BDGP Sequence Production Resources |
Search the DGRC for GH11341
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 113 |
Well: | 41 |
Vector: | pOT2 |
Associated Gene/Transcript | Rpn5-RA |
Protein status: | GH11341.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1867 |
Gene | Date | Evidence |
---|---|---|
CG1100 | 2001-01-01 | Release 2 assignment |
CG1100 | 2001-09-19 | Blastp of sequenced clone |
CG1100 | 2003-01-01 | Sim4 clustering to Release 3 |
Rpn5 | 2008-04-29 | Release 5.5 accounting |
Rpn5 | 2008-08-15 | Release 5.9 accounting |
Rpn5 | 2008-12-18 | 5.12 accounting |
1867 bp (1867 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058339
> GH11341.complete AAAATTTGTGCGGAGATTATTATTAGAAAAAAGCCGCTTTTGCATCCAAT AACTTTAAGAAAAGGAGCAGACAAACCAACCAGGTTTGAAGCAAGACGAC ATTTATCATTTCCTATCGTGAAAAACAGTTTTAGTAGATTCTGCAGCAGG GTAAAGGCGAAATATAGAACACAATGGACACCTATTTGTTTGATGGCGGC CGCATCACCAAGATGGAGGTGGACTACGAGCCGGCGTGCAACGAGAAAAT CCCCCTGGCTAAGGAGCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAG CCATCGAGATGATGCTACAACTGGAGAAGCAGACGCGCCTGGGCGCCGAC ATGGTTTCTTGCTCACGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGA CGCGTCCAACTGGAACGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCC GTCGCTCCCAGCTGAAGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTC ACGTACGTGGACAAGACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGA CACACTTCGCTCGGTTACCGAGGGCAAGATTTACGTTGAGATCGAGCGGG CCCGTCTTACTAAGATTCTGGCGGACATTAAGGAAGCCGATGGCGATGTC GCCGGAGCTGCCACTGTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTC GATGGATAAGCGCGAGAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTT GTCTGTTGAAGGAGGATTACGTATCCACGCAGATCATTGCCAAGAAGATC AGTATAAAGTTCTTTGACGATCCGGCACAGCATGATCTGAAGCTGAAGTT CTACTATCTAATGATTCAGTTGAACAGAGACACCTCCTTCCTGAATACTT CGCGCCATTATCAGGCCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTT ACACCCGTAGACTCTGCCGCGTCCACGGATGAGCAAAAAAAGAAGGATGA CGATAAGAAAAAGAAGGAGGAAGATGACAAGGATAAGAAGCCAGAGGTTG CTACAGAGGCTGAGGTCGAAATTGAACTTACCGAGGAGCAGAAGAAGGAA CTGACGGAAAAGCTGGTTTGTGCCGTGCTTTATTGCGTTTTAGCTCCCTT CGACAACGAACAGAGCGACATGATGGCACATCTTTCGAAGAACAAGAAGC TGGAGGAAGTGCCCGCCTATAAGGAAATTCTGCGCTTGTTCATGTCAAAG GAGCTGATCAACTTCGACACATTTAATGCAGACTTTGGGCTCGTGTTGGC TGAAAACGAGATGTTCAAGGATAGCACCAAGCATGGCAAGAAATGTATCA CCGAGCTTAAGGATCGTCTGATAGAGCATAACATTCGCATCATTGCCATG TATTACTCCCGCCTGCATTTGGCGCGCATGAGTGAGCTGCTGAACCTGCC CACCAGCCGCTGCGAGGAGTATCTTTCTAAACTGGCCAACACCGACACCA TCCGCGTAAAGATCGACCGTCCCGCCGGCATCATTTACTTCACCCAAAAA AAGAGCGCCTCCGACATCCTGAACAACTGGGCCACCGACGTCAACCAGCT GATGTCCCTGGTCAACAAGACCTGCCACTTGATTAACAAGGAAGAGTGCG TCTACTCCGTCATGTGTGCTGTCGAGGATTAATCCTGTTCCATAGGTGCT TAGAATAGTGTTTCCCCCTTGAAGCGCCTATCCACACGCAACTGTAATTG TACTAACCCCTAACCATCAACATTTCGATTCTCTTCGTGAAGTTTGTATT CATTGAATGAACTACAATTATTAAATGAATCCCCCCATTAAATCTCAAAA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1615414..1616472 | 165..1223 | 5295 | 100 | Plus |
chr3R | 27901430 | chr3R | 1616750..1617216 | 1380..1846 | 2335 | 100 | Plus |
chr3R | 27901430 | chr3R | 1615191..1615357 | 1..167 | 835 | 100 | Plus |
chr3R | 27901430 | chr3R | 1616531..1616687 | 1223..1379 | 785 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5789767..5790825 | 165..1223 | 5295 | 100 | Plus |
3R | 32079331 | 3R | 5791103..5791569 | 1380..1846 | 2335 | 100 | Plus |
3R | 32079331 | 3R | 5789544..5789710 | 1..167 | 835 | 100 | Plus |
3R | 32079331 | 3R | 5790884..5791040 | 1223..1379 | 785 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5530598..5531656 | 165..1223 | 5295 | 100 | Plus |
3R | 31820162 | 3R | 5531934..5532400 | 1380..1846 | 2335 | 100 | Plus |
3R | 31820162 | 3R | 5530375..5530541 | 1..167 | 835 | 100 | Plus |
3R | 31820162 | 3R | 5531715..5531871 | 1223..1379 | 785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1615191..1615357 | 1..167 | 100 | -> | Plus |
chr3R | 1615417..1616225 | 168..976 | 100 | == | Plus |
chr3R | 1616290..1616471 | 1041..1222 | 100 | -> | Plus |
chr3R | 1616531..1616687 | 1223..1379 | 100 | -> | Plus |
chr3R | 1616750..1617216 | 1380..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 1..1509 | 174..1682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 1..1509 | 174..1682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 1..1509 | 174..1682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 1..1509 | 174..1682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 1..1509 | 174..1682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 56..1901 | 1..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 56..1901 | 1..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 52..1897 | 1..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 56..1901 | 1..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn5-RA | 52..1897 | 1..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5789544..5789710 | 1..167 | 100 | -> | Plus |
