Clone GH11688 Report

Search the DGRC for GH11688

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:116
Well:88
Vector:pOT2
Associated Gene/TranscriptCG42740-RA
Protein status:GH11688.pep2: gold GH11688.pep: gold
Preliminary Size:4018
Sequenced Size:4036

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2217 2000-02-14 Blastp of sequenced clone
CG2216 2001-01-01 Release 2 assignment
CG2217 2001-01-01 Release 2 assignment
CG2217 2003-01-01 Sim4 clustering to Release 3
CG2217 2008-04-29 Release 5.5 accounting
CG2217 2008-08-15 Release 5.9 accounting
CG2217 2008-12-18 5.12 accounting

Clone Sequence Records

GH11688.complete Sequence

4036 bp (4036 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145669.1

> GH11688.complete
CCGGGTGATGGACAGGGGGAACTACGCGTACCATTCGGAGCTACAGTGCC
CGATGGACGTGCCGTAACTGTCTGTACACCCGGAAGTGCGACTACACTCT
CCCCGTGAGGGCGGCCGGAAACAGGTCCTTCGGCAAGGTCATGTCTCTGC
CGAAGGCTCCTGGCGAATGGTAGTCGGGCGAAGAGAAGACAACTCTGGAA
GATTACCCCAATCCAAGACGGAACAGACAGCGTCGAGGGATGTGTGGCCG
AGGGGGAACTCGGTCTCTAGCTGGCGGACTCTGCGCACCTGTCCACCCGC
AGTTTCAACTCGGACTTCTTGCGGCACCTCGGGCTCTGCCGTGGGCGACC
TCCTTTCCCGTGCACTCGTGGGAACCAAATGAATAGTTTAGAAGTAAATG
AGTCTGATGCTGCTCCAGAAGCATCACCCAACCGAAATCCTTCAGTGGAT
TCGGGTCCTGGCTTTGTCAGGCTGAAAACCAGGCAAAAGAAGCTGCTGCG
AAAGGCTCTTCATGGAGGGCTGACCAGAGAAAAGGCTCTGGAGGTGGTGC
AAGCTCTTCCCATAGTCAAGGGACTCCTACCCGATCCTTATGAAAACCAA
ACCGCCAATCCGTACCCCTCGGGTTTAGTTGAGTGCGTGAGAATCGGCTT
AGCTGCGGAGTCTGCTGGGACTTCCCTGACCAGCGAGCAAATGACCATGA
TCAAGGAGGCCATTATCGACGTCACCGTGGAGAAATCTGGCAGTCAGAAG
CCCCAGTTCGAGGGATGTGTGGCTCGAAGAGGATGGCTCCTTGTGACTTG
TTCCAACTCCTCCACCTCAGAATGGTTCAAACAAAATTTTTGCCACATCC
AGTCGAAAGTAACCACTAAGCTGAAGCTAATGGATGAGTCTGAACTGCCA
AGGAGGAATGTCGTTCTCGGATATTTTCCAGATAGTCTAACCACCAGCAG
CCAGAAGGTCTTGGAAATCATTCAGGCCCAGAACCCAGTCTCAACGGCGG
AATGGAGGGTTATGAACAGGTTGACCCACGGTGAGCTACTGCATCTTTCC
ATGGCAGTTGACAATGAATCGCACAAGAAACTGATCGAACTGAATGGAAC
GATATCCTTTCGATTCGGGCGTGTAAAACTTTGTTTGAAAAACTCCCTCG
ATAGGAAATCCGTACTAAATGGTAGAAAAGAAACGTCACCAAATAGAAAA
TCCCTGGACAAGGCTGCTGTAAGTCGGGAAATTGTGCCTGCTCCGCAGGA
ACCAGTGATCACAAATGATAGTCCGTGGAACCAATCCCATAATCCTTGGC
TCAGTCATAGTAATCCTATGATGCAGTGGAATCAACAACAGATGCTCAGG
TATGATCCTTATAGTCCAAGGGAACTTCCGCCGAACTTTTTGCATGCCAG
CTATTCGGGATTGGGCTATGGGAATGAAGGAGACAGGAGGCTGAGACCAC
GAACTTGGCCAGGAAACTGCTGATGAGAAAAGGGTTCCAATACCAGAGGA
AGATATATCAATTGACGAAACATCAAACTTAAGGAATTACAGCGACTTGT
CCTTCATTTTCAGCACCTTATCTTGAGGTATTTAGAGTTTTTGATAAGTA
GACATTTATACAGGACTCGCCCAACTGCAAAGATAACTCTTTTTAACCCA
