Clone GH11627 Report

Search the DGRC for GH11627

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:116
Well:27
Vector:pOT2
Associated Gene/TranscriptCG16959-RA
Protein status:GH11627.pep: gold
Preliminary Size:2254
Sequenced Size:2290

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16959 2001-01-01 Release 2 assignment
CG16959 2001-07-04 Blastp of sequenced clone
CG16959 2003-01-01 Sim4 clustering to Release 3
CG16959 2008-04-29 Release 5.5 accounting
CG16959 2008-08-15 Release 5.9 accounting
CG16959 2008-12-18 5.12 accounting

Clone Sequence Records

GH11627.complete Sequence

2290 bp (2290 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051448

> GH11627.complete
CCCAAGCGAACGGACGCCGCGATCGCTTGGTTGCATCGGTTGGTCAGTTC
ATTTTGGTCGATTCAGTTCTGTCCCCTAGGGAACCAACCGTCTCAATCGA
AAAAGTGTAGCGAATATCTGTGTTTTTGTTATTGTGCGTGATTGCTGAAA
CCAAATCAAAACAAATTGAGCCCTCTACCAACCAGTTTGCACATTAAACC
ACCAACCGAGTTGCAAAAGATAAACAGAAAATACACATAACAAACCAACT
AATATTTAAATAAATACGCTTAGACGCGTTGAACAAAGAAAATCCAGTTA
GTGTGTGCACAGAAGATGAAAGTATTCAAACAAATGCCAAGAATATTTAA
CAACATAATGGGATAAATCATAAACACACTATAAATTGAACAAGGGAACC
AGATCAGCGAATGCAAAAGATTCACCATGAGGCGTCGCAAAGTGCTCATC
TGCTGGGCTGCTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCT
CCTACTGACCACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGC
CGCCTCCGTGGAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGT
GGCTGGCAGCTGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTT
CACCCTCGGCTATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAG
TGAGTGCCAAGCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCG
GGAACTGCACTCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGA
ACGGGGACCCTGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGG
TCAAGAGAACCGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTG
CATTGCCCGGAGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGC
GAGGCATGCAAAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACG
AGGAGGGACTGGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCG
TTCTACTATCCGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACC
CTGCTCGACGCCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCC
AGCGGCACTTGCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTG
GACACTCCTGGCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGA
GGTCCAGGAGACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGT
GCCAGTGCAAGGAGGGCTATGTGCCCTGGAGCGATGGCATCTGCTATCGC
CTGTACACAAGGGGTCCCTGTGGACCCAATGAGTTCCTGGTCAACGGAAC
CAGCTGTGTGCGCAACTTCTGTGGCAAGAATCGCCTGTACTTCCCAGCGG
AAGATTCTTGCTACAGGATTGGATCTCAAGGCCCGTGTGCCCTACATCAG
GTGGTGATCTTCGACTTCACCGCCAGGCCATCCATCGATGGCATCTCCTA
CAATGGAATGTGCGGTTGTTCCGGTGTCCTCACCAATCTGGATCAGCAGT
GCACGGGAGATGGAGCGGATAAGGAACAGAATATATGCGAGTCCACGCCC
GGAATGGTGGAGATCAATGGGCAGTGCCACAAGCTGTATAGCCGAGGACC
CTGCGGCGCGGGTCAGTGGCTAGAGCCACTGAAATCGCAAACCACGAATG
GCACCTCAATTTTGGTCCACGCCAGTCGGGCCAAGTGCGTCTGCCGACCG
GGTTATACGCCCTCGGAGTCGGATCAACGCGGCATGAGCAACTGCAGCGC
TCCAAGTGTCAGCCTGGCGAGGTATTTAACCAACGAGCGACTCAACTCGA
AGTTTCTCAATGATCTGCACCTTGGTGGGACCACCTAAAATCCCCAATCT
TCAAGCTATTTTCTGTCCGGTTGTGATGACTTTTATTCTTCTTTCACCGC
ATGCCCACCTAATTTACCCTATATTACCTCCATTACCCTTTGTTTTTGTG
TTTGCATGCTCAGTGTTTATTGATCGATGCGATCATTTGTTATTCAATTA
ACCATTTTGTTCTCTTTTAGGTGGTTTTTAGAAATATTCGGTTAACGTGT
TCGATAGGATGAGACAGTGCCATTAATGTATTACATCGACTAATGTACGA
GTTGTATTTAAGGAAAATCACGATAAGGGAAATAAAAGAATTTGAAAGAC
TAACAATATAGAGTCTAGAAATGAAAAAAAAAAAAAAAAA

