Clone GH11358 Report

Search the DGRC for GH11358

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:113
Well:58
Vector:pOT2
Associated Gene/TranscriptCG11170-RB
Protein status:GH11358.pep: gold
Preliminary Size:1294
Sequenced Size:1166

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11170 2001-01-01 Release 2 assignment
CG11170 2002-05-15 Blastp of sequenced clone
CG11170 2003-01-01 Sim4 clustering to Release 3
CG11170 2008-04-29 Release 5.5 accounting
CG11170 2008-08-15 Release 5.9 accounting
CG11170 2008-12-18 5.12 accounting

Clone Sequence Records

GH11358.complete Sequence

1166 bp (1166 high quality bases) assembled on 2002-05-15

GenBank Submission: AY119501

> GH11358.complete
TTTACATCTGGTGATTATATTATAGTTTATTGTTTTACCGATTTTTTTTT
TTTAGTGGCCGCAACAACAGCTCCCTGTGATGCACCTGTCACACGGCCAA
CTGAAAGTGGTGCTCATTTTGGCCCTGCTGCAGGAGCTGCAGGTGAAGCC
GCAGCGAGAGGTGTTCCAGGAACTTTTCGAGAAGGATCTGCGCTTGTGTC
CAGACTGTTTCGTTGGACAGAGTGAGCCGTGCGGGGAAATCTTCCAGAAA
ATTGCAGAGCCCTCGGATTGGAGTAGACTTGTGAAAGCCATTTCGTTGCT
CGTTGATCGCCGAGCGATTTACTTTCTAAGGCTAAAAGACCGGGATCAGG
AAGTCCAGCTGGTGGCCAAAAGAAAAATCATTGATGCACAGAGTAATCAG
ATAAAAAATGTGAAAAAAGATTTCTATGAACTAGAGGAGCGACCTGGTGG
TTTTCATCTCTGCCGAACTCTGGCAAGGGAACCCCGCTTTGTTTCGTACT
TGGAGCAGCGTGGACATGCTGCCGCCAGTGTGTGGTTCTACATGATGTAC
TACGTTAGTCCGCTGCTTATGCAGGAACTGCATCTGCAGGGATTTCCAGT
GCCTACCACCTACGCCTCCTGCGGACTAACACATTTTCAATCCAATGCAG
GACGTACTTTAGCTCATTACGTCGATGCTGAAGAAGGTTTGCGTGTGGAG
CTGGCTCTCCAGTTGATCCAGCTCTCCCTCAAGCTGACTTTTGGATTCGC
GGACTTTCGCATTATCTTAACCGATTTCACGGCCGATAATTTGGCTTACG
ACGAAGACACCAAGAAGGTGTACCTCATTGATTTGGACTCCGTGGTCCTG
GTGGACGCTTCGTTCGCAGCAGGACATGCCGAAAAGTACGAGCCGCTGAC
CGGCGAGGGATTCACATTTGATGTCTCTGCATTCTGCTCCGGCCATCAGC
TGGATGCCAATATCTACCAGGCGTGCCTTTTGCTAAGGGATTACTTGCTT
AAGAATTTGGACAACGAAAAGCTGCAGCTGCTCCTGGAGCAGTGTGTAGC
ATGCCAAGATGACTTCTGTGATATGCGTTTCCAACATGCTTACGACCTAA
TAAAAGTGCTGGAAAGCAATAATTAAAGCCAATCGTTGGAGATCCACTAA
AAAAAAAAAAAAAAAA

GH11358.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-RB 1302 CG11170-RB 107..1255 1..1149 5745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18063943..18065023 1148..68 5210 98.8 Minus
chr2R 21145070 chr2R 18069289..18069358 70..1 350 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22177418..22178499 1149..68 5410 100 Minus
2R 25286936 2R 22182763..22182832 70..1 350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22178617..22179698 1149..68 5410 100 Minus
2R 25260384 2R 22183962..22184031 70..1 350 100 Minus
Blast to na_te.dros performed 2019-03-15 12:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 167..210 56..14 118 77.3 Minus