3R | 5789770..5790824 | 168..1222 | 100 | -> | Plus |
3R | 5790884..5791040 | 1223..1379 | 100 | -> | Plus |
3R | 5791103..5791569 | 1380..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5789544..5789710 | 1..167 | 100 | -> | Plus |
3R | 5789770..5790824 | 168..1222 | 100 | -> | Plus |
3R | 5790884..5791040 | 1223..1379 | 100 | -> | Plus |
3R | 5791103..5791569 | 1380..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5789544..5789710 | 1..167 | 100 | -> | Plus |
3R | 5789770..5790824 | 168..1222 | 100 | -> | Plus |
3R | 5790884..5791040 | 1223..1379 | 100 | -> | Plus |
3R | 5791103..5791569 | 1380..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1615266..1615432 | 1..167 | 100 | -> | Plus |
arm_3R | 1615492..1616546 | 168..1222 | 100 | -> | Plus |
arm_3R | 1616606..1616762 | 1223..1379 | 100 | -> | Plus |
arm_3R | 1616825..1617291 | 1380..1846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5530375..5530541 | 1..167 | 100 | -> | Plus |
3R | 5531934..5532400 | 1380..1846 | 100 | Plus | |
3R | 5530601..5531655 | 168..1222 | 100 | -> | Plus |
3R | 5531715..5531871 | 1223..1379 | 100 | -> | Plus |
Translation from 173 to 1681
> GH11341.pep MDTYLFDGGRITKMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQL EKQTRLGADMVSCSRVLVAICQICFDASNWNALNEYVSLLVRRRSQLKQA VVKMIQECVTYVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILA DIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYV STQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLNRDTSFLNTSRHYQAIA EPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEI ELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYK EILRLFMSKELINFDTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLI EHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRP AGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVMCAV ED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16352-PA | 503 | GF16352-PA | 1..503 | 1..502 | 2414 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13041-PA | 502 | GG13041-PA | 1..502 | 1..502 | 2627 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18156-PA | 496 | GH18156-PA | 1..496 | 1..502 | 2337 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn5-PA | 502 | CG1100-PA | 1..502 | 1..502 | 2562 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10109-PA | 497 | GI10109-PA | 1..497 | 1..502 | 2277 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24524-PA | 500 | GL24524-PA | 1..500 | 1..502 | 2384 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10700-PA | 500 | GA10700-PA | 1..500 | 1..502 | 2384 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10840-PA | 502 | GM10840-PA | 1..502 | 1..502 | 2654 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19821-PA | 483 | GD19821-PA | 1..483 | 1..502 | 2513 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23330-PA | 497 | GJ23330-PA | 1..497 | 1..502 | 2320 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13432-PA | 491 | GK13432-PA | 1..491 | 1..502 | 2343 | 90 | Plus |
Dwil\GK15274-PA | 80 | GK15274-PA | 36..80 | 131..175 | 212 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10165-PA | 502 | GE10165-PA | 1..502 | 1..502 | 2621 | 98 | Plus |
Translation from 173 to 1681
> GH11341.hyp MDTYLFDGGRITKMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQL EKQTRLGADMVSCSRVLVAICQICFDASNWNALNEYVSLLVRRRSQLKQA VVKMIQECVTYVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILA DIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYV STQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLNRDTSFLNTSRHYQAIA EPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEI ELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYK EILRLFMSKELINFDTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLI EHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRP AGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVMCAV ED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn5-PA | 502 | CG1100-PA | 1..502 | 1..502 | 2562 | 100 | Plus |