Clone GH11341 Report

Search the DGRC for GH11341

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:113
Well:41
Vector:pOT2
Associated Gene/TranscriptRpn5-RA
Protein status:GH11341.pep: gold
Preliminary Size:2200
Sequenced Size:1867

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1100 2001-01-01 Release 2 assignment
CG1100 2001-09-19 Blastp of sequenced clone
CG1100 2003-01-01 Sim4 clustering to Release 3
Rpn5 2008-04-29 Release 5.5 accounting
Rpn5 2008-08-15 Release 5.9 accounting
Rpn5 2008-12-18 5.12 accounting

Clone Sequence Records

GH11341.complete Sequence

1867 bp (1867 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058339

> GH11341.complete
AAAATTTGTGCGGAGATTATTATTAGAAAAAAGCCGCTTTTGCATCCAAT
AACTTTAAGAAAAGGAGCAGACAAACCAACCAGGTTTGAAGCAAGACGAC
ATTTATCATTTCCTATCGTGAAAAACAGTTTTAGTAGATTCTGCAGCAGG
GTAAAGGCGAAATATAGAACACAATGGACACCTATTTGTTTGATGGCGGC
CGCATCACCAAGATGGAGGTGGACTACGAGCCGGCGTGCAACGAGAAAAT
CCCCCTGGCTAAGGAGCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAG
CCATCGAGATGATGCTACAACTGGAGAAGCAGACGCGCCTGGGCGCCGAC
ATGGTTTCTTGCTCACGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGA
CGCGTCCAACTGGAACGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCC
GTCGCTCCCAGCTGAAGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTC
ACGTACGTGGACAAGACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGA
CACACTTCGCTCGGTTACCGAGGGCAAGATTTACGTTGAGATCGAGCGGG
CCCGTCTTACTAAGATTCTGGCGGACATTAAGGAAGCCGATGGCGATGTC
GCCGGAGCTGCCACTGTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTC
GATGGATAAGCGCGAGAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTT
GTCTGTTGAAGGAGGATTACGTATCCACGCAGATCATTGCCAAGAAGATC
AGTATAAAGTTCTTTGACGATCCGGCACAGCATGATCTGAAGCTGAAGTT
CTACTATCTAATGATTCAGTTGAACAGAGACACCTCCTTCCTGAATACTT
CGCGCCATTATCAGGCCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTT
ACACCCGTAGACTCTGCCGCGTCCACGGATGAGCAAAAAAAGAAGGATGA
CGATAAGAAAAAGAAGGAGGAAGATGACAAGGATAAGAAGCCAGAGGTTG
CTACAGAGGCTGAGGTCGAAATTGAACTTACCGAGGAGCAGAAGAAGGAA
CTGACGGAAAAGCTGGTTTGTGCCGTGCTTTATTGCGTTTTAGCTCCCTT
CGACAACGAACAGAGCGACATGATGGCACATCTTTCGAAGAACAAGAAGC
TGGAGGAAGTGCCCGCCTATAAGGAAATTCTGCGCTTGTTCATGTCAAAG
GAGCTGATCAACTTCGACACATTTAATGCAGACTTTGGGCTCGTGTTGGC
TGAAAACGAGATGTTCAAGGATAGCACCAAGCATGGCAAGAAATGTATCA
CCGAGCTTAAGGATCGTCTGATAGAGCATAACATTCGCATCATTGCCATG
TATTACTCCCGCCTGCATTTGGCGCGCATGAGTGAGCTGCTGAACCTGCC
CACCAGCCGCTGCGAGGAGTATCTTTCTAAACTGGCCAACACCGACACCA
TCCGCGTAAAGATCGACCGTCCCGCCGGCATCATTTACTTCACCCAAAAA
AAGAGCGCCTCCGACATCCTGAACAACTGGGCCACCGACGTCAACCAGCT
GATGTCCCTGGTCAACAAGACCTGCCACTTGATTAACAAGGAAGAGTGCG
TCTACTCCGTCATGTGTGCTGTCGAGGATTAATCCTGTTCCATAGGTGCT
TAGAATAGTGTTTCCCCCTTGAAGCGCCTATCCACACGCAACTGTAATTG
TACTAACCCCTAACCATCAACATTTCGATTCTCTTCGTGAAGTTTGTATT
CATTGAATGAACTACAATTATTAAATGAATCCCCCCATTAAATCTCAAAA
AAAAAAAAAAAAAAAAA

