Clone GH11415 Report

Search the DGRC for GH11415

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:114
Well:15
Vector:pOT2
Associated Gene/TranscriptCG4766-RA
Protein status:GH11415.pep: gold
Preliminary Size:2673
Sequenced Size:2691

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4766 2000-02-14 Blastp of sequenced clone
CG4766 2001-01-01 Release 2 assignment
CG4766 2003-01-01 Sim4 clustering to Release 3
CG4766 2008-04-29 Release 5.5 accounting
CG4766 2008-08-15 Release 5.9 accounting
CG4766 2008-12-18 5.12 accounting

Clone Sequence Records

GH11415.complete Sequence

2691 bp (2691 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145667

> GH11415.complete
CCGAGATGGCGGATTTGTTAGATACTGGCATGGATATTGAGATACTTCGC
TGCAGCCGGGCCAAACTGCACTTTCAGCGCTTTTTTTTTTATCTGCCCGA
AGCTGTAAATATCCGCGAGATTTACAACGCCAGCCAGCCGCGACTTCGGT
ATCGGTATCAGTATCGTTTGGCTGACTTCGATTCGTACTCGGAATCGGCA
TCGGCATCGGCAGCGGCATCAGGCTGGGGGTATCGCTATTGAGCGCAGCG
CATCATTCGGTCAGCAATTCGCCAATGCAGATACTGTATCTGCGGGCAGC
AGCTACTAAAATTGAAGAGCCAAAAGCTAAAATACCCATATACATACTCG
GTACACCGCGGTCATCGTCGTCGTCGTGCTCCACTTGTGCCCATTGTTGG
TTCTGCTGTCACCGTAACTCACAATTGAATTGTTCCTTTGTTCTGTCCCG
TCCAGAAGGAGACCCGCTGCCGAATTTCGCATAATTGGCTGGCTTTTAAG
TTGGCCGCCAGACCAAGTGTCGCCGGTAAAAAGATACATCTACAGATAGA
TCGTTGTACTTTTGGTACTTTTGGAGCTTGGTGGAACTCGAACTGAGTAC
CATGCTGGTGCCGCCGGACATGATGGCCGCCCAGACGCGCATGGTCTATC
AGATGAATCGATTCTGCACGGAGAGGGTTCAGGCCAGGATGTACAAGACG
GCCACCGCCATCCGGGAGATCTGCAAGATCGTCCAGGACATCCTCAAAGA
GGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCCTCGTCGAGTGCAATG
GCAGATTCGAGGGCGTTGAAGTGATATCCCCGAATGAATTCGAGATAGTG
CTGTATCTGAATCAAATGGGTGTCTTCAATTTCGTGGACGATGGCACCTT
GCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAAGGAAGCGGTCCATGT
CCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTATTTGTCCTCCCGGAAG
ATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGCGTGCGATAAAAGTGT
CTACCGCGACATGGTCAAAATGGTGGGCGACACCAGCGAGGTGAAGTTGC
GCATTCGGGAGCGATTCGTGGTCCAGATTACGCCGGCATTTAAGTGCTCA
GGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGTACCACATCTCCCGTG
GCCACATCCCAACATCGTGGCGGAGGTCAAGACCGAGGGCTTCGATCTTC
TGTCCAAGGAGAGCGTCATCATGCAGAACAAGAACAACAATGCCGCCAGC
ATGGAGGGCGATGCCTGGGTGCTCAGCTTCTTCGAGGCCGAAAACCGTCT
GCTGCAAGGTGGCTGTCGTCGACGTTGTCTGAGCATGCTGAAGACCCTGA
GGGACAGGCATCTGGATTTACCAGGCAATCCCATCAGTGCGTATCACCTG
AAGAACCTGCTGCTCTACGAGTGCGAGAAGCATCCGCGGGACTTTGAGTG
GGACGAGGGCTGCATCGCTGACCGCATCAATGGGATATTCCTGCAGCTGA
TATCCTGTCTGCAGTATCGCCGTTGTCCCCACTACTTCCTTCCCGCACTG
GACATGTTCAAGGGTAAATCCCCCAGTGCTTTGGAGCAGGCGGCCAAGCA
GGTGTGGCGCTTGACCCGCGAGCTCCTCACAAATGCCAACGCCTTTGAGA
AGTTGTAAGGTGTCAGAGGTTAAAGGTCACGACTGGTCGATAATGGCGAT
GACATTTTTGGCAGGAATTTATAATTATTAACCGCACTCATAGAGTGAAT
ATTGTTCTTATTTTTTTACCCGTTAGATTAGATTCTTTTGCTCCATTCAC
ATATTGTTGATTTGACTAACTTCTTCTTGCAGTCACGCAAATATCGACCC
ATCCGAAGTCGGGGGAGTGCTGATGTGTATGAGGTGCCAGGCAAGTCGGA
GATGAAAGGTACATATGCGAATAAATACATACGCATAAGCACAGCTCCTT
GGCGGCCATTTTGTGCCATGTCTGTGTATATGTGACTGTCTGCGTGCGTG
CGCGTGTGTGTGTGTGTGTGTGCGAAAGTGTTAATGCGAAGATGCGAGAT
AAGTCCACTCCCCATTCGACTCGACTCGACTCGACTCAACTCGACTCGAT
GCGATTCGAGATATATATCTGCCCATCCAAGCGATCCGGCTAAGCCTCGA
ATATTGTTTTTAATAACTCGCCCCTCGACGCTCACGACACATCCTTTGTT
TGGCCGGCGAACAATGGACTCGCCGGTTCGCAAGTCCGGATGGAAAAATC
GAAAAATCGAGAGAATGAAAAAAGAGCATTTGTCCAGGCGGCTCCTTTTA
CACGGTGGCTATACACACTCGACGTATACGATTGTTTCACAGTTCGCAGA
TCCTAGATCAAAGCAAAACGAACATACAAAAAATATATAATATATACATA
TAGCGCTAGAACAGAGGGAGATACAGATTCCATTGATCGTTCCAAGTCCA
ACTTAACATTGTTTTACTACTTACATATACATATACACATATTTATGTAT
GTCGATGTCTATTATGCGATGCCTAACATTTACCACGATTATCCGCAGTT
TGTTTTAAGTACAACATAATCCTAGATTGCTAATGTAAAAAATGCTTGAA
TAAATTCAAGGATAGCCAAAGGCAAAAAAAAAAAAAAAAAA