TAACACCAGATCTCACAATGATTCTGCTTACAGCATTCGAAACAATATGA
TACAGTAACACTGGTTACACTTAAAGAACCTGGCTTAGATGATACTAAAA
ACACAATGATACCGTAACACTGGTTACACTTAAAGGATTTCGATGACCTT
CCTTCAAGTTCAAACGGGCTTCACGAAAGGGATCTCAAAACTCAGAATTC
TGAATTCCTTTATTCTTTGGCAAAACATGTGGTTTTGAAACCAATGCATC
ATATTTCATTAGGGTTTCTATTGAAGGAACGACATTCTTTACAATCAATA
TCTCTCTTCAGAGTTTCGCATATCATTACATCTTCCGAAAATGTGCATTT
TATCAGTAAAATGTGCTTTCAGCTTTCAAAAGAAGTCCTTTGCGAACCAT
AACTTCATCTCGAGCGTTGAAGTATTAGCTTTTCCGCGCACGCTCCTCTC
GCTAATTAAATCTAATGCAACCTGTAATAAATTCGCTTGTCGCGCTTTTC
CGGTCGTGCGAATCAACCCTTTTTCGCGCGTTGTGTGTATGCAAATTCTG
GCGGCAAATTGCCCTGGCGCCATTGAGCCTTATCATCTATGGCATCCTGA
GTCCTGTAGCCTGAGTGCCGTACCTGCCGGAGTCACCCTCGTAGATCCTC
GGATTCCCTCGCGATTTGGCGTACAAAGTAATTTTCTGGCAGCCACGCGA
TTCAATTTTCGGCAAAATATTCGGCATAATAGTAAAGTTTTATGCGAATT
CCGCTGGCAGAACATCCGTTTCCGGCTGAAAAAAAAAGAGAAAGGGTTTC
GGTCACATTGAACTCCACCCCTCACTTCAGATTGACAATCAGCATGCGGT
CTCATATCCGCTGGATGGCAAACAAAACCGGGGAAAACTTTCACTTAGGC
GAATATTGCGAAACTATTGGGCTGCACAACCCGTTGACACAAATCGCACT
AAATCAAAAATTATGCTTTGCACAAATAAAGCGAAAGGACGCCGGCGAGG
ACGAGGTTGCCACGCAGGAAATCGCTACACCCTGTGGCCATAAATCTCAT
CTAGTCAAATATTGAATTACGCCGGATGAAGAGGCAGGGGATGCGAAGGG
CAGGGAAAGGGTTCTCCGGCGATTCGCAGATCCACTTTAGTGGGTCAGAA
GGATGTGGCACATCCCTGCAGATTCGCTATATTCTCATTCCCTATATATG
GTGTGTGACATTTTTCCGGCACATCGCTTTGTCCTGTTTATTTAATAAAA
ATTGAAGTTATGAGTGCTCAAGGGTCGTTTATGCGTCGATAATGAATAGT
TATGGCTGTTTGAAGGGTTCAGATTCATAATGCTTTGTTTGGGTCGCTTA
TGATGCAATTTATTCATGTTTATGTAGTTATTGGGTGTTGGGGTGACAAT
GGGTTAAGGGATTTTCCTTCTTTATATTCCGATTTATTGATAAAAAACCA
ATAAAAACACGCCCGTTGCCAACAAAACAACAACACAGACATAGGTGAGT
GAAACGTACATTTTCAAAACTACATGTTTAATCAATTTCAGGTGGTTTCA
AAAATACAAACACCTACAGAAATACTGCAATACTGCGATACATTTTCAGT
TTGCCTGCTTACCCTAAAAACTCTCAATAAAACATGAATATACAACCAAC
CAAACAAATGTTTTAATTTCTTATTGTTTTCGCTCAGCTAAATTGTATAT
TTTCTTCGACATCAATACAGATAAAATACGACTCAAAGTAAATAATAGCA
ACGCCGATTCAGCTGTTTTGGGTTTTTTTAGAGCTCCCGGGGGTTCACCT
TTCGATTCAACGACAAGCTCTTCTTCGGTAAAAACCAAGCTGATAAGGGA
GATTATGATGTCATTAGCAGTTGAATCGGAAATATTTAATCAAGAGGCAT
CCCCGCCACAGCTTCAGTGTTAATTCAACGCTCAGCTCAGAAACAAAATC
GCCGGATTATATTACTATCACAATGATATACTTTAAATTCTGCTGGCTTC
TAGTCGCCGTTCTACTCTTCATTTCCTCGCAAAATGTCTGCGCAGCTCCA
AAACGAAGAGGAAAACCGAAAATTAAGTTTCCTAAAATCAACATAAATAT
CCATCATAACAATATTAAGATCGGCTAAAATTTGGATTTGTGTAATTGCA
TCTTAGCGTATTTGTTGTTGAATAAAATTACATTATCGTAGTTATATGTT
TCGCCATTGTATGGTTGCATTAAAAAATAACCTATTAAACTTACTTAAAA
CATATTTATACATACCACTATACACATTTTGGTTGTTATAAGAACGATTT
GAGACCTATGTAGATTTTTTGTTATTCTATGTTAAAAATAAAAACAATTT
ACAATATGTCTCGCTTCCAAAAAAAAAAAAAAAAAA

