Clone GH11472 Report

Search the DGRC for GH11472

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:114
Well:72
Vector:pOT2
Associated Gene/TranscriptCG30118-RA
Protein status:GH11472.pep: gold
Preliminary Size:817
Sequenced Size:2289

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5544 2001-01-01 Release 2 assignment
CG16859 2001-01-01 Release 2 assignment
CG30118 2001-07-04 Blastp of sequenced clone
CG30118 2003-01-01 Sim4 clustering to Release 3
CG30118 2008-04-29 Release 5.5 accounting
CG30118 2008-08-15 Release 5.9 accounting
CG30118 2008-12-18 5.12 accounting

Clone Sequence Records

GH11472.complete Sequence

2289 bp (2289 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051446

> GH11472.complete
CGCTTGTGTAATTAACGGATGCGGTGTCAACTAGTAAAAATGCAATACCA
TCCCAAGTCGAATAAACTTTGATATTGCCCAAACAATCGAATGTGGTACA
GATTGTGAAAGTAGCGTGCAACGCTGCCGTCTACTTAAACTTGTAAAGTT
CCTCCTGCTCCGTCATCAGACTTTCTGATAGCATCCCGCGCAATCCAAAT
TCTGGGAATGATTTCAGCGCGCCAGTGCGTCATTTAAATTGCAAAGCGCA
CGAGTCCGAGCCACCAGCTGGATCTCCAGGATTCATAGACCAGGATCGAG
ACCAGGTCGGCAGAAAAGCACGAGGAGCCACAGGAGTTGCCCGAGTTCCA
CAGGCATAACCTTAAACGGCACGTGCACCGCGCGTAGAAGAGTTCTCTGC
GTGCCACCACACAGCGAATCGGTTGCTCTCCCAAAAAACAAACACGCAAT
ACCAAATTCCCGAAGTCGAAGACATGGCCACCCTCCTCAGCAACGGACAG
CAGTCGGTAATGGCCAGCACCAGTAATGGTCAGGAGCAGCAACGGCACCA
GGACGAACCGGAGCAGCAGCAGCAGGTCGAGATCAGAAAGTCGAGCTCAC
CGAAACCAGGCGCCATGCCCAGCTTGAAGCTGAACAGAATGGGTTCGGTG
TCACCGAAAGATAAACGAGTCTACAAAATCGTCCTCACTGGCGGGCCTTG
CGGCGGAAAGACGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACC
TTGGATGGAAGGTATTCCGCGTGCCTGAAACGGCCACTGTTTTACTCAGT
GGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGCCTACAAGTTCCA
GGAGAATCTGATCCGCACCATGGTTCAAATTGAGAACACCTACTTTGAGC
TGGGCAACTCCAGCAATCGCAACTGTCTGATAATCTGCGATCGCGGCGTT
ATGGATGCCAGTGCATACATATCCAAGGATAAATGGGAAAAGATGATGGC
GGGCAATAATTGGAATCCCGTGGAGATGCGCGACAATCGTTACAACCAAA
TCCTGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACA
GAGGACCATGCCTGTCGCTCGGAGGGCGTTGATTTGGCCCGGGAACTGGA
CTACAAATCCGCCGCCGCCTGGGTTGGCCATCCCTACTTCGATGTGATCG
ACAACTCCACCAACTTCGAGACCAAGATGAATCGCATGATTGAGTCGGTG
TGCCAGAAATTGGGCATTGATATTGGCGACCGTTTGCAGGCCACGTCGCG
CAAGCTGAAATATTTGGTGGCCCTTTTGCCGCCGGACAGCGAGTTTCCGC
CCTTCCAGGATTTCGATGTCGTACATCATTATCTGCAGTCCGCCGGACCC
AAGGTGCAGGCTCGCCTTCGCAAGCGTGGACAGAAGAACCACTGGAGCTA
CATCCACACGCAGCGGCGTCCAAACGTTCACGGGCAGGCCCGCATTGAGG
TGAAGACCCAGCTGACGCATCGTGACTACATGAACTTGCTGGCCCAGCGC
GACGATGCTCACTTCACCATCTACAAGAAGCGCCGCTGCTTCCTTATCAA
CAACCAATATTTTCAGCTTGATATTTATAAGGAGCCAGGCCACCCACGCT
GCAAGGGATTGGTGCTTTTGGAGACGTATTCGTCACTCACCGGCGATGCC
CTGAAGAACTGCATGCCCAAGTTCCTGAACATTGTAAAGGAGGTGACCGG
CGATCCGGACTACTCCATGTTTAATCTATCCCTCAAGGAGGACTGGAGCA
CCACGAAGAAGTTTTGCCGATCGGCGACGCACGGTAAGCAGGAGGAGCAG
TCGCCAGTGCCGGCAAAGCAGTATCATCCATATGACGAGAACAGCGATTA
GGGCATGAGGCCAGGAGTCAACATAATCCATAGCCAAAGAGAATGGAACC
AAAAGATTATAGTTTCACTGCTGTACATAATATAAGCTTCTATCTTTCGT
TGCTCCAATGCATGCCACCTCATTTCACTTTCATTTTCTATTCTTTTCAA
AATTTCAAATTGATTGTAATCGTTTTGGATTTGATTTTCGCCTGACTATG
TTTCTCTTTTGATTTTGTAGTTAAGGGCGCCGCTAATGGAGTCTCGAGCA
CGCCGCTGCTCCTCAATGGTCAGTAGGCTTCCGAACTGTCCCTGAATCTC
TTTTGCACACGCATATTACACGGCAAAAGCAAATTATAAGAACACCAATG
ACCTGGCAATGAAATGTACAAAAAAAAAAAAAAAAAAAA

