Clone GH11690 Report

Search the DGRC for GH11690

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:116
Well:90
Vector:pOT2
Associated Gene/Transcriptsip1-RA
Protein status:GH11690.pep: gold
Preliminary Size:1697
Sequenced Size:2627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7238 2000-02-14 Blastp of sequenced clone
CG7238 2003-01-01 Sim4 clustering to Release 3
sip1 2008-04-29 Release 5.5 accounting
sip1 2008-08-15 Release 5.9 accounting
sip1 2008-12-18 5.12 accounting

Clone Sequence Records

GH11690.complete Sequence

2627 bp (2627 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145670

> GH11690.complete
TTTGTTTACATTCACAAAAGTTTCAGTTTCTGCTGTAAGTAATATATACA
CGTCTAGCCAGGATGTCGGACAACGATTACGAGCGTTTCGAGATAACGGA
CTACGATCTGGACAATGAGTTCAACATCAATCGGCCCCGAGGCCGCCAGA
GCAGGCACCAACAGATCTACGGTATTTGGGCGGATGACAGCGAGGAGGAG
AGTGGTGGCGAGGGCGGAACTAAGAGAAGGGGGCGCGCCGCCCGTAAACC
CAAAGACTACACCATGCCCGTCAATTTTGTGGCCGGCGGCATTCAGCAGG
CGGGCAAAAAGAAGAAGAAGGCGCTCCAAGCCGATGATGAGAAAGGATCG
CAAAAAGAGGGAGCAGAGGCTGACCAGGGCGAGGAGAGCGACGATTCCGC
CGCCAGCGGACGGCCAGCCTTCGGCCAGAACGATCCGGGCAGCTCCAACA
GCTCATCAGAAGAGGAGAGGCCAACGCTGAGCCGGAAACAGCCAAGCACC
ACATTTCAGCATCGCTCCCACATCGCCAGCGAGCGCAACGTGGGCGCCTG
GGAGCAGCATACACGCGGCATTGGAGCTAAGCTACTCCTTCAAATGGGCT
ATGAGCCTGGCAAGGGTTTGGGCAAAGATCTGCAGGGCATTTCGCATCCT
GTGCAAGCCCATGTCCGCAAGGGCAGAGGTGCTATCGGCGCCTATGGACC
CGAAACTGCGGCAAGCATCGGAGGAAAGACGAACAAGAGCATCAAAGTGG
ATGAGGACGTGCGCGAGGCGAAAGAGTTCAAAGACCAGCTGAACAAGTGG
CGAAAGGGCTCAGCCGGTGGCGCCGAACCAATGGAGCGGCAGGGTAAGCG
CTACTACTACAAGTCCGTGGAGGAGGTGATTGCCAAGGGTCACACGTCCG
GCCACCTACTGTCGGAGAAGCTAAGCAAGAAACTGGGCAATGTGCGGGTG
ATCGATATGACAGGCCCAGAGAAACGAGTGCTGAGTGGCTATCATGCCTT
GGGACAGGCAAAAATTACGCCAGAGGAGACGCTCTACGACACGGAGGCGA
CGGAAAAGGGATCCGCTCCCGCCTGCGTTTTTGCCATGCCCGAGCTGACG
CACAACCTCCAGCTCTTGGTTAGCCAGTGCGAGCAGCAGATCATCGCCAT
CGACAACCAGGAACGCGAGTGTTCCAGCCAGCAGGCAGCGCTGGAAAGCG
AGCACCGGAAACTGGAGGAGATAGTCCAGCTAGAACGAAACCACATACGC
ACGCTGGAGGAATCGTTGGAGCGCGTGGAGCGGTTAATCGATAATCCAGA
CTTGAGTTTACCTCAGGCTGAACGACTCTTTCGGGAGCTGCTCGTGGACT
ACGCTGCCGAATTCCATGAGTTCGGACTTGCAGATCTGGCAGCCGGTGTA
ATAGCGCCGCTCCTGAAGCGAGAACTAGTTCAGTGGCAGCCACTGGAAAA
CCCAACGGAACCGCTGCCACTCATCAAGAAATGGCGCGGCATGCTCCAGC
AAGGAGATGCAGCAGAGCAGCAGCCCCGCAACGTCTTCGATCCGTACTCC
TCGCTCATCTGGGCCGGCGTGATGCCTTCGTTTCGGTCCAGCGCTGCCGC
ATGGCAGCCGAAGGAGCATCCGCCAATGGCTTCACTCCTAGATGCCTGGG
CACCCCTGCTACCTAGCTGGGTCTTGGATTCGGTTCTCGAGCAACTGGTT
CTGCCACGACTGGTGGCTGGTGTCCAGGAGTGGGATCCGCTCACCGACAC
CGTTCCGATCGACAGTTGGGTGCTGCCGTGGCATGCCATCTTGGGCAGCA
AGCTGGAGGAGGCCGTCTATCCTCAGATCCGCAGCAAATTGGGTATAGCA
TTGCGCGCCTGGTCACCGCATGACCGATCAGCCAGAGCCATGCTTACGCC
CTGGCAGAAGGCCTTCCCCGAGGAAGAGATGCAAGAGTTCCTGCAGCGGT
ACATAGTGCCCAAACTGCAGGCGACTCTAGGCGAGCTCATCATCAATCCA
ATGCACCAGGACCTGGAGCTGTGGCAGCAGGTATGGGAGTGGCACGAGCT
CATCGATCCCATGTACATGGCCCAACTACTGGACAGACACTTCTTCCCGC
GCTGGATGCAAGTGCTCGTCGTCTGGCTGAATCAGTCGCCGGACTACGCG
GAGATCTCGCGATGGTACACCGGCTGGAAGAGCATGTTGAGCGAACCGCT
TCTGCGCGAGCCCAGCGTTAAAGAGCATCTGCGGCGAGCACTGGAAATTA
TGCACAGAGCCAGCGATACCCTGCTGCAGCCCACGGTGACGCCCACGCCC
CCGCCTCCAGTTCCTCCGGCTCCAGTCATAATGATGGACCTGATTCATCC
GCCCGCTCAGCTGGAGTTCAAAGAGTTGGTATCGCAGCAATGCGCCGACT
TGGGAATCATCTTCGCTCCTCTGCCAGGGCGACGGGAGATGGGCAAACAG
ATTTATCGTGTGGGAAAGCTGTTTTGCTACATCGATCGTCACGTCTGCAT
GGTCAGCGATGGCAGCTTCAGCAACTGGAAGCCGGTGTCGCTAAATCATC
TGCTAGAACGCTCTCAAACGGGAATTCTTTAAATAAATAGCTGCGAAAAT
GTTTAAAAAAAAAAAAAAAAAAAAAAA