GH11415.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-RA 2815 CG4766-RA 98..2772 1..2675 13375 100 Plus
mab-21-RA 2113 mab-21-RA 590..1045 806..1261 1065 82.2 Plus
mab-21.a 1173 mab-21.a 561..1016 806..1261 1065 82.2 Plus
mab-21-RA 2113 mab-21-RA 1075..1434 1300..1659 840 82.2 Plus
mab-21.a 1173 mab-21.a 1046..1104 1300..1358 220 91.5 Plus
mab-21-RA 2113 mab-21-RA 512..565 728..781 165 87 Plus
mab-21.a 1173 mab-21.a 483..536 728..781 165 87 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5889822..5891146 2673..1357 6170 98.1 Minus
chrX 22417052 chrX 5892312..5893108 804..1 3725 98.1 Minus
chrX 22417052 chrX 5891253..5891811 1360..802 2735 99.3 Minus
chrX 22417052 chrX 5904331..5904955 1361..728 1230 80 Minus
chrX 22417052 chrX 5901116..5901410 1659..1365 650 81.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5997506..5998824 2675..1357 6595 100 Minus
X 23542271 X 5999994..6000797 804..1 4020 100 Minus
X 23542271 X 5998945..5999503 1360..802 2795 100 Minus
X 23542271 X 6012072..6012696 1361..728 1260 80.3 Minus
X 23542271 X 6008857..6009151 1659..1365 650 81.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6005604..6006922 2675..1357 6595 100 Minus
X 23527363 X 6008092..6008895 804..1 4020 100 Minus
X 23527363 X 6007043..6007601 1360..802 2795 100 Minus
X 23527363 X 6020261..6020716 1261..806 1065 82.2 Minus
X 23527363 X 6016955..6017249 1659..1365 650 81.3 Minus
X 23527363 X 6020170..6020231 1361..1300 235 91.9 Minus
X 23527363 X 6020741..6020794 781..728 165 87 Minus
Blast to na_te.dros performed 2019-03-16 03:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6358..6477 2427..2550 140 62.4 Plus

GH11415.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:52:35 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5892312..5893108 1..804 98   Minus
chrX 5890478..5891144 1359..2018 98 <- Minus
chrX 5891255..5891808 805..1358 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:28 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..1107 602..1708 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:01 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..1107 602..1708 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:32 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..1107 602..1708 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:28 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..1107 602..1708 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:32 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..1107 602..1708 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:03 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..2673 1..2673 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:01 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..2673 1..2673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:32 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..2673 1..2673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:29 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..2673 1..2673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:32 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..2673 1..2673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:35 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
X 5997508..5998822 1359..2673 100 <- Minus
X 5998947..5999500 805..1358 100 <- Minus
X 5999994..6000797 1..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:35 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
X 5997508..5998822 1359..2673 100 <- Minus
X 5998947..5999500 805..1358 100 <- Minus
X 5999994..6000797 1..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:35 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
X 5997508..5998822 1359..2673 100 <- Minus
X 5998947..5999500 805..1358 100 <- Minus
X 5999994..6000797 1..804 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:32 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5892980..5893533 805..1358 100 <- Minus
arm_X 5891541..5892855 1359..2673 100 <- Minus
arm_X 5894027..5894830 1..804 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:03 Download gff for GH11415.complete
Subject Subject Range Query Range Percent Splice Strand
X 6005606..6006920 1359..2673 100 <- Minus
X 6007045..6007598 805..1358 100 <- Minus
X 6008092..6008895 1..804 100   Minus