GH11688.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2217-RA 4029 CG2217-RA 9..4029 1..4021 20105 100 Plus
CG2217.a 2250 CG2217.a 23..1599 1..1577 7885 100 Plus
CG2217.a 2250 CG2217.a 1598..2250 3369..4021 3265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26241638..26243904 3761..1502 10970 99.2 Minus
chr3R 27901430 chr3R 26244013..26245514 1502..1 7510 100 Minus
chr3R 27901430 chr3R 26241311..26241567 4018..3762 1285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:44:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30419094..30421353 3761..1502 11300 100 Minus
3R 32079331 3R 30421462..30422963 1502..1 7510 100 Minus
3R 32079331 3R 30418764..30419023 4021..3762 1300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30159925..30162184 3761..1502 11300 100 Minus
3R 31820162 3R 30162293..30163794 1502..1 7510 100 Minus
3R 31820162 3R 30159595..30159854 4021..3762 1300 100 Minus
Blast to na_te.dros performed 2019-03-15 21:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 47..218 51..222 380 73.1 Plus

GH11688.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:30:39 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26241311..26241567 3762..4018 100 <- Minus
chr3R 26241638..26243904 1502..3761 99 <- Minus
chr3R 26244014..26245292 223..1501 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:05 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RA 1..1095 379..1473 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:11 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RB 1..1095 379..1473 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:50:13 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RA 1..1095 379..1473 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:08:47 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RA 1..1095 379..1473 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:28 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RB 1..1095 379..1473 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:36:36 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RA 9..4026 1..4018 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:11 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG42740-RA 9..4026 1..4018 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:50:13 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG42740-RA 9..4026 1..4018 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:08:47 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG2217-RA 9..4026 1..4018 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:28 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
CG42740-RA 9..4026 1..4018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:39 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30419094..30421353 1502..3761 100 <- Minus
3R 30418767..30419023 3762..4018 100 <- Minus
3R 30421463..30422963 1..1501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:39 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30419094..30421353 1502..3761 100 <- Minus
3R 30418767..30419023 3762..4018 100 <- Minus
3R 30421463..30422963 1..1501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:39 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30419094..30421353 1502..3761 100 <- Minus
3R 30418767..30419023 3762..4018 100 <- Minus
3R 30421463..30422963 1..1501 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:50:13 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26244489..26244745 3762..4018 100 <- Minus
arm_3R 26244816..26247075 1502..3761 100 <- Minus
arm_3R 26247185..26248685 1..1501 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:19 Download gff for GH11688.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30159598..30159854 3762..4018 100 <- Minus
3R 30159925..30162184 1502..3761 100 <- Minus
3R 30162294..30163794 1..1501 100   Minus