GH11472.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118.a 2745 CG30118.a 55..2336 1..2282 11395 99.9 Plus
CG30118-RA 2500 CG30118-RA 85..2366 1..2282 11395 99.9 Plus
CG30118-RC 2616 CG30118-RC 1049..2050 837..1838 4995 99.9 Plus
CG30118-RC 2616 CG30118-RC 81..917 1..837 4185 100 Plus
CG30118-RC 2616 CG30118-RC 2045..2207 2120..2282 800 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14326832..14327526 694..1 3425 99.9 Minus
chr2R 21145070 chr2R 14317805..14318435 2269..1648 2910 97.8 Minus
chr2R 21145070 chr2R 14318490..14318825 1652..1317 1635 99.1 Minus
chr2R 21145070 chr2R 14318887..14319102 1317..1102 1065 99.5 Minus
chr2R 21145070 chr2R 14319522..14319664 1104..962 700 99.3 Minus
chr2R 21145070 chr2R 14319725..14319854 966..837 650 100 Minus
chr2R 21145070 chr2R 14325305..14325375 763..693 355 100 Minus
chr2R 21145070 chr2R 14324674..14324713 837..798 200 100 Minus
chr2R 21145070 chr2R 14325039..14325078 799..760 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18439734..18440427 694..1 3470 100 Minus
2R 25286936 2R 18430724..18431358 2282..1648 3160 99.8 Minus
2R 25286936 2R 18431412..18431747 1652..1317 1665 99.7 Minus
2R 25286936 2R 18431809..18432024 1317..1102 1080 100 Minus
2R 25286936 2R 18432444..18432586 1104..962 700 99.3 Minus
2R 25286936 2R 18432647..18432776 966..837 650 100 Minus
2R 25286936 2R 18438206..18438276 763..693 355 100 Minus
2R 25286936 2R 18437575..18437614 837..798 200 100 Minus
2R 25286936 2R 18437940..18437979 799..760 200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18440933..18441626 694..1 3470 100 Minus
2R 25260384 2R 18431923..18432557 2282..1648 3160 99.8 Minus
2R 25260384 2R 18432611..18432946 1652..1317 1665 99.7 Minus
2R 25260384 2R 18433008..18433223 1317..1102 1080 100 Minus
2R 25260384 2R 18433643..18433785 1104..962 700 99.3 Minus
2R 25260384 2R 18433846..18433975 966..837 650 100 Minus
2R 25260384 2R 18439405..18439475 763..693 355 100 Minus
2R 25260384 2R 18439139..18439178 799..760 200 100 Minus
2R 25260384 2R 18438774..18438813 837..798 200 100 Minus
Blast to na_te.dros performed 2019-03-16 09:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1035..1146 462..574 138 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6819 464..574 137 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6703..6858 421..574 136 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6807 488..574 135 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2862 480..582 134 64.1 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 131..198 2090..2023 133 66.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2363 494..575 132 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2460 488..613 127 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6877 515..609 126 64.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 642..737 575..474 119 65.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2825 514..575 118 67.7 Plus

