Clone GH11618 Report

Search the DGRC for GH11618

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:116
Well:18
Vector:pOT2
Associated Gene/TranscriptCG7149-RA
Protein status:GH11618.pep: gold
Preliminary Size:2405
Sequenced Size:2477

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7149 2001-01-01 Release 2 assignment
CG7149 2001-11-08 Blastp of sequenced clone
CG7149 2003-01-01 Sim4 clustering to Release 3
CG7149 2008-04-29 Release 5.5 accounting
CG7149 2008-08-15 Release 5.9 accounting
CG7149 2008-12-18 5.12 accounting

Clone Sequence Records

GH11618.complete Sequence

2477 bp (2477 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069098

> GH11618.complete
CCGGTCCGTCCGGAATAAAGTACGTGTGTGTTCTCTTCATCTTTTGGGGC
GGTCGTATATACGTCTGCGTGCTCGTCTCTTCGTCCGGTTCTTCTTCTTC
GCCAGTTGTACGAGTGCAGTAGGAGTAACTGTTGTTTGCGTGTTGCGTGT
TCTGGAGAGCGGCGGACAAACCGATTATTTAATTTAGCCAACCGCATTCC
GCTTCTCGCGAGCCTCCCGCGTGTGAACGAATCCGTAAATCGCCTACATA
TCTGTGTAGATCCGCAGATGTTATACAATATGCCGAACTAGCCAACTGAC
CCGTAGCAAAGGTCAAGCCGATACGCGCTAATCACACTTCCGATCCAAGT
GCAAACTCCCCCAGTCGCCGCTTTGCCGCTCCCGCTGTTATCACTTGCCG
CCGCCACCCACTTGGTGGTACAGCAAAAACATATTAGAATAGTTGAAAAA
TTGAAATTACAAAATGGGTTGCATGCGCTACTTGTCGGAGGCTCATTTGA
GGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTCAGC
GTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCCCAA
ATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTGTCG
TCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCCAAT
TCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGCCAT
AAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGGCTC
GAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGATTG
GACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATTCGG
CACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACGTAT
TTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTTATG
TTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCATGCT
GTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATATATG
GTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGCATG
GTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAAAAA
CAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTTTCG
CCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCGCGA
AACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGGCAC
GATATTTTCAAATATTGCATGCCGACTGATAGTGGCCCAAATGTCGGACA
CGCGTTGCGATGCCTTCAATGTGCTCATGTGGCCACTGGCCGCCACAGTA
GGAGTCTGCTGTTTTCCCTACTACCAGCAGGTCTTCGACTCAGATCTGAC
ATCGGACACCGAACGATGGATACTCTATGGTCTAACCATTTTCTCAACTT
TAGCTCACTGGCACTACGGCTACGGCGTGGTTTCTGAGATGTGCGACCAC
TTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGGTTC
AGATATAACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGTTGA
AAAGCCATTGAAACTAAATCGCTCACTAACAAAAATCACATCAAAAACCG
GGGACAACCAAAATCAACCATCTTGTGATATATAGTATATATACATATAT
ATATAAATGGGTTCCAAACATTTAGCCCTCGCCTAATGTCTAGGTTCTAA
GTGGTCCATACTCAAATCAAAACACTAAACCGATACTCGCCATACGCGGT
TTCTAATGTGGTAAAGTCCATACGAAGATATTATGTTATCCAAATCCTAA
TCATAGTCTAAGAACTTATTATATAGTACGATAAACCTAGGCTAAATGCA
TGAAAGAATTATCGTCGGATACGTTTTTAACCAGCATGTTGATATACATA
TACATAGCAGCGCTGCTAACTGCATGATCCGATAAGTATTATGTGCCTGA
AGACAGCTACTGAATGAAGTTGTTAACCTATGATAATGCAAAGGCTATGT
TCACTGTACCGCCCATCGTATTGTAATTTTCTGTAGATCACGAAACAGAC
TGTCGCCGCTGAGGAAGAGCTGCAGGATGTTGTTGAGGACGCCAAACCTA
CGGAAAACGTCGAAGAAGTCTAGCTATGGCCGCTTCTTTTGCAATTGTGT
TGTGTTTAAACTTTAAATCGTTACCTAGTTTAGTTAAGACAAATTGAAAG
TGTGTTTAGGCTTAAGCTCGAAATTGAAACGAAAATATAATTGTTAAAAA
GAAAGTTCAATAAATTAATACTTGATCGATCTCAGATCGTATTTGCTAGG
TAAAAAAAAAAAAAAAAAAAAAAAAAA

