-PA 51..324 5..275 223 23.9 Plus
Dana\GF14062-PA 346 GF14062-PA 66..341 5..277 219 25.3 Plus
Dana\GF14063-PA 284 GF14063-PA 47..280 4..238 196 21.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10349-PA 282 GG10349-PA 1..282 1..282 1456 99.6 Plus
Dere\GG10350-PA 295 GG10350-PA 6..295 4..282 636 42.6 Plus
Dere\GG10352-PA 358 GG10352-PA 80..352 4..276 261 27.1 Plus
Dere\GG10351-PA 338 GG10351-PA 60..331 4..275 202 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13331-PA 282 GH13331-PA 1..282 1..282 1423 95.7 Plus
Dgri\GH13332-PA 296 GH13332-PA 1..296 1..282 549 40.3 Plus
Dgri\GH14201-PA 283 GH14201-PA 3..283 2..282 500 36.9 Plus
Dgri\GH13334-PA 335 GH13334-PA 60..329 4..276 191 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
porin-PE 282 CG6647-PE 1..282 1..282 1459 100 Plus
porin-PD 282 CG6647-PD 1..282 1..282 1459 100 Plus
porin-PC 282 CG6647-PC 1..282 1..282 1459 100 Plus
porin-PB 282 CG6647-PB 1..282 1..282 1459 100 Plus
porin-PA 282 CG6647-PA 1..282 1..282 1459 100 Plus
Porin2-PB 293 CG17137-PB 6..292 4..281 643 42.4 Plus
Porin2-PA 293 CG17137-PA 6..292 4..281 643 42.4 Plus
CG17140-PB 361 CG17140-PB 83..355 4..276 283 26.2 Plus
CG17140-PA 361 CG17140-PA 83..355 4..276 283 26.2 Plus
CG17139-PA 340 CG17139-PA 62..333 4..275 232 23.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17807-PA 282 GI17807-PA 1..282 1..282 1453 98.6 Plus
Dmoj\GI17808-PA 288 GI17808-PA 1..288 1..282 615 45.9 Plus
Dmoj\GI16915-PA 330 GI16915-PA 55..328 4..280 258 24.1 Plus
Dmoj\GI17809-PA 310 GI17809-PA 34..310 4..282 193 21.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26379-PA 282 GL26379-PA 1..282 1..282 1402 95.7 Plus
Dper\GL26380-PA 297 GL26380-PA 1..297 1..282 647 41.9 Plus
Dper\GL23369-PA 135 GL23369-PA 41..134 120..224 325 62.9 Plus
Dper\GL26381-PA 348 GL26381-PA 66..341 4..275 295 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19750-PA 282 GA19750-PA 1..282 1..282 1402 95.7 Plus
Dpse\GA14341-PA 297 GA14341-PA 1..297 1..282 651 42.3 Plus
Dpse\GA27235-PA 117 GA27235-PA 25..116 120..224 298 61.9 Plus
Dpse\GA16423-PA 348 GA16423-PA 66..341 4..275 295 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11358-PA 282 GM11358-PA 1..282 1..282 1463 100 Plus
Dsec\GM11369-PA 293 GM11369-PA 6..293 4..282 629 41.9 Plus
Dsec\GM11391-PA 361 GM11391-PA 83..355 4..276 262 26.2 Plus
Dsec\GM11380-PA 340 GM11380-PA 63..333 5..275 225 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22218-PA 282 GD22218-PA 1..282 1..282 1463 100 Plus
Dsim\GD22219-PA 293 GD22219-PA 6..293 4..282 629 41.9 Plus
Dsim\GD22221-PA 361 GD22221-PA 83..355 4..276 263 26.2 Plus
Dsim\GD22220-PA 340 GD22220-PA 63..333 5..275 233 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17632-PA 304 GJ17632-PA 23..304 1..282 1459 99.3 Plus
Dvir\GJ17633-PA 292 GJ17633-PA 3..292 2..282 645 44.2 Plus
Dvir\GJ17635-PA 309 GJ17635-PA 33..309 4..282 236 22.1 Plus
Dvir\GJ17637-PA 325 GJ17637-PA 49..325 4..282 214 23.3 Plus
Dvir\GJ17634-PA 320 GJ17634-PA 44..320 4..282 204 21.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23973-PA 282 GK23973-PA 1..282 1..282 1408 95.7 Plus
Dwil\GK23976-PA 292 GK23976-PA 1..292 1..282 667 44 Plus
Dwil\GK23977-PA 331 GK23977-PA 43..325 1..276 295 27.3 Plus
Dwil\GK23975-PA 502 GK23975-PA 214..496 1..276 271 26.2 Plus
Dwil\GK23974-PA 323 GK23974-PA 35..323 1..282 268 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\porin-PA 282 GE13240-PA 1..282 1..282 1463 100 Plus
Dyak\GE13251-PA 296 GE13251-PA 6..296 4..282 621 41.8 Plus
Dyak\GE13273-PA 359 GE13273-PA 81..353 4..276 257 26.8 Plus
Dyak\GE13262-PA 342 GE13262-PA 62..336 4..276 224 22.7 Plus

GH11331.hyp Sequence

Translation from 1945 to 2793

> GH11331.hyp
MAPPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQES
GKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEG
NFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLA
GYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDK
LDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKL
RDGVTLTLSTLVDGKNFNAGGHKIGVGLELEA*

GH11331.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
porin-PE 282 CG6647-PE 1..282 1..282 1459 100 Plus
porin-PD 282 CG6647-PD 1..282 1..282 1459 100 Plus
porin-PC 282 CG6647-PC 1..282 1..282 1459 100 Plus
porin-PB 282 CG6647-PB 1..282 1..282 1459 100 Plus
porin-PA 282 CG6647-PA 1..282 1..282 1459 100 Plus