GH11472.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:27:05 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14317805..14318434 1649..2269 97 <- Minus
chr2R 14318494..14318824 1318..1648 99 <- Minus
chr2R 14318887..14319100 1104..1317 99 <- Minus
chr2R 14319523..14319659 967..1103 100 <- Minus
chr2R 14319725..14319853 838..966 100 <- Minus
chr2R 14324674..14324711 800..837 100 <- Minus
chr2R 14325039..14325076 762..799 100 <- Minus
chr2R 14325307..14325374 694..761 100 <- Minus
chr2R 14326833..14326950 576..693 100 == Minus
chr2R 14327039..14327526 1..487 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:34 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 1..1428 474..1901 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:58 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 1..1428 474..1901 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:38:29 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 1..1428 474..1901 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:53 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 1..1428 474..1901 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:52 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 1..1428 474..1901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:15 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 55..2323 1..2269 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:58 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 55..2323 1..2269 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:38:29 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 49..2317 1..2269 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:53 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 55..2323 1..2269 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:52 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 49..2317 1..2269 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:05 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18431809..18432022 1104..1317 100 <- Minus
2R 18432445..18432581 967..1103 100 <- Minus
2R 18432647..18432775 838..966 100 <- Minus
2R 18437575..18437612 800..837 100 <- Minus
2R 18430737..18431357 1649..2269 100 <- Minus
2R 18431416..18431746 1318..1648 100 <- Minus
2R 18437940..18437977 762..799 100 <- Minus
2R 18438208..18438275 694..761 100 <- Minus
2R 18439735..18440427 1..693 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:05 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18431809..18432022 1104..1317 100 <- Minus
2R 18432445..18432581 967..1103 100 <- Minus
2R 18432647..18432775 838..966 100 <- Minus
2R 18437575..18437612 800..837 100 <- Minus
2R 18430737..18431357 1649..2269 100 <- Minus
2R 18431416..18431746 1318..1648 100 <- Minus
2R 18437940..18437977 762..799 100 <- Minus
2R 18438208..18438275 694..761 100 <- Minus
2R 18439735..18440427 1..693 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:05 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18431809..18432022 1104..1317 100 <- Minus
2R 18432445..18432581 967..1103 100 <- Minus
2R 18432647..18432775 838..966 100 <- Minus
2R 18437575..18437612 800..837 100 <- Minus
2R 18430737..18431357 1649..2269 100 <- Minus
2R 18431416..18431746 1318..1648 100 <- Minus
2R 18437940..18437977 762..799 100 <- Minus
2R 18438208..18438275 694..761 100 <- Minus
2R 18439735..18440427 1..693 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:38:29 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14318242..14318862 1649..2269 100 <- Minus
arm_2R 14318921..14319251 1318..1648 100 <- Minus
arm_2R 14319314..14319527 1104..1317 100 <- Minus
arm_2R 14319950..14320086 967..1103 100 <- Minus
arm_2R 14320152..14320280 838..966 100 <- Minus
arm_2R 14325080..14325117 800..837 100 <- Minus
arm_2R 14325445..14325482 762..799 100 <- Minus
arm_2R 14325713..14325780 694..761 100 <- Minus
arm_2R 14327240..14327932 1..693 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:49 Download gff for GH11472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18431936..18432556 1649..2269 100 <- Minus
2R 18432615..18432945 1318..1648 100 <- Minus
2R 18433008..18433221 1104..1317 100 <- Minus
2R 18433644..18433780 967..1103 100 <- Minus
2R 18433846..18433974 838..966 100 <- Minus
2R 18438774..18438811 800..837 100 <- Minus
2R 18439139..18439176 762..799 100 <- Minus
2R 18439407..18439474 694..761 100 <- Minus
2R 18440934..18441626 1..693 100   Minus