GH11618.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RA 2613 CG7149-RA 152..2604 1..2453 12265 100 Plus
CG7149.a 2465 CG7149.a 17..2464 1..2453 12165 99.7 Plus
CG7149.c 2337 CG7149.c 152..2061 1..1910 9550 100 Plus
CG7149.c 2337 CG7149.c 2061..2328 2186..2453 1340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7785244..7786116 2451..1579 4365 100 Minus
chr2L 23010047 chr2L 7789106..7789625 520..1 2600 100 Minus
chr2L 23010047 chr2L 7786917..7787175 1034..776 1295 100 Minus
chr2L 23010047 chr2L 7786177..7786388 1581..1370 1060 100 Minus
chr2L 23010047 chr2L 7787235..7787423 776..588 945 100 Minus
chr2L 23010047 chr2L 7786456..7786636 1369..1189 905 100 Minus
chr2L 23010047 chr2L 7786697..7786852 1188..1033 780 100 Minus
chr2L 23010047 chr2L 7787483..7787553 589..519 355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7786158..7787032 2453..1579 4375 100 Minus
2L 23513712 2L 7790022..7790541 520..1 2600 100 Minus
2L 23513712 2L 7787833..7788091 1034..776 1295 100 Minus
2L 23513712 2L 7787093..7787304 1581..1370 1060 100 Minus
2L 23513712 2L 7788151..7788339 776..588 945 100 Minus
2L 23513712 2L 7787372..7787552 1369..1189 905 100 Minus
2L 23513712 2L 7787613..7787768 1188..1033 780 100 Minus
2L 23513712 2L 7788399..7788469 589..519 355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7786158..7787032 2453..1579 4375 100 Minus
2L 23513712 2L 7790022..7790541 520..1 2600 100 Minus
2L 23513712 2L 7787833..7788091 1034..776 1295 100 Minus
2L 23513712 2L 7787093..7787304 1581..1370 1060 100 Minus
2L 23513712 2L 7788151..7788339 776..588 945 100 Minus
2L 23513712 2L 7787372..7787552 1369..1189 905 100 Minus
2L 23513712 2L 7787613..7787768 1188..1033 780 100 Minus
2L 23513712 2L 7788399..7788469 589..519 355 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:48:05 has no hits.

GH11618.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:48:52 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7785244..7786115 1580..2451 96 <- Minus
chr2L 7786179..7786388 1370..1579 100 <- Minus
chr2L 7786456..7786636 1189..1369 100 <- Minus
chr2L 7786697..7786851 1034..1188 100 <- Minus
chr2L 7786918..7787174 777..1033 100 <- Minus
chr2L 7787235..7787421 590..776 100 <- Minus
chr2L 7787483..7787551 521..589 100 <- Minus
chr2L 7789106..7789625 1..520 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:51 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 1..1248 464..1711 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:56 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 1..1248 464..1711 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:58:33 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 1..1248 464..1711 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:30 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 1..1248 464..1711 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:04 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 1..1248 464..1711 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:41 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 17..2467 1..2451 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:56 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 17..2467 1..2451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:58:33 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 17..2467 1..2451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:30 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 17..2467 1..2451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:04 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 17..2467 1..2451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:52 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7786160..7787031 1580..2451 100 <- Minus
2L 7787095..7787304 1370..1579 100 <- Minus
2L 7787372..7787552 1189..1369 100 <- Minus
2L 7787613..7787767 1034..1188 100 <- Minus
2L 7787834..7788090 777..1033 100 <- Minus
2L 7788151..7788337 590..776 100 <- Minus
2L 7788399..7788467 521..589 100 <- Minus
2L 7790022..7790541 1..520 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:52 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7786160..7787031 1580..2451 100 <- Minus
2L 7787095..7787304 1370..1579 100 <- Minus
2L 7787372..7787552 1189..1369 100 <- Minus
2L 7787613..7787767 1034..1188 100 <- Minus
2L 7787834..7788090 777..1033 100 <- Minus
2L 7788151..7788337 590..776 100 <- Minus
2L 7788399..7788467 521..589 100 <- Minus
2L 7790022..7790541 1..520 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:52 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7786160..7787031 1580..2451 100 <- Minus
2L 7787095..7787304 1370..1579 100 <- Minus
2L 7787372..7787552 1189..1369 100 <- Minus
2L 7787613..7787767 1034..1188 100 <- Minus
2L 7787834..7788090 777..1033 100 <- Minus
2L 7788151..7788337 590..776 100 <- Minus
2L 7788399..7788467 521..589 100 <- Minus
2L 7790022..7790541 1..520 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:58:33 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7787834..7788090 777..1033 100 <- Minus
arm_2L 7788151..7788337 590..776 100 <- Minus
arm_2L 7788399..7788467 521..589 100 <- Minus
arm_2L 7786160..7787031 1580..2451 100 <- Minus
arm_2L 7787095..7787304 1370..1579 100 <- Minus
arm_2L 7787372..7787552 1189..1369 100 <- Minus
arm_2L 7787613..7787767 1034..1188 100 <- Minus
arm_2L 7790022..7790541 1..520 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:32 Download gff for GH11618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7787613..7787767 1034..1188 100 <- Minus
2L 7787834..7788090 777..1033 100 <- Minus
2L 7788151..7788337 590..776 100 <- Minus
2L 7788399..7788467 521..589 100 <- Minus
2L 7786160..7787031 1580..2451 100 <- Minus
2L 7787095..7787304 1370..1579 100 <- Minus
2L 7787372..7787552 1189..1369 100 <- Minus
2L 7790022..7790541 1..520 100   Minus

