Clone GH11727 Report

Search the DGRC for GH11727

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:117
Well:27
Vector:pOT2
Associated Gene/TranscriptGadd34-RA
Protein status:GH11727.pep: gold
Preliminary Size:1569
Sequenced Size:1576

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3825 2001-01-01 Release 2 assignment
CG3825 2001-07-04 Blastp of sequenced clone
CG3825 2003-01-01 Sim4 clustering to Release 3
CG3825 2008-04-29 Release 5.5 accounting
CG3825 2008-08-15 Release 5.9 accounting
CG3825 2008-12-18 5.12 accounting

Clone Sequence Records

GH11727.complete Sequence

1576 bp (1576 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051450

> GH11727.complete
AACTATTCTGGTATAAAACGTGTAAAACTCTGAATATTATTGTGCCTGGA
CTCTATATCTCGCTATATACGCTACAAACGAAAGCAGAACTAGCCTACAA
CTGAAAAACAGTAAAGTGCAAAGGATCGGATGCACGACATACGTAACATT
TCACCATATATGTGCGTTATTTCACTCCATATTACATTAGTTAATCGCAG
TAACCATGGATAAGTGTGTTTCAAATTAAGCTGGCCACCATGCCCCCCAA
AGCCAAGTTCAAGAAAATGGCCATTCGCAAGGGATTCCCACCACACCAAA
CGCATACTTGTGTCTTTAAGTTCAGATGTCGAAATTTCACACCCTTATGG
GCGCACTGTTTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATG
AGTTCCCCTATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTC
CGCTGGATCACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCAC
CCGAGGTCAAACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTG
CAGCCAGACCCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAAT
GGCTATGGACGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCA
ACGCCCAGAGTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCC
TTGCGGCGTTGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCC
GCACCACGGCTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCT
CCAGTGACCGGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAG
AGCTCCTGGCAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTT
CATTTGCTTTGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAG
ACGAGGATGATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGT
GAGGATGAAAATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAG
CTCGACTCCTGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACG
TAATGCTCGCCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGG
CAGGTAATGGCGCGAGATCGGGATCGCTTTCAGCAGCGGATTCGGCGGAT
TTCACCCATTCTCAATGCCGTCCTGACTCCAGTTCACCGAGATCGTGTCT
ACCAAGCTCGATTCTTGCACGAGGACTAGCTGGTCCGCATACCTGAAGTA
ACTTTTGATGTACAGATTACAGTTTAGAACGATTACAGCATTAAATTCCA
AGTTGTTTGCGTGTATAAAGTGATCGATTTAGCCACTGCGTTCGTGATTG
ATTTTATGAAGCCAAAAACTGTTTAACCTGTAAAGTATATCAAAACCACG
TACACTTTTCTTCGCCTTTAGTTTTAGAGCCCTAAGAAGTTTGAATTTGT
TGATAACGGGATTAGCATATACCTTAATATAACTTGAAATAAATTAAGCA
ATAGACGTAAAAAAAAAAAAAAAAAA

GH11727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3825-RA 1833 CG3825-RA 194..1752 1..1559 7795 100 Plus
CG3825.a 2243 CG3825.a 604..2162 1..1559 7795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19862226..19863296 1071..1 5310 99.7 Minus
chr2R 21145070 chr2R 19861679..19862169 1558..1068 2455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23976146..23977216 1071..1 5355 100 Minus
2R 25286936 2R 23975598..23976089 1559..1068 2460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23977345..23978415 1071..1 5355 100 Minus
2R 25260384 2R 23976797..23977288 1559..1068 2460 100 Minus
Blast to na_te.dros performed 2019-03-16 01:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5490..5545 107..53 124 71.4 Minus

GH11727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:04:41 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19861679..19862167 1070..1558 100 <- Minus
chr2R 19862228..19863296 1..1069 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:10 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 1..954 326..1279 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:47 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 1..954 326..1279 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:12 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 1..954 326..1279 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:04 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 1..954 326..1279 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:21:21 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 1..954 326..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:26 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 63..1618 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:47 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 63..1618 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:12 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 40..1597 1..1558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:04 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 63..1618 1..1556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:21:21 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 40..1597 1..1558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:41 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23975599..23976087 1070..1558 100 <- Minus
2R 23976148..23977216 1..1069 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:41 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23975599..23976087 1070..1558 100 <- Minus
2R 23976148..23977216 1..1069 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:41 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23975599..23976087 1070..1558 100 <- Minus
2R 23976148..23977216 1..1069 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:12 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19863122..19863610 1070..1558 100 <- Minus
arm_2R 19863671..19864739 1..1069 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:57 Download gff for GH11727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23976816..23977304 1070..1558 100 <- Minus
2R 23977365..23978433 1..1069 100   Minus

GH11727.pep Sequence

Translation from 325 to 1278

> GH11727.pep
MSKFHTLMGALFDPFLFVLRLIANMSSPIYEQYRFGPSRPLSAGSRTLWK
PNKVHQEAPEVKPLEVPEDLRIPTLQPDPLNPLATMMSFKLMAMDVVTQM
QTALHKCVNAQSPPGAKMAGIELDALRRCVPSSCYFFIDLHPHHGFKDTA
EDCPTSQASSDRNNNAGCSQGSAAKSSWQRQRSISECSEDSFICFEDDAE
QADEDVEEDEDDDDDDSSVQFTACGEDENTEELKACQCSDDSSTPVKKVR
FNMKPEVHVMLAWDYAYRAARKSEWQVMARDRDRFQQRIRRISPILNAVL
TPVHRDRVYQARFLHED*

GH11727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12046-PA 309 GF12046-PA 1..305 1..317 828 59.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19970-PA 315 GG19970-PA 1..315 1..317 1473 89.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20179-PA 287 GH20179-PA 63..284 72..314 372 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
PPP1R15-PA 317 CG3825-PA 1..317 1..317 1688 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20700-PA 277 GI20700-PA 1..274 12..314 480 40.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10438-PA 303 GL10438-PA 1..299 1..313 824 57.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17713-PA 303 GA17713-PA 1..299 1..313 826 57.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15484-PA 317 GM15484-PA 1..317 1..317 1549 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24987-PA 317 GD24987-PA 1..317 1..317 1659 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21892-PA 69 GJ21892-PA 1..66 249..314 272 74.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15845-PA 318 GK15845-PA 1..316 1..313 596 44.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11502-PA 323 GE11502-PA 1..323 1..317 1429 88.9 Plus

GH11727.hyp Sequence

Translation from 325 to 1278

> GH11727.hyp
MSKFHTLMGALFDPFLFVLRLIANMSSPIYEQYRFGPSRPLSAGSRTLWK
PNKVHQEAPEVKPLEVPEDLRIPTLQPDPLNPLATMMSFKLMAMDVVTQM
QTALHKCVNAQSPPGAKMAGIELDALRRCVPSSCYFFIDLHPHHGFKDTA
EDCPTSQASSDRNNNAGCSQGSAAKSSWQRQRSISECSEDSFICFEDDAE
QADEDVEEDEDDDDDDSSVQFTACGEDENTEELKACQCSDDSSTPVKKVR
FNMKPEVHVMLAWDYAYRAARKSEWQVMARDRDRFQQRIRRISPILNAVL
TPVHRDRVYQARFLHED*

GH11727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd34-PA 317 CG3825-PA 1..317 1..317 1688 100 Plus