GH11358.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:41:57 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18063943..18065020 71..1148 98 <- Minus
chr2R 18069289..18069358 1..70 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:24 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1047 80..1126 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:49 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1047 80..1126 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:48:10 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1047 80..1126 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:25 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1047 80..1126 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:07:13 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1047 80..1126 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:47 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1126 1..1126 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:49 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1148 1..1148 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:48:10 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 48..1195 1..1148 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:25 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1126 1..1126 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:07:13 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 48..1195 1..1148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:41:57 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22177419..22178496 71..1148 100 <- Minus
2R 22182763..22182832 1..70 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:41:57 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22177419..22178496 71..1148 100 <- Minus
2R 22182763..22182832 1..70 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:41:57 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22177419..22178496 71..1148 100 <- Minus
2R 22182763..22182832 1..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:48:10 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18064924..18066001 71..1148 100 <- Minus
arm_2R 18070268..18070337 1..70 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:47 Download gff for GH11358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22178618..22179695 71..1148 100 <- Minus
2R 22183962..22184031 1..70 100   Minus

GH11358.pep Sequence

Translation from 79 to 1125

> GH11358.pep
MHLSHGQLKVVLILALLQELQVKPQREVFQELFEKDLRLCPDCFVGQSEP
CGEIFQKIAEPSDWSRLVKAISLLVDRRAIYFLRLKDRDQEVQLVAKRKI
IDAQSNQIKNVKKDFYELEERPGGFHLCRTLAREPRFVSYLEQRGHAAAS
VWFYMMYYVSPLLMQELHLQGFPVPTTYASCGLTHFQSNAGRTLAHYVDA
EEGLRVELALQLIQLSLKLTFGFADFRIILTDFTADNLAYDEDTKKVYLI
DLDSVVLVDASFAAGHAEKYEPLTGEGFTFDVSAFCSGHQLDANIYQACL
LLRDYLLKNLDNEKLQLLLEQCVACQDDFCDMRFQHAYDLIKVLESNN*

GH11358.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13244-PA 347 GF13244-PA 1..347 1..346 1242 66.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20713-PA 346 GG20713-PA 1..345 1..347 1560 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-PD 348 CG11170-PD 1..348 1..348 1807 100 Plus
CG11170-PC 348 CG11170-PC 1..348 1..348 1807 100 Plus
CG11170-PB 348 CG11170-PB 1..348 1..348 1807 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11832-PA 351 GL11832-PA 1..345 1..344 1247 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10814-PB 351 GA10814-PB 1..345 1..344 1244 66.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15658-PA 350 GM15658-PA 1..350 1..348 1670 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19336-PA 345 GK19336-PA 1..340 1..348 766 50.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11696-PA 345 GE11696-PA 1..345 1..348 1592 86.5 Plus

GH11358.hyp Sequence

Translation from 79 to 1125

> GH11358.hyp
MHLSHGQLKVVLILALLQELQVKPQREVFQELFEKDLRLCPDCFVGQSEP
CGEIFQKIAEPSDWSRLVKAISLLVDRRAIYFLRLKDRDQEVQLVAKRKI
IDAQSNQIKNVKKDFYELEERPGGFHLCRTLAREPRFVSYLEQRGHAAAS
VWFYMMYYVSPLLMQELHLQGFPVPTTYASCGLTHFQSNAGRTLAHYVDA
EEGLRVELALQLIQLSLKLTFGFADFRIILTDFTADNLAYDEDTKKVYLI
DLDSVVLVDASFAAGHAEKYEPLTGEGFTFDVSAFCSGHQLDANIYQACL
LLRDYLLKNLDNEKLQLLLEQCVACQDDFCDMRFQHAYDLIKVLESNN*

GH11358.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-PD 348 CG11170-PD 1..348 1..348 1807 100 Plus
CG11170-PC 348 CG11170-PC 1..348 1..348 1807 100 Plus
CG11170-PB 348 CG11170-PB 1..348 1..348 1807 100 Plus