GH11618.pep Sequence

Translation from 463 to 1710

> GH11618.pep
MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAP
NVLTFVGFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILI
YYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGTHDL
PPIRMFFVIWNVFLNFYLTHVEKYNTGVMFLPWGYDFTMWGVSGMLFVAT
VFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGK
MRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTE
RWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQ
PLLQNNNKIKPLKSH*

GH11618.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22846-PA 416 GF22846-PA 1..410 1..411 1925 86.4 Plus
Dana\GF14245-PA 426 GF14245-PA 12..414 5..410 1018 47.8 Plus
Dana\GF11181-PA 506 GF11181-PA 10..206 7..211 295 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23508-PA 415 GG23508-PA 1..415 1..415 2208 98.8 Plus
Dere\GG21192-PA 540 GG21192-PA 12..317 5..302 828 50.2 Plus
Dere\GG22487-PA 464 GG22487-PA 12..419 7..387 318 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11383-PA 414 GH11383-PA 1..401 1..400 1808 83.5 Plus
Dgri\GH13420-PA 419 GH13420-PA 11..416 5..415 974 46.4 Plus
Dgri\GH22625-PA 455 GH22625-PA 12..428 7..396 295 24.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PC 415 CG7149-PC 1..415 1..415 2266 100 Plus
CG7149-PA 415 CG7149-PA 1..415 1..415 2266 100 Plus
CG7149-PB 414 CG7149-PB 1..391 1..391 2129 99 Plus
CG33116-PA 427 CG33116-PA 12..397 5..393 1012 48.1 Plus
bbc-PC 417 CG6016-PC 12..375 7..387 338 26.9 Plus
bbc-PA 417 CG6016-PA 12..375 7..387 334 27.4 Plus
bbc-PB 417 CG6016-PB 12..375 7..387 325 27.1 Plus
bbc-PE 373 CG6016-PE 12..331 7..387 303 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18087-PA 371 GI18087-PA 1..357 1..400 1562 73.8 Plus
Dmoj\GI17657-PA 423 GI17657-PA 11..396 5..393 990 48.5 Plus
Dmoj\GI21334-PA 443 GI21334-PA 10..417 5..397 318 25.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18851-PA 421 GL18851-PA 1..414 1..415 1907 84.7 Plus
Dper\GL26085-PA 539 GL26085-PA 12..332 5..317 814 47.5 Plus
Dper\GL17070-PA 505 GL17070-PA 12..208 7..211 298 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20139-PA 421 GA20139-PA 1..414 1..415 1903 84.4 Plus
Dpse\GA17295-PA 424 GA17295-PA 12..393 5..389 943 48 Plus
Dpse\GA19298-PA 461 GA19298-PA 12..419 7..387 317 25.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13330-PA 415 GM13330-PA 1..415 1..415 2193 98.3 Plus
Dsec\GM17361-PA 393 GM17361-PA 12..376 5..406 824 43.4 Plus
Dsec\GM20274-PA 505 GM20274-PA 12..208 7..211 299 36.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22469-PA 414 GD22469-PA 1..413 1..414 2074 92.8 Plus
Dsim\GD24219-PA 558 GD24219-PA 12..317 5..302 828 50.2 Plus
Dsim\GD25756-PA 505 GD25756-PA 12..208 7..211 299 36.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16783-PA 415 GJ16783-PA 1..401 1..400 1817 83.5 Plus
Dvir\GJ18224-PA 420 GJ18224-PA 12..411 5..407 971 45.9 Plus
Dvir\GJ19680-PA 455 GJ19680-PA 10..419 5..387 313 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15304-PA 419 GK15304-PA 1..408 4..410 1820 82.4 Plus
Dwil\GK24378-PA 420 GK24378-PA 12..420 5..415 974 45.8 Plus
Dwil\GK10662-PA 462 GK10662-PA 9..428 4..396 303 25.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18335-PA 414 GE18335-PA 1..413 1..414 2065 92 Plus
Dyak\GE13266-PA 558 GE13266-PA 12..319 5..304 835 50.2 Plus
Dyak\GE13358-PA 508 GE13358-PA 12..208 7..211 299 36.4 Plus

GH11618.hyp Sequence

Translation from 463 to 1710

> GH11618.hyp
MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAP
NVLTFVGFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILI
YYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGTHDL
PPIRMFFVIWNVFLNFYLTHVEKYNTGVMFLPWGYDFTMWGVSGMLFVAT
VFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGK
MRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTE
RWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQ
PLLQNNNKIKPLKSH*

GH11618.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PC 415 CG7149-PC 1..415 1..415 2266 100 Plus
CG7149-PA 415 CG7149-PA 1..415 1..415 2266 100 Plus
CG7149-PB 414 CG7149-PB 1..391 1..391 2129 99 Plus
CG33116-PA 427 CG33116-PA 12..397 5..393 1012 48.1 Plus
bbc-PC 417 CG6016-PC 12..375 7..387 338 26.9 Plus