Clone GH11459 Report

Search the DGRC for GH11459

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:114
Well:59
Vector:pOT2
Associated Gene/TranscriptIrk2-RA
Protein status:GH11459.pep: gold
Preliminary Size:1937
Sequenced Size:1914

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4370 2001-07-04 Blastp of sequenced clone
CG4370 2003-01-01 Sim4 clustering to Release 3
Irk2 2008-04-29 Release 5.5 accounting
Irk2 2008-08-15 Release 5.9 accounting
Irk2 2008-12-18 5.12 accounting

Clone Sequence Records

GH11459.complete Sequence

1914 bp (1914 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051445

> GH11459.complete
TCGGCCGTCATTTAATCCATTGGTCGGACTTGCGGATCCGTAGATTCGCT
GTGACAGTTGCTCTGTGGCTCTGAGTGCCCTCTGATCTCCAGTCCTCAGA
TCATCTCATTTCTGGAACGACACGCGTCGGCAAAACATAACGAAACGGAG
CTTGTGAAACTAAAACATTGTGCCTATTATCAGTTCGCAACATGCCATCA
TAAAGTGCCAAAAGTTTGTTGAGGCTCTTTTGCAAAACAATGGAGATCTA
ACAAAATCTCGATTTAAGGGTGTCAATCAATTTAATATCTAAAAGATGCG
TTTCAATTTCTCCACCCACTCGGCGGCCCCCACCTCTACGACCATACCAA
CAACAACACAGGCAAATGGAGGCGAACAGGCCACCCAACCGCTCAAGAAG
GCCATCGAAGCGGATCCCGATTCGCTGGACAGTGTGATCAGCAATCCTCA
ATCCTATCCCATCACAATTGTGCCGAATAGGCCGACCAGCTACTATGGCC
TATCCCAAAATGGCAAGCCGTTCCCCCGCCAACCGAGCTGCAGATCTCGC
AATTTCCGGCCTGGCAGCATGAGACGTGTTCGCCGACGAGCGGTCTTCAA
AAATGGTGACTGCAATGTGGTGCAGAAGCACCTGCAAAGACGCCGAGTTC
GTTTCCTGCAGGACATGTACACCACCATGGTGGATTGGCAGTGGCGGTGG
ACTCTCTTGGCCTTCGCACTCAGCTTTATCCTGTCTTGGCTCTTCTTTGC
TCTCATCTGGTGGCTGATTATCTACACACACGGAGACTTGGAAGAGCCTC
ACTTGCCAGAAAACCAAGAGGAATCTGGTTGGGCGCCTTGTGTTTCGGCC
ATCGATGGCTTTACTTCCTGCTTCCTGTTCTCCATTGAAACGCAGCACAC
TATTGGCTACGGTGTCCGAACCACCTCGCCCGAGTGTCCAGAGGCCATCT
TCATGATGTGCTTCCAGTCCATCTATGGCGTGATGTCTTCAGCATTTATG
GCCGGAATAGTGTTTGCCAAGATGACAAGGGCCAAACAGCGGGCACAGAC
TTTGTTGTTCTCCAAACACGCCGTAATTTGCCAACGTGATGGCACCCTTT
CGCTGATGTTCCGTGTGGGTGACATGCGAAAATCACACATCATTGGAGCC
GGAGTGAGGGCTCAGTTGATCAGGACAAAGAGCACCAAGGAGGGTGAGGT
GATGACACAGTACTTCACAGAACTGGAGATCGGTACTGATGACTCCGGCT
CTGATTTGTTCTTCATCTGGCCCATGGTCATCGAGCACAAGATCGACGAG
AACTCACCGCTCTATAATCTTAATGCCACTGATATGCTGCAGGATAAGTT
CGAAATCGTGGTGATCCTAGAGGGCACCGTGGAGTCCACTGGACAGAGCA
CTCAAGCCAGATCCAGCTATATTAACACTGAGATCCTTTGGGGACATCGT
TTCGATCCAGTGGTGTTGTACAACAAGGATCTGCAGGCCTATGAAATCGA
CTACGCTCGCTTTAACGAAACCACTCAGGTGGACACTCCGTTGTGCAGTG
CTCGGGAATTGAACGAGATCTACAAGATCCAGGAGGGATTCCGCACACCA
GAAACCACCTTTACCATGCGTCAACTGTCCCACAATCATTCTGACCAGGC
CTCCTAGGCGCAGATTCCAGTGTTTCGTCCCTTGTGTTGCTATAGTTGTA
ATCGTGTTTGTCCTATCTTCCCCATCGACCCAATCGAGGTGCTCCTGCAG
TTCCGGCTATCAGACACCTGGAAGGCAAAGCCGCCTGCGTTGGCAGCTCT
CGGTGCCCTTGTAATGGTCCTCGACTATCAACGCACTTAAATGTACGAGT
TACCCTACGAAAATAAGTTAATAAACGCTTTAGTCAGAGACTACAAAAAA
AAAAAAAAAAAAAA

