Clone GH11578 Report

Search the DGRC for GH11578

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:115
Well:78
Vector:pOT2
Associated Gene/TranscriptCG3306-RA
Protein status:GH11578.pep: gold
Preliminary Size:1111
Sequenced Size:1042

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3306 2001-01-01 Release 2 assignment
CG3306 2003-01-01 Sim4 clustering to Release 3
CG3306 2003-08-02 Blastp of sequenced clone
CG3306 2008-04-29 Release 5.5 accounting
CG3306 2008-08-15 Release 5.9 accounting
CG3306 2008-12-18 5.12 accounting

Clone Sequence Records

GH11578.complete Sequence

1042 bp (1042 high quality bases) assembled on 2003-08-02

GenBank Submission: BT010104

> GH11578.complete
ATTTCAACGAACATTTACTCAACTTTAAAATTGTTATTTTTGGTATACAG
TGTAAATAAGCTTTCTAAAAATCATGGAGCAGAAGACAACAAAATCTTCA
AGCATTACCCAGGTTGATATTCTGTTGACTGGATCCAGATACGTTGGTCC
CAGTGATGAGTTGGGCATGCAGGAGATGGGTGTCTACATTTATCCGGATG
GGACATGCTACACGGGAGAGTTTCTCAACAATCGTTTCCACGGAAAAGGC
ACCATACAAATTCCTGATTCCTTGGGCGTTACCTATCAAGTAACCCATCA
CAATGGCAGACTGGTCTCGATCGATCAGGTTAACTTCAATGATAGTCTGC
CCGTCGACTTTGAGATGAAGGATCATTACACGATGAGTTTCAAACCCTGG
ACGTATTGCACGCCGGAGGATCGCCGATTCTACCAGGAAACCAAGGAGCC
TATGGATGCCGTCGGTCCGAATAAGTTCCAGTCCAAGGACGGACCAAATC
CGCTCAACCTGGGTCGCAATATTTTCGATCTGGGCTTCGGACTGCTGGGC
AATCGTGGCTTCATGTTGGATACAAAGACGTTTAGCAACCAGAGTATATA
TCTAGGATGTCGGGAGGCTCGTCGCTGGATCCGAGAGAACTGTGCCCATG
GACCACTCAGCAAGCGTCACCACAAACAGAAGTTATTGGCCCGTTTTGCC
CGTGAGATCATCCGGAACAATCAGGAGAATGCAGGCTGCAGCCAAAGGGA
GTTCATGACCAAAATCCATCCTTGTAAGCACTCCACCAGCTTGGATAGCT
TCGCTTCGGAGCGTCTCCATCTGGCCAGCACTACGGATTCCACGACGTCG
GAGGCTCAGGCCATGGGTTTGCGTCATGAGGAGTTCCATGGCAATTGGAC
AAGAGCGAAGAGCGAGAGCAGCGTGTGTCGCATCAACTGATTGATCCTTT
GAATTTTTTGTTACTTTCGCTTCTACTTTTCGATGTGGCCTTAAATTAAT
ATATTGTAAATCGTTGGTTGACCCACAAAAAAAAAAAAAAAA

GH11578.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3306-RA 1026 CG3306-RA 1..1026 1..1026 5130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9593385..9594413 1..1026 4990 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9601523..9602549 1..1027 5135 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9594623..9595649 1..1027 5135 100 Plus
Blast to na_te.dros performed 2019-03-15 21:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2496..2585 1016..924 134 62.4 Minus

GH11578.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:45:17 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9593385..9594413 1..1026 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:44 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..867 74..940 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:39 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..867 74..940 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:57:12 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..867 74..940 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:17 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..867 74..940 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:02 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..867 74..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:53:49 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..1026 1..1026 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:39 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..1026 1..1026 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:57:12 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..1026 1..1026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:17 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..1026 1..1026 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:02 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3306-RA 1..1026 1..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:17 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9601523..9602548 1..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:17 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9601523..9602548 1..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:17 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9601523..9602548 1..1026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:57:12 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9594623..9595648 1..1026 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:16 Download gff for GH11578.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9594623..9595648 1..1026 100   Plus