GH11627.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RA 2297 CG16959-RA 17..2292 1..2276 11380 100 Plus
CG16959-RB 2146 CG16959-RB 277..2141 412..2276 9325 100 Plus
CG16959.a 1682 CG16959.a 65..1523 415..1873 7295 100 Plus
CG16959-RB 2146 CG16959-RB 66..286 1..221 1105 100 Plus
CG16959.a 1682 CG16959.a 1520..1677 2119..2276 790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15109957..15111029 2273..1201 5305 99.6 Minus
chr3L 24539361 chr3L 15112675..15113114 857..418 2125 98.9 Minus
chr3L 24539361 chr3L 15111140..15111485 1201..856 1730 100 Minus
chr3L 24539361 chr3L 15115135..15115353 219..1 1095 100 Minus
chr3L 24539361 chr3L 15114176..15114377 419..218 965 98.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15119875..15120950 2276..1201 5380 100 Minus
3L 28110227 3L 15122624..15123063 857..418 2200 100 Minus
3L 28110227 3L 15121064..15121409 1201..856 1730 100 Minus
3L 28110227 3L 15125084..15125302 219..1 1095 100 Minus
3L 28110227 3L 15124125..15124326 419..218 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15112975..15114050 2276..1201 5380 100 Minus
3L 28103327 3L 15115724..15116163 857..418 2200 100 Minus
3L 28103327 3L 15114164..15114509 1201..856 1730 100 Minus
3L 28103327 3L 15118184..15118402 219..1 1095 100 Minus
3L 28103327 3L 15117225..15117426 419..218 1010 100 Minus
Blast to na_te.dros performed 2019-03-15 15:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 116..187 216..290 114 68.4 Plus

GH11627.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:52:31 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15109957..15111028 1202..2273 99 <- Minus
chr3L 15111140..15111483 858..1201 100 <- Minus
chr3L 15112675..15113112 420..857 98 <- Minus
chr3L 15114176..15114375 220..419 98 <- Minus
chr3L 15115135..15115353 1..219 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:35:52 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 1..1512 427..1938 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:19 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 1..1512 427..1938 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:44:08 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 1..1512 427..1938 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:34 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 1..1512 427..1938 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:11 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 1..1512 427..1938 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:45 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 17..2289 1..2273 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:18 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 17..2289 1..2273 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:08 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 20..2292 1..2273 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:34 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 17..2289 1..2273 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:11 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 20..2292 1..2273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:31 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15124125..15124324 220..419 100 <- Minus
3L 15122624..15123061 420..857 100 <- Minus
3L 15119878..15120949 1202..2273 100 <- Minus
3L 15121064..15121407 858..1201 100 <- Minus
3L 15125084..15125302 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:31 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15124125..15124324 220..419 100 <- Minus
3L 15122624..15123061 420..857 100 <- Minus
3L 15119878..15120949 1202..2273 100 <- Minus
3L 15121064..15121407 858..1201 100 <- Minus
3L 15125084..15125302 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:31 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15124125..15124324 220..419 100 <- Minus
3L 15122624..15123061 420..857 100 <- Minus
3L 15119878..15120949 1202..2273 100 <- Minus
3L 15121064..15121407 858..1201 100 <- Minus
3L 15125084..15125302 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:08 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15112978..15114049 1202..2273 100 <- Minus
arm_3L 15114164..15114507 858..1201 100 <- Minus
arm_3L 15115724..15116161 420..857 100 <- Minus
arm_3L 15117225..15117424 220..419 100 <- Minus
arm_3L 15118184..15118402 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:24 Download gff for GH11627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15112978..15114049 1202..2273 100 <- Minus
3L 15114164..15114507 858..1201 100 <- Minus
3L 15115724..15116161 420..857 100 <- Minus
3L 15117225..15117424 220..419 100 <- Minus
3L 15118184..15118402 1..219 100   Minus