GH11415.pep Sequence

Translation from 601 to 1707

> GH11415.pep
MLVPPDMMAAQTRMVYQMNRFCTERVQARMYKTATAIREICKIVQDILKE
VELQEPRFISSLVECNGRFEGVEVISPNEFEIVLYLNQMGVFNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSSRKIRARFQTLVAQACDKSV
YRDMVKMVGDTSEVKLRIRERFVVQITPAFKCSGIWPRSAAHWPVPHLPW
PHPNIVAEVKTEGFDLLSKESVIMQNKNNNAASMEGDAWVLSFFEAENRL
LQGGCRRRCLSMLKTLRDRHLDLPGNPISAYHLKNLLLYECEKHPRDFEW
DEGCIADRINGIFLQLISCLQYRRCPHYFLPALDMFKGKSPSALEQAAKQ
VWRLTRELLTNANAFEKL*

GH11415.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22067-PA 369 GF22067-PA 1..369 1..368 1927 96.2 Plus
Dana\GF22066-PA 365 GF22066-PA 1..365 1..368 1607 77.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18459-PA 368 GG18459-PA 1..368 1..368 1954 97.6 Plus
Dere\GG18458-PA 365 GG18458-PA 1..365 1..368 1607 77.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24596-PA 368 GH24596-PA 1..368 1..368 1865 91.8 Plus
Dgri\GH24594-PA 365 GH24594-PA 1..365 1..368 1607 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-PA 368 CG4766-PA 1..368 1..368 1941 100 Plus
mab-21-PA 365 CG4746-PA 1..365 1..368 1567 77.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15265-PA 369 GI15265-PA 1..369 1..368 1925 95.1 Plus
Dmoj\GI15264-PA 365 GI15264-PA 1..365 1..368 1607 77.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14962-PA 368 GL14962-PA 1..368 1..368 1895 92.7 Plus
Dper\GL14960-PA 365 GL14960-PA 1..365 1..368 1607 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18415-PA 368 GA18415-PA 1..368 1..368 1904 93.2 Plus
Dpse\GA18400-PA 365 GA18400-PA 1..365 1..368 1607 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12604-PA 355 GM12604-PA 1..355 1..368 1878 94.8 Plus
Dsec\GM12602-PA 220 GM12602-PA 1..220 146..368 975 77.1 Plus
Dsec\GM12601-PA 109 GM12601-PA 1..102 1..102 370 66.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16222-PA 368 GD16222-PA 1..368 1..368 1976 99.2 Plus
Dsim\GD16221-PA 150 GD16221-PA 1..150 216..368 635 75.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14839-PA 368 GJ14839-PA 1..368 1..368 1927 95.1 Plus
Dvir\GJ14837-PA 365 GJ14837-PA 1..365 1..368 1607 77.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19727-PA 368 GK19727-PA 1..368 1..368 1937 95.4 Plus
Dwil\GK19726-PA 365 GK19726-PA 1..365 1..368 1602 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15682-PA 368 GE15682-PA 1..368 1..368 1948 97.3 Plus
Dyak\GE15680-PA 365 GE15680-PA 1..365 1..368 1607 77.7 Plus

GH11415.hyp Sequence

Translation from 601 to 1707

> GH11415.hyp
MLVPPDMMAAQTRMVYQMNRFCTERVQARMYKTATAIREICKIVQDILKE
VELQEPRFISSLVECNGRFEGVEVISPNEFEIVLYLNQMGVFNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSSRKIRARFQTLVAQACDKSV
YRDMVKMVGDTSEVKLRIRERFVVQITPAFKCSGIWPRSAAHWPVPHLPW
PHPNIVAEVKTEGFDLLSKESVIMQNKNNNAASMEGDAWVLSFFEAENRL
LQGGCRRRCLSMLKTLRDRHLDLPGNPISAYHLKNLLLYECEKHPRDFEW
DEGCIADRINGIFLQLISCLQYRRCPHYFLPALDMFKGKSPSALEQAAKQ
VWRLTRELLTNANAFEKL*

GH11415.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-PA 368 CG4766-PA 1..368 1..368 1941 100 Plus
mab-21-PA 365 CG4746-PA 1..365 1..368 1567 77.7 Plus