GH11459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-RA 2076 Irk2-RA 64..1958 1..1895 9475 100 Plus
Irk2.d 2262 Irk2.d 18..1912 1..1895 9475 100 Plus
Irk2.a 1848 Irk2.a 64..1664 1..1601 8005 100 Plus
Irk2.a 1848 Irk2.a 1665..1843 1717..1895 895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19337753..19338537 1601..817 3835 99.2 Minus
chr3R 27901430 chr3R 19342540..19342834 295..1 1430 99 Minus
chr3R 27901430 chr3R 19338589..19338866 818..541 1360 99.3 Minus
chr3R 27901430 chr3R 19341847..19342096 543..294 1235 99.6 Minus
chr3R 27901430 chr3R 19337343..19337520 1894..1717 875 99.4 Minus
chr3R 27901430 chr3R 19337584..19337702 1716..1599 545 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23514377..23515161 1601..817 3925 100 Minus
3R 32079331 3R 23519151..23519445 295..1 1475 100 Minus
3R 32079331 3R 23515213..23515490 818..541 1390 100 Minus
3R 32079331 3R 23518458..23518707 543..294 1250 100 Minus
3R 32079331 3R 23513967..23514145 1895..1717 895 100 Minus
3R 32079331 3R 23514209..23514326 1716..1599 590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23255208..23255992 1601..817 3925 100 Minus
3R 31820162 3R 23259982..23260276 295..1 1475 100 Minus
3R 31820162 3R 23256044..23256321 818..541 1390 100 Minus
3R 31820162 3R 23259289..23259538 543..294 1250 100 Minus
3R 31820162 3R 23254798..23254976 1895..1717 895 100 Minus
3R 31820162 3R 23255040..23255157 1716..1599 590 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:47:03 has no hits.

GH11459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:48:20 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19337343..19337520 1717..1894 99 <- Minus
chr3R 19337584..19337699 1602..1716 99 <- Minus
chr3R 19337753..19338535 819..1601 99 <- Minus
chr3R 19338589..19338863 544..818 99 <- Minus
chr3R 19341847..19342094 296..543 99 <- Minus
chr3R 19342540..19342834 1..295 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:32 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1362 296..1657 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:53 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1362 296..1657 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:40:13 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1362 296..1657 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:13 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1362 296..1657 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:15:42 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1362 296..1657 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:35 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1894 1..1894 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:53 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1894 1..1894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:13 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1894 1..1894 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:13 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1894 1..1894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:15:42 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1894 1..1894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:20 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23519151..23519445 1..295 100   Minus
3R 23514377..23515159 819..1601 100 <- Minus
3R 23515213..23515487 544..818 100 <- Minus
3R 23518458..23518705 296..543 100 <- Minus
3R 23513968..23514145 1717..1894 100 <- Minus
3R 23514209..23514323 1602..1716 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:20 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23519151..23519445 1..295 100   Minus
3R 23514377..23515159 819..1601 100 <- Minus
3R 23515213..23515487 544..818 100 <- Minus
3R 23518458..23518705 296..543 100 <- Minus
3R 23513968..23514145 1717..1894 100 <- Minus
3R 23514209..23514323 1602..1716 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:20 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23519151..23519445 1..295 100   Minus
3R 23514377..23515159 819..1601 100 <- Minus
3R 23515213..23515487 544..818 100 <- Minus
3R 23518458..23518705 296..543 100 <- Minus
3R 23513968..23514145 1717..1894 100 <- Minus
3R 23514209..23514323 1602..1716 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:13 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19339690..19339867 1717..1894 100 <- Minus
arm_3R 19339931..19340045 1602..1716 100 <- Minus
arm_3R 19340099..19340881 819..1601 100 <- Minus
arm_3R 19340935..19341209 544..818 100 <- Minus
arm_3R 19344180..19344427 296..543 100 <- Minus
arm_3R 19344873..19345167 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:04 Download gff for GH11459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23255208..23255990 819..1601 100 <- Minus
3R 23256044..23256318 544..818 100 <- Minus
3R 23259289..23259536 296..543 100 <- Minus
3R 23259982..23260276 1..295 100   Minus
3R 23254799..23254976 1717..1894 100 <- Minus
3R 23255040..23255154 1602..1716 100 <- Minus