GH11690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
sip1_CG7238-RA 2776 sip1_CG7238-RA 26..2631 1..2606 13030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5720403..5722682 171..2450 11130 99.2 Plus
chr2L 23010047 chr2L 5720182..5720356 1..175 875 100 Plus
chr2L 23010047 chr2L 5722742..5722899 2447..2604 775 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5721295..5723574 171..2450 11400 100 Plus
2L 23513712 2L 5721074..5721248 1..175 875 100 Plus
2L 23513712 2L 5723634..5723793 2447..2606 800 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5721295..5723574 171..2450 11400 100 Plus
2L 23513712 2L 5721074..5721248 1..175 875 100 Plus
2L 23513712 2L 5723634..5723793 2447..2606 800 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:14:24 has no hits.

GH11690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:15:21 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5720182..5720352 1..171 100 -> Plus
chr2L 5720404..5722682 172..2450 99 -> Plus
chr2L 5722746..5722899 2451..2604 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:06 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 1..2520 63..2582 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:59 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 1..2520 63..2582 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:26:08 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 1..2520 63..2582 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:08:31 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 1..2520 63..2582 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:45 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 1..2520 63..2582 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:36:19 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 16..2619 1..2604 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:59 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 36..2639 1..2604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:08 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 24..2627 1..2604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:08:31 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 16..2619 1..2604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:45 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
sip1-RA 24..2627 1..2604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:21 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5721296..5723574 172..2450 100 -> Plus
2L 5723638..5723791 2451..2604 100   Plus
2L 5721074..5721244 1..171 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:21 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5721296..5723574 172..2450 100 -> Plus
2L 5723638..5723791 2451..2604 100   Plus
2L 5721074..5721244 1..171 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:21 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5721296..5723574 172..2450 100 -> Plus
2L 5723638..5723791 2451..2604 100   Plus
2L 5721074..5721244 1..171 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:08 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5721074..5721244 1..171 100 -> Plus
arm_2L 5721296..5723574 172..2450 100 -> Plus
arm_2L 5723638..5723791 2451..2604 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:06 Download gff for GH11690.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5721296..5723574 172..2450 100 -> Plus
2L 5723638..5723791 2451..2604 100   Plus
2L 5721074..5721244 1..171 100 -> Plus