GH11341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn5-RA 2183 Rpn5-RA 142..1987 1..1846 9230 100 Plus
Rpn5.e 2155 Rpn5.e 140..1985 1..1846 9230 100 Plus
Rpn5.b 1911 Rpn5.b 56..1905 1..1846 9165 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1615414..1616472 165..1223 5295 100 Plus
chr3R 27901430 chr3R 1616750..1617216 1380..1846 2335 100 Plus
chr3R 27901430 chr3R 1615191..1615357 1..167 835 100 Plus
chr3R 27901430 chr3R 1616531..1616687 1223..1379 785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5789767..5790825 165..1223 5295 100 Plus
3R 32079331 3R 5791103..5791569 1380..1846 2335 100 Plus
3R 32079331 3R 5789544..5789710 1..167 835 100 Plus
3R 32079331 3R 5790884..5791040 1223..1379 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5530598..5531656 165..1223 5295 100 Plus
3R 31820162 3R 5531934..5532400 1380..1846 2335 100 Plus
3R 31820162 3R 5530375..5530541 1..167 835 100 Plus
3R 31820162 3R 5531715..5531871 1223..1379 785 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:02:05 has no hits.

GH11341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:02:53 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1615191..1615357 1..167 100 -> Plus
chr3R 1615417..1616225 168..976 100 == Plus
chr3R 1616290..1616471 1041..1222 100 -> Plus
chr3R 1616531..1616687 1223..1379 100 -> Plus
chr3R 1616750..1617216 1380..1846 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:22 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 1..1509 174..1682 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:23 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 1..1509 174..1682 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:07:37 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 1..1509 174..1682 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:09 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 1..1509 174..1682 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:37 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 1..1509 174..1682 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:49 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 56..1901 1..1846 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:23 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 56..1901 1..1846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:07:37 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 52..1897 1..1846 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:09 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 56..1901 1..1846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:37 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn5-RA 52..1897 1..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:53 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5789544..5789710 1..167 100 -> Plus
3R 5789770..5790824 168..1222 100 -> Plus
3R 5790884..5791040 1223..1379 100 -> Plus
3R 5791103..5791569 1380..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:53 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5789544..5789710 1..167 100 -> Plus
3R 5789770..5790824 168..1222 100 -> Plus
3R 5790884..5791040 1223..1379 100 -> Plus
3R 5791103..5791569 1380..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:53 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5789544..5789710 1..167 100 -> Plus
3R 5789770..5790824 168..1222 100 -> Plus
3R 5790884..5791040 1223..1379 100 -> Plus
3R 5791103..5791569 1380..1846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:07:37 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1615266..1615432 1..167 100 -> Plus
arm_3R 1615492..1616546 168..1222 100 -> Plus
arm_3R 1616606..1616762 1223..1379 100 -> Plus
arm_3R 1616825..1617291 1380..1846 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:37 Download gff for GH11341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5530375..5530541 1..167 100 -> Plus
3R 5531934..5532400 1380..1846 100   Plus
3R 5530601..5531655 168..1222 100 -> Plus
3R 5531715..5531871 1223..1379 100 -> Plus

GH11341.pep Sequence

Translation from 173 to 1681

> GH11341.pep
MDTYLFDGGRITKMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQL
EKQTRLGADMVSCSRVLVAICQICFDASNWNALNEYVSLLVRRRSQLKQA
VVKMIQECVTYVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILA
DIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYV
STQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLNRDTSFLNTSRHYQAIA
EPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEI
ELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYK
EILRLFMSKELINFDTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLI
EHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRP
AGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVMCAV
ED*

GH11341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16352-PA 503 GF16352-PA 1..503 1..502 2414 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13041-PA 502 GG13041-PA 1..502 1..502 2627 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18156-PA 496 GH18156-PA 1..496 1..502 2337 89 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn5-PA 502 CG1100-PA 1..502 1..502 2562 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10109-PA 497 GI10109-PA 1..497 1..502 2277 91.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24524-PA 500 GL24524-PA 1..500 1..502 2384 92.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10700-PA 500 GA10700-PA 1..500 1..502 2384 92.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10840-PA 502 GM10840-PA 1..502 1..502 2654 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19821-PA 483 GD19821-PA 1..483 1..502 2513 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23330-PA 497 GJ23330-PA 1..497 1..502 2320 90 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13432-PA 491 GK13432-PA 1..491 1..502 2343 90 Plus
Dwil\GK15274-PA 80 GK15274-PA 36..80 131..175 212 93.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10165-PA 502 GE10165-PA 1..502 1..502 2621 98 Plus

GH11341.hyp Sequence

Translation from 173 to 1681

> GH11341.hyp
MDTYLFDGGRITKMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQL
EKQTRLGADMVSCSRVLVAICQICFDASNWNALNEYVSLLVRRRSQLKQA
VVKMIQECVTYVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILA
DIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYV
STQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLNRDTSFLNTSRHYQAIA
EPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEI
ELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYK
EILRLFMSKELINFDTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLI
EHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRP
AGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVMCAV
ED*

GH11341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn5-PA 502 CG1100-PA 1..502 1..502 2562 100 Plus