GH11578.hyp Sequence

Translation from 73 to 939

> GH11578.hyp
MEQKTTKSSSITQVDILLTGSRYVGPSDELGMQEMGVYIYPDGTCYTGEF
LNNRFHGKGTIQIPDSLGVTYQVTHHNGRLVSIDQVNFNDSLPVDFEMKD
HYTMSFKPWTYCTPEDRRFYQETKEPMDAVGPNKFQSKDGPNPLNLGRNI
FDLGFGLLGNRGFMLDTKTFSNQSIYLGCREARRWIRENCAHGPLSKRHH
KQKLLARFAREIIRNNQENAGCSQREFMTKIHPCKHSTSLDSFASERLHL
ASTTDSTTSEAQAMGLRHEEFHGNWTRAKSESSVCRIN*

GH11578.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3306-PA 288 CG3306-PA 1..288 1..288 1554 100 Plus
CG3222-PA 379 CG3222-PA 8..210 12..216 245 30.8 Plus

GH11578.pep Sequence

Translation from 73 to 939

> GH11578.pep
MEQKTTKSSSITQVDILLTGSRYVGPSDELGMQEMGVYIYPDGTCYTGEF
LNNRFHGKGTIQIPDSLGVTYQVTHHNGRLVSIDQVNFNDSLPVDFEMKD
HYTMSFKPWTYCTPEDRRFYQETKEPMDAVGPNKFQSKDGPNPLNLGRNI
FDLGFGLLGNRGFMLDTKTFSNQSIYLGCREARRWIRENCAHGPLSKRHH
KQKLLARFAREIIRNNQENAGCSQREFMTKIHPCKHSTSLDSFASERLHL
ASTTDSTTSEAQAMGLRHEEFHGNWTRAKSESSVCRIN*

GH11578.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20102-PA 316 GF20102-PA 5..316 4..288 794 50.2 Plus
Dana\GF25142-PA 392 GF25142-PA 3..190 4..190 210 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15389-PA 288 GG15389-PA 1..288 1..288 1364 86.1 Plus
Dere\GG15388-PA 380 GG15388-PA 5..211 8..216 228 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16306-PA 373 GH16306-PA 13..212 17..218 262 31.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3306-PA 288 CG3306-PA 1..288 1..288 1554 100 Plus
CG3222-PA 379 CG3222-PA 8..210 12..216 245 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13250-PA 299 GI13250-PA 1..299 1..288 531 40.1 Plus
Dmoj\GI13249-PA 376 GI13249-PA 4..221 7..227 243 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10306-PA 393 GL10306-PA 8..215 11..216 233 29.2 Plus
Dper\GL19362-PA 347 GL19362-PA 13..210 17..216 193 29 Plus
Dper\GL10307-PA 140 GL10307-PA 9..140 174..288 161 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17254-PA 313 GA17254-PA 28..313 19..288 631 44.6 Plus
Dpse\GA28670-PA 393 GA28670-PA 8..215 11..216 231 29.2 Plus
Dpse\GA25934-PA 369 GA25934-PA 13..210 17..216 192 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25162-PA 288 GM25162-PA 1..288 1..288 1494 94.8 Plus
Dsec\GM25160-PA 247 GM25160-PA 17..247 58..288 1200 93.9 Plus
Dsec\GM16869-PA 185 GM16869-PA 1..185 104..288 951 93 Plus
Dsec\GM25159-PA 363 GM25159-PA 13..157 17..161 189 32 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14195-PA 288 GD14195-PA 1..288 1..288 1504 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12021-PA 302 GJ12021-PA 5..302 9..288 625 44.5 Plus
Dvir\GJ12020-PA 374 GJ12020-PA 2..229 10..236 236 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16618-PA 308 GK16618-PA 12..308 19..288 578 43.8 Plus
Dwil\GK16617-PA 364 GK16617-PA 2..211 5..216 228 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20854-PA 288 GE20854-PA 1..288 1..288 1353 85.4 Plus
Dyak\GE20853-PA 381 GE20853-PA 10..212 12..216 228 29.4 Plus