GH11688.hyp Sequence

Translation from 378 to 1472

> GH11688.hyp
MNSLEVNESDAAPEASPNRNPSVDSGPGFVRLKTRQKKLLRKALHGGLTR
EKALEVVQALPIVKGLLPDPYENQTANPYPSGLVECVRIGLAAESAGTSL
TSEQMTMIKEAIIDVTVEKSGSQKPQFEGCVARRGWLLVTCSNSSTSEWF
KQNFCHIQSKVTTKLKLMDESELPRRNVVLGYFPDSLTTSSQKVLEIIQA
QNPVSTAEWRVMNRLTHGELLHLSMAVDNESHKKLIELNGTISFRFGRVK
LCLKNSLDRKSVLNGRKETSPNRKSLDKAAVSREIVPAPQEPVITNDSPW
NQSHNPWLSHSNPMMQWNQQQMLRYDPYSPRELPPNFLHASYSGLGYGNE
GDRRLRPRTWPGNC*

GH11688.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2217-PD 364 CG2217-PD 1..364 1..364 1912 100 Plus
CG2217-PC 364 CG2217-PC 1..364 1..364 1912 100 Plus
CG2217-PB 364 CG2217-PB 1..364 1..364 1912 100 Plus
CG2217-PA 364 CG2217-PA 1..364 1..364 1912 100 Plus

GH11688.pep Sequence

Translation from 378 to 1472

> GH11688.pep
MNSLEVNESDAAPEASPNRNPSVDSGPGFVRLKTRQKKLLRKALHGGLTR
EKALEVVQALPIVKGLLPDPYENQTANPYPSGLVECVRIGLAAESAGTSL
TSEQMTMIKEAIIDVTVEKSGSQKPQFEGCVARRGWLLVTCSNSSTSEWF
KQNFCHIQSKVTTKLKLMDESELPRRNVVLGYFPDSLTTSSQKVLEIIQA
QNPVSTAEWRVMNRLTHGELLHLSMAVDNESHKKLIELNGTISFRFGRVK
LCLKNSLDRKSVLNGRKETSPNRKSLDKAAVSREIVPAPQEPVITNDSPW
NQSHNPWLSHSNPMMQWNQQQMLRYDPYSPRELPPNFLHASYSGLGYGNE
GDRRLRPRTWPGNC*

GH11688.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15470-PA 334 GF15470-PA 68..254 100..293 198 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11942-PA 362 GG11942-PA 1..361 1..363 1546 80.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23164-PA 416 GH23164-PA 149..399 100..352 189 23 Plus
Dgri\GH22358-PA 662 GH22358-PA 406..556 100..251 160 23.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2217-PD 364 CG2217-PD 1..364 1..364 1912 100 Plus
CG2217-PC 364 CG2217-PC 1..364 1..364 1912 100 Plus
CG2217-PB 364 CG2217-PB 1..364 1..364 1912 100 Plus
CG2217-PA 364 CG2217-PA 1..364 1..364 1912 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17316-PA 984 GI17316-PA 745..912 87..255 358 38.5 Plus
Dmoj\GI23089-PA 431 GI23089-PA 271..423 101..251 228 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12161-PA 84 GM12161-PA 1..65 1..65 319 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17134-PA 364 GD17134-PA 1..363 1..363 1826 94.8 Plus
Dsim\GD24766-PA 267 GD24766-PA 83..235 100..252 172 25.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15855-PA 990 GJ15855-PA 767..987 85..305 360 35.5 Plus
Dvir\GJ22709-PA 285 GJ22709-PA 126..284 101..257 245 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23393-PA 490 GE23393-PA 131..489 1..363 1547 82.1 Plus

GH11688.pep2 Sequence

Translation from 3622 to 3777

> GH11688.pep2
MIYFKFCWLLVAVLLFISSQNVCAAPKRRGKPKIKFPKININIHHNNIKI
G*

GH11688.pep2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42740-PC 51 CG42740-PC 1..51 1..51 274 100 Plus
CG42740-PB 51 CG42740-PB 1..51 1..51 274 100 Plus
CG42740-PA 51 CG42740-PA 1..51 1..51 274 100 Plus