GH11690.pep Sequence

Translation from 62 to 2581

> GH11690.pep
MSDNDYERFEITDYDLDNEFNINRPRGRQSRHQQIYGIWADDSEEESGGE
GGTKRRGRAARKPKDYTMPVNFVAGGIQQAGKKKKKALQADDEKGSQKEG
AEADQGEESDDSAASGRPAFGQNDPGSSNSSSEEERPTLSRKQPSTTFQH
RSHIASERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISHPVQAH
VRKGRGAIGAYGPETAASIGGKTNKSIKVDEDVREAKEFKDQLNKWRKGS
AGGAEPMERQGKRYYYKSVEEVIAKGHTSGHLLSEKLSKKLGNVRVIDMT
GPEKRVLSGYHALGQAKITPEETLYDTEATEKGSAPACVFAMPELTHNLQ
LLVSQCEQQIIAIDNQERECSSQQAALESEHRKLEEIVQLERNHIRTLEE
SLERVERLIDNPDLSLPQAERLFRELLVDYAAEFHEFGLADLAAGVIAPL
LKRELVQWQPLENPTEPLPLIKKWRGMLQQGDAAEQQPRNVFDPYSSLIW
AGVMPSFRSSAAAWQPKEHPPMASLLDAWAPLLPSWVLDSVLEQLVLPRL
VAGVQEWDPLTDTVPIDSWVLPWHAILGSKLEEAVYPQIRSKLGIALRAW
SPHDRSARAMLTPWQKAFPEEEMQEFLQRYIVPKLQATLGELIINPMHQD
LELWQQVWEWHELIDPMYMAQLLDRHFFPRWMQVLVVWLNQSPDYAEISR
WYTGWKSMLSEPLLREPSVKEHLRRALEIMHRASDTLLQPTVTPTPPPPV
PPAPVIMMDLIHPPAQLEFKELVSQQCADLGIIFAPLPGRREMGKQIYRV
GKLFCYIDRHVCMVSDGSFSNWKPVSLNHLLERSQTGIL*

GH11690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14307-PA 846 GF14307-PA 1..846 1..839 3549 81.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25092-PA 839 GG25092-PA 1..839 1..839 4017 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10693-PA 866 GH10693-PA 1..866 1..839 2958 66.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
sip1-PB 839 CG7238-PB 1..839 1..839 4429 100 Plus
sip1-PA 839 CG7238-PA 1..839 1..839 4429 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11229-PA 852 GI11229-PA 1..852 1..839 3104 70.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\STIP-PA 835 GL26638-PA 1..835 1..839 3331 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\STIP-PA 835 GA20203-PA 1..835 1..839 3327 78.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\STIP-PA 839 GM18568-PA 1..839 1..839 4312 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23359-PA 751 GD23359-PA 1..751 1..839 3260 81.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12292-PA 853 GJ12292-PA 1..853 1..839 3036 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15423-PA 824 GK15423-PA 1..821 1..824 3110 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\STIP-PA 839 GE25592-PA 1..839 1..839 4036 93.2 Plus

GH11690.hyp Sequence

Translation from 62 to 2581

> GH11690.hyp
MSDNDYERFEITDYDLDNEFNINRPRGRQSRHQQIYGIWADDSEEESGGE
GGTKRRGRAARKPKDYTMPVNFVAGGIQQAGKKKKKALQADDEKGSQKEG
AEADQGEESDDSAASGRPAFGQNDPGSSNSSSEEERPTLSRKQPSTTFQH
RSHIASERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISHPVQAH
VRKGRGAIGAYGPETAASIGGKTNKSIKVDEDVREAKEFKDQLNKWRKGS
AGGAEPMERQGKRYYYKSVEEVIAKGHTSGHLLSEKLSKKLGNVRVIDMT
GPEKRVLSGYHALGQAKITPEETLYDTEATEKGSAPACVFAMPELTHNLQ
LLVSQCEQQIIAIDNQERECSSQQAALESEHRKLEEIVQLERNHIRTLEE
SLERVERLIDNPDLSLPQAERLFRELLVDYAAEFHEFGLADLAAGVIAPL
LKRELVQWQPLENPTEPLPLIKKWRGMLQQGDAAEQQPRNVFDPYSSLIW
AGVMPSFRSSAAAWQPKEHPPMASLLDAWAPLLPSWVLDSVLEQLVLPRL
VAGVQEWDPLTDTVPIDSWVLPWHAILGSKLEEAVYPQIRSKLGIALRAW
SPHDRSARAMLTPWQKAFPEEEMQEFLQRYIVPKLQATLGELIINPMHQD
LELWQQVWEWHELIDPMYMAQLLDRHFFPRWMQVLVVWLNQSPDYAEISR
WYTGWKSMLSEPLLREPSVKEHLRRALEIMHRASDTLLQPTVTPTPPPPV
PPAPVIMMDLIHPPAQLEFKELVSQQCADLGIIFAPLPGRREMGKQIYRV
GKLFCYIDRHVCMVSDGSFSNWKPVSLNHLLERSQTGIL*

GH11690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
sip1-PB 839 CG7238-PB 1..839 1..839 4429 100 Plus
sip1-PA 839 CG7238-PA 1..839 1..839 4429 100 Plus