GH11459.pep Sequence

Translation from 295 to 1656

> GH11459.pep
MRFNFSTHSAAPTSTTIPTTTQANGGEQATQPLKKAIEADPDSLDSVISN
PQSYPITIVPNRPTSYYGLSQNGKPFPRQPSCRSRNFRPGSMRRVRRRAV
FKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLF
FALIWWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQ
HTIGYGVRTTSPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRA
QTLLFSKHAVICQRDGTLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEG
EVMTQYFTELEIGTDDSGSDLFFIWPMVIEHKIDENSPLYNLNATDMLQD
KFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPVVLYNKDLQAYE
IDYARFNETTQVDTPLCSARELNEIYKIQEGFRTPETTFTMRQLSHNHSD
QAS*

GH11459.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18763-PA 453 GF18763-PA 1..453 1..453 2284 94.3 Plus
Dana\GF16984-PA 570 GF16984-PA 53..391 91..425 1115 60.2 Plus
Dana\GF14817-PA 438 GF14817-PA 105..437 92..427 608 34.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12432-PA 437 GG12432-PA 68..437 84..453 2011 99.5 Plus
Dere\GG11193-PA 551 GG11193-PA 27..377 78..425 1110 59.1 Plus
Dere\GG21688-PA 442 GG21688-PA 107..428 92..416 582 34 Plus
Dere\GG12431-PA 85 GG12431-PA 3..85 1..83 400 91.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20768-PA 535 GH20768-PA 141..535 56..453 1938 90 Plus
Dgri\GH19549-PA 561 GH19549-PA 39..377 91..425 1114 60.8 Plus
Dgri\GH10563-PA 441 GH10563-PA 101..422 92..416 599 35.3 Plus
Dgri\GH20768-PA 535 GH20768-PA 1..84 1..82 235 61.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-PA 453 CG4370-PA 1..453 1..453 2396 100 Plus
Irk2-PD 454 CG4370-PD 1..454 1..453 2384 99.8 Plus
Irk2-PB 437 CG4370-PB 68..437 84..453 1957 100 Plus
Irk2-PC 451 CG4370-PC 68..429 84..445 1868 97.8 Plus
Irk1-PH 526 CG44159-PH 10..348 91..425 1066 60.2 Plus
Irk1-PC 526 CG44159-PC 10..348 91..425 1066 60.2 Plus
Irk1-PD 532 CG44159-PD 16..354 91..425 1066 60.2 Plus
Irk1-PE 540 CG44159-PE 24..362 91..425 1066 60.2 Plus
Irk1-PB 555 CG44159-PB 39..377 91..425 1066 60.2 Plus
Irk1-PG 652 CG44159-PG 136..474 91..425 1066 60.2 Plus
Irk1-PF 652 CG44159-PF 136..474 91..425 1066 60.2 Plus
Irk3-PA 442 CG10369-PA 107..432 92..420 570 34.2 Plus
Irk3-PD 446 CG10369-PD 111..436 92..420 570 34.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10708-PA 532 GI10708-PA 163..532 84..453 1971 96.8 Plus
Dmoj\GI22262-PA 556 GI22262-PA 27..377 78..425 1114 59.1 Plus
Dmoj\GI16851-PA 512 GI16851-PA 87..407 93..416 603 36.6 Plus
Dmoj\GI10708-PA 532 GI10708-PA 1..87 1..82 243 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13847-PA 453 GL13847-PA 1..453 1..453 2286 93.6 Plus
Dper\GL24490-PA 549 GL24490-PA 39..377 91..425 1107 59.6 Plus