GH11472.pep Sequence

Translation from 473 to 1900

> GH11472.pep
MATLLSNGQQSVMASTSNGQEQQRHQDEPEQQQQVEIRKSSSPKPGAMPS
LKLNRMGSVSPKDKRVYKIVLTGGPCGGKTTGQSRLCTFFENLGWKVFRV
PETATVLLSGGVKFSDLTEKEAYKFQENLIRTMVQIENTYFELGNSSNRN
CLIICDRGVMDASAYISKDKWEKMMAGNNWNPVEMRDNRYNQILHLVSAA
NGAEDFYSTEDHACRSEGVDLARELDYKSAAAWVGHPYFDVIDNSTNFET
KMNRMIESVCQKLGIDIGDRLQATSRKLKYLVALLPPDSEFPPFQDFDVV
HHYLQSAGPKVQARLRKRGQKNHWSYIHTQRRPNVHGQARIEVKTQLTHR
DYMNLLAQRDDAHFTIYKKRRCFLINNQYFQLDIYKEPGHPRCKGLVLLE
TYSSLTGDALKNCMPKFLNIVKEVTGDPDYSMFNLSLKEDWSTTKKFCRS
ATHGKQEEQSPVPAKQYHPYDENSD*

GH11472.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12764-PA 525 GF12764-PA 14..506 5..458 2258 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20971-PA 522 GG20971-PA 1..522 1..475 2479 89.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20216-PA 546 GH20216-PA 12..546 6..475 2155 77.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ttd14-PA 475 CG30118-PA 1..475 1..475 2532 100 Plus
Ttd14-PB 471 CG30118-PB 1..455 1..455 2411 99.8 Plus
Ttd14-PC 515 CG30118-PC 1..499 1..455 2356 91 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19386-PA 543 GI19386-PA 1..543 1..475 1934 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16702-PA 519 GL16702-PA 14..519 1..475 2096 77.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15662-PB 495 GA15662-PB 14..495 1..475 2291 88.6 Plus
Dpse\GA15662-PA 539 GA15662-PA 14..539 1..475 2234 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19906-PA 524 GM19906-PA 1..524 1..475 2469 88.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25392-PA 522 GD25392-PA 1..522 1..475 2442 88.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22448-PA 552 GJ22448-PA 17..552 6..475 2052 74.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23228-PA 536 GK23228-PA 41..536 28..475 2208 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13911-PA 527 GE13911-PA 1..527 1..475 2479 88.4 Plus

GH11472.hyp Sequence

Translation from 473 to 1900

> GH11472.hyp
MATLLSNGQQSVMASTSNGQEQQRHQDEPEQQQQVEIRKSSSPKPGAMPS
LKLNRMGSVSPKDKRVYKIVLTGGPCGGKTTGQSRLCTFFENLGWKVFRV
PETATVLLSGGVKFSDLTEKEAYKFQENLIRTMVQIENTYFELGNSSNRN
CLIICDRGVMDASAYISKDKWEKMMAGNNWNPVEMRDNRYNQILHLVSAA
NGAEDFYSTEDHACRSEGVDLARELDYKSAAAWVGHPYFDVIDNSTNFET
KMNRMIESVCQKLGIDIGDRLQATSRKLKYLVALLPPDSEFPPFQDFDVV
HHYLQSAGPKVQARLRKRGQKNHWSYIHTQRRPNVHGQARIEVKTQLTHR
DYMNLLAQRDDAHFTIYKKRRCFLINNQYFQLDIYKEPGHPRCKGLVLLE
TYSSLTGDALKNCMPKFLNIVKEVTGDPDYSMFNLSLKEDWSTTKKFCRS
ATHGKQEEQSPVPAKQYHPYDENSD*

GH11472.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-PA 475 CG30118-PA 1..475 1..475 2532 100 Plus
CG30118-PB 471 CG30118-PB 1..455 1..455 2411 99.8 Plus
CG30118-PC 515 CG30118-PC 1..499 1..455 2356 91 Plus