GH11627.pep Sequence

Translation from 426 to 1937

> GH11627.pep
MRRRKVLICWAALQAGSSILTCLLLLLTTGQNPQQVAAGIVPPPWSDPAQ
NPCASMSGGWQLLYWAPLKKCFKIFTLGYPCPATMELSPTAVSAKRKDAP
AAECRCPPGTALSPLHDNVCYKLYERGPCQPEEYFQPVPDQVKRTATGNR
WGTCKRPLHCPEDMLFWPRDNKCYARHAKGPCSRGKLLVRNEEGLAECRC
EDVGDLASFYYPAEESCYEHYTKGPCSTPGHIFLPGGRCDCQRHLPHYHA
PHQMCYELDTPGPCPPGHIFRIPDEVQETTGSTLQLLPRAQCQCKEGYVP
WSDGICYRLYTRGPCGPNEFLVNGTSCVRNFCGKNRLYFPAEDSCYRIGS
QGPCALHQVVIFDFTARPSIDGISYNGMCGCSGVLTNLDQQCTGDGADKE
QNICESTPGMVEINGQCHKLYSRGPCGAGQWLEPLKSQTTNGTSILVHAS
RAKCVCRPGYTPSESDQRGMSNCSAPSVSLARYLTNERLNSKFLNDLHLG
GTT*

GH11627.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10742-PA 501 GF10742-PA 1..501 1..503 2354 88.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13684-PA 501 GG13684-PA 1..501 1..503 2598 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16668-PA 502 GH16668-PA 1..491 1..496 2001 76 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PB 503 CG16959-PB 1..503 1..503 2845 100 Plus
CG16959-PA 503 CG16959-PA 1..503 1..503 2845 100 Plus
CG16959-PE 489 CG16959-PE 1..483 1..483 2736 99.8 Plus
CG16959-PD 489 CG16959-PD 1..483 1..483 2736 99.8 Plus
CG16959-PC 489 CG16959-PC 1..483 1..483 2736 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11354-PA 511 GI11354-PA 3..490 1..496 2048 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25812-PA 501 GL25812-PA 1..434 1..428 1932 83.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14237-PA 511 GA14237-PA 1..506 1..500 2234 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24504-PA 498 GM24504-PA 1..498 1..503 2552 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12576-PA 589 GD12576-PA 1..453 1..453 2356 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11608-PA 492 GJ11608-PA 11..489 2..486 2006 77.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20494-PA 506 GK20494-PA 1..501 1..484 2047 78.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19980-PA 502 GE19980-PA 1..501 1..503 2604 96.4 Plus

GH11627.hyp Sequence

Translation from 426 to 1937

> GH11627.hyp
MRRRKVLICWAALQAGSSILTCLLLLLTTGQNPQQVAAGIVPPPWSDPAQ
NPCASMSGGWQLLYWAPLKKCFKIFTLGYPCPATMELSPTAVSAKRKDAP
AAECRCPPGTALSPLHDNVCYKLYERGPCQPEEYFQPVPDQVKRTATGNR
WGTCKRPLHCPEDMLFWPRDNKCYARHAKGPCSRGKLLVRNEEGLAECRC
EDVGDLASFYYPAEESCYEHYTKGPCSTPGHIFLPGGRCDCQRHLPHYHA
PHQMCYELDTPGPCPPGHIFRIPDEVQETTGSTLQLLPRAQCQCKEGYVP
WSDGICYRLYTRGPCGPNEFLVNGTSCVRNFCGKNRLYFPAEDSCYRIGS
QGPCALHQVVIFDFTARPSIDGISYNGMCGCSGVLTNLDQQCTGDGADKE
QNICESTPGMVEINGQCHKLYSRGPCGAGQWLEPLKSQTTNGTSILVHAS
RAKCVCRPGYTPSESDQRGMSNCSAPSVSLARYLTNERLNSKFLNDLHLG
GTT*

GH11627.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PB 503 CG16959-PB 1..503 1..503 2845 100 Plus
CG16959-PA 503 CG16959-PA 1..503 1..503 2845 100 Plus
CG16959-PE 489 CG16959-PE 1..483 1..483 2736 99.8 Plus
CG16959-PD 489 CG16959-PD 1..483 1..483 2736 99.8 Plus
CG16959-PC 489 CG16959-PC 1..483 1..483 2736 99.8 Plus