Dper\GL14708-PA 514 GL14708-PA 211..498 126..416 530 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18138-PA 453 GA18138-PA 1..453 1..453 2281 93.4 Plus
Dpse\GA18138-PB 440 GA18138-PB 71..440 84..453 1978 97.6 Plus
Dpse\GA18138-PC 454 GA18138-PC 71..424 84..437 1881 96.9 Plus
Dpse\GA19830-PA 547 GA19830-PA 39..377 91..425 1107 59.6 Plus
Dpse\GA19830-PB 523 GA19830-PB 15..353 91..425 1106 59.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23564-PA 732 GM23564-PA 363..732 84..453 2019 99.7 Plus
Dsec\GM26492-PA 549 GM26492-PA 27..377 78..425 1109 59.1 Plus
Dsec\GM17065-PA 442 GM17065-PA 107..432 92..420 593 34.5 Plus
Dsec\GM23564-PA 732 GM23564-PA 212..294 1..83 437 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18380-PA 523 GD18380-PA 154..523 84..453 2016 99.7 Plus
Dsim\GD21006-PA 549 GD21006-PA 27..377 78..425 1110 59.1 Plus
Dsim\GD21812-PA 442 GD21812-PA 107..432 92..420 595 34.8 Plus
Dsim\GD18380-PA 523 GD18380-PA 3..85 1..83 430 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23123-PA 457 GJ23123-PA 1..457 1..453 2223 91 Plus
Dvir\GJ24053-PA 550 GJ24053-PA 24..362 91..425 1116 60.8 Plus
Dvir\GJ17200-PA 443 GJ17200-PA 96..421 92..416 584 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13155-PA 436 GK13155-PA 67..436 84..453 1989 98.1 Plus
Dwil\GK14058-PA 512 GK14058-PA 1..339 91..425 1112 60.2 Plus
Dwil\GK12266-PA 521 GK12266-PA 12..348 93..425 1082 59.3 Plus
Dwil\GK18176-PA 453 GK18176-PA 111..432 92..416 600 36.8 Plus
Dwil\GK22277-PA 69 GK22277-PA 3..69 19..83 208 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Irk2-PA 669 GE23953-PA 300..669 84..453 2013 99.5 Plus
Dyak\GE10360-PA 553 GE10360-PA 27..377 78..425 1111 59.1 Plus
Dyak\GE12711-PA 439 GE12711-PA 105..436 93..429 589 34 Plus
Dyak\Irk2-PA 669 GE23953-PA 141..231 1..83 337 83.5 Plus

GH11459.hyp Sequence

Translation from 295 to 1656

> GH11459.hyp
MRFNFSTHSAAPTSTTIPTTTQANGGEQATQPLKKAIEADPDSLDSVISN
PQSYPITIVPNRPTSYYGLSQNGKPFPRQPSCRSRNFRPGSMRRVRRRAV
FKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLF
FALIWWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQ
HTIGYGVRTTSPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRA
QTLLFSKHAVICQRDGTLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEG
EVMTQYFTELEIGTDDSGSDLFFIWPMVIEHKIDENSPLYNLNATDMLQD
KFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPVVLYNKDLQAYE
IDYARFNETTQVDTPLCSARELNEIYKIQEGFRTPETTFTMRQLSHNHSD
QAS*

GH11459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-PA 453 CG4370-PA 1..453 1..453 2396 100 Plus
Irk2-PD 454 CG4370-PD 1..454 1..453 2384 99.8 Plus
Irk2-PB 437 CG4370-PB 68..437 84..453 1957 100 Plus
Irk2-PC 451 CG4370-PC 68..429 84..445 1868 97.8 Plus
Irk1-PH 526 CG44159-PH 10..348 91..425 